BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2145.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775180.1| transmembrane protein [Herbaspirillum serope... 425 e-117 ref|YP_004420492.1| hypothetical protein UMN179_01578 [Gallibact... 380 e-103 ref|YP_003612454.1| hypothetical protein ECL_01953 [Enterobacter... 377 e-102 ref|YP_003003528.1| hypothetical protein Dd1591_1182 [Dickeya ze... 376 e-102 ref|YP_003209686.1| hypothetical protein CTU_13230 [Cronobacter ... 375 e-102 >ref|YP_003775180.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63272.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 241/241 (100%), Positives = 241/241 (100%) Query: 1 MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS 60 MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS Sbjct: 1 MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS 60 Query: 61 LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ 120 LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ Sbjct: 61 LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ 120 Query: 121 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM 180 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM Sbjct: 121 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM 180 Query: 181 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQSAAKVS 240 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQSAAKVS Sbjct: 181 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQSAAKVS 240 Query: 241 A 241 A Sbjct: 241 A 241 >ref|YP_004420492.1| hypothetical protein UMN179_01578 [Gallibacterium anatis UMN179] gb|AEC17595.1| putative membrane protein [Gallibacterium anatis UMN179] Length = 239 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 200/239 (83%), Positives = 221/239 (92%), Gaps = 1/239 (0%) Query: 1 MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS 60 M+S TLLPLIGIPIVV GFALRFNPLLVV +AG+ TGL VGMDFGMLLETFGEKF+NSRS Sbjct: 1 MDSATLLPLIGIPIVVIGFALRFNPLLVVVIAGIATGLMVGMDFGMLLETFGEKFINSRS 60 Query: 61 LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ 120 LATF+LILP+IGLLE+YGLKERAQAW++ IASATSARILMLYF++REGTAALGL+ LGG Sbjct: 61 LATFILILPVIGLLEYYGLKERAQAWVAKIASATSARILMLYFVVREGTAALGLMSLGGH 120 Query: 121 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM 180 AQTVRPLLAPMAEGAA+N YG DLPQHIRDKIKAH+AACDNIAVFFGEDIFIAFGAVLL+ Sbjct: 121 AQTVRPLLAPMAEGAALNKYG-DLPQHIRDKIKAHSAACDNIAVFFGEDIFIAFGAVLLI 179 Query: 181 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQSAAKV 239 DAFLKENGITNIEPLHIGLWAIPTA++AL+IHMFRL RLDA+I RDV AW+A Q + Sbjct: 180 DAFLKENGITNIEPLHIGLWAIPTAIAALIIHMFRLVRLDAAIHRDVIAWQAQQEKGGI 238 >ref|YP_003612454.1| hypothetical protein ECL_01953 [Enterobacter cloacae subsp. cloacae ATCC 13047] gb|ADF61505.1| hypothetical protein ECL_01953 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 240 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 202/240 (84%), Positives = 221/240 (92%), Gaps = 1/240 (0%) Query: 1 MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS 60 M+ +TLLPLIGIP+VV GFALRFNPLLVV VAGLTTGL VGMDFGMLLETFGEKFVNSRS Sbjct: 1 MDGSTLLPLIGIPVVVIGFALRFNPLLVVVVAGLTTGLLVGMDFGMLLETFGEKFVNSRS 60 Query: 61 LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ 120 LATF+LILP+IGLLE+YGLKERAQAW++ IASATSARILM+YF+ REGTAALGL+ LGG Sbjct: 61 LATFILILPVIGLLEYYGLKERAQAWVAKIASATSARILMIYFVAREGTAALGLMSLGGH 120 Query: 121 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM 180 AQTVRPLLAPMAEGAA+N YGE LPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLL+ Sbjct: 121 AQTVRPLLAPMAEGAALNEYGE-LPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLI 179 Query: 181 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQSAAKVS 240 DAFLKENGI IEPLHIGLWAIPTA++AL+IHM RL RLDASIRRDV AWKA Q +++ Sbjct: 180 DAFLKENGIQGIEPLHIGLWAIPTAIAALIIHMTRLLRLDASIRRDVMAWKAGQGTQEIA 239 >ref|YP_003003528.1| hypothetical protein Dd1591_1182 [Dickeya zeae Ech1591] gb|ACT06049.1| protein of unknown function DUF969 [Dickeya zeae Ech1591] Length = 239 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 202/240 (84%), Positives = 225/240 (93%), Gaps = 2/240 (0%) Query: 1 MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS 60 MEST+++PLIGIPIVV GFALRFNPLLVV VAGLTTGL+VGMDFG+LLETFGEKF+NSRS Sbjct: 1 MESTSIVPLIGIPIVVIGFALRFNPLLVVVVAGLTTGLAVGMDFGLLLETFGEKFLNSRS 60 Query: 61 LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ 120 LATF+LILP+IGLLE+YGLKE+AQ+W+S IASATSARILM+YF++REGTAALGL+ LGG Sbjct: 61 LATFILILPVIGLLEYYGLKEQAQSWVSRIASATSARILMVYFLVREGTAALGLMSLGGH 120 Query: 121 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM 180 AQTVRPLLAPMAEGAA+N YG DLP IRDKIKAHAAACDNIAVFFGEDIFIAFGAVLL+ Sbjct: 121 AQTVRPLLAPMAEGAALNQYG-DLPPSIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLI 179 Query: 181 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQSAAKVS 240 DAFL+ENGI+ IEPLHIGLWAIPTALSALVIH+FRLTRLDASIRRDV AWK QS +V+ Sbjct: 180 DAFLRENGISGIEPLHIGLWAIPTALSALVIHLFRLTRLDASIRRDVVAWK-QQSTKEVT 238 >ref|YP_003209686.1| hypothetical protein CTU_13230 [Cronobacter turicensis z3032] emb|CBA29253.1| hypothetical protein CTU_13230 [Cronobacter turicensis z3032] Length = 240 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 200/234 (85%), Positives = 220/234 (94%), Gaps = 1/234 (0%) Query: 1 MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS 60 M+ ++LLPLIGIP+VV GFALRFNPLLVV VAGLTTGL+VGMDFGMLLETFGEKFVNSRS Sbjct: 1 MDGSSLLPLIGIPVVVIGFALRFNPLLVVVVAGLTTGLTVGMDFGMLLETFGEKFVNSRS 60 Query: 61 LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ 120 LATF+LILP+IGLLE+YGLKERAQAW++ IASATSARILMLYF++REGTAALGL+ LGG Sbjct: 61 LATFILILPVIGLLEYYGLKERAQAWVAKIASATSARILMLYFVVREGTAALGLMSLGGH 120 Query: 121 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM 180 AQTVRPLLAPMAEGAA+N YGE LPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLL+ Sbjct: 121 AQTVRPLLAPMAEGAALNEYGE-LPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLI 179 Query: 181 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQ 234 DAFLKENGI IEPLHIGLWAIPTA++AL+IHM RL RLDASIRR+V AW+A Q Sbjct: 180 DAFLKENGIPGIEPLHIGLWAIPTAIAALIIHMARLLRLDASIRREVLAWRAEQ 233