BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2142.p (430 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775177.1| NADH dehydrogenase [Herbaspirillum seropedic... 780 0.0 ref|YP_004618297.1| NADH dehydrogenase [Ramlibacter tataouinensi... 522 e-146 ref|YP_001021407.1| NADH dehydrogenase [Methylibium petroleiphil... 518 e-144 ref|YP_001905356.1| Putative NADH dehydrogenase [Xanthomonas cam... 481 e-134 ref|YP_004147825.1| NADH dehydrogenase (ubiquinone) [Pseudoxanth... 481 e-133 >ref|YP_003775177.1| NADH dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ63269.1| NADH dehydrogenase, FAD-containing subunit, protein; cytochrome c reductase protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 389/430 (90%), Positives = 415/430 (96%) Query: 1 MPHVIIIGCGFGGLAAARELAHADVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIR 60 MPHV+IIGCGFGGLAAARELA+A+VRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIR Sbjct: 1 MPHVVIIGCGFGGLAAARELANAEVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIR 60 Query: 61 AILAQQRNLTTLMAAVTGIDTAGKSVTLEDGSELSYDYLIVAAGSTHSYFGRDEWSTLAP 120 AILA QRNLTTLMAAVTGIDTA K+V LEDGS ++YD+LIVAAGSTHSYFGRDEWS+LAP Sbjct: 61 AILAHQRNLTTLMAAVTGIDTAAKTVQLEDGSTMAYDHLIVAAGSTHSYFGRDEWSSLAP 120 Query: 121 GLKTLEDAFEIRKRILMAFEHAERETDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHT 180 GLKTLEDAFEIRKRILMAFE AERE+DARRRQEWLTFTVIGGGATGVEMAGTLVEIARHT Sbjct: 121 GLKTLEDAFEIRKRILMAFERAERESDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHT 180 Query: 181 LSGEFRNIDPHSARVVLVEGSERVLGAYPEDLSEKAREQLQKLGVDVRTGCRVVHIDETC 240 L+GEFRNIDPHSARVVL+EGS+R+LGAYP DLS+KAREQLQKLGVDVRTG RVVHIDETC Sbjct: 181 LAGEFRNIDPHSARVVLIEGSDRILGAYPPDLSDKAREQLQKLGVDVRTGSRVVHIDETC 240 Query: 241 VRYANFDGEQSLATRTVIWSAGVAASPLGKQLGVPVDRAGRVPVTPQLCIGGHDEVFVIG 300 VRY NFDGEQ+L+TRTVIWSAGVAASPLG+ LGV +DRAGRVPV+P+L I GHD+V+VIG Sbjct: 241 VRYTNFDGEQTLSTRTVIWSAGVAASPLGRALGVELDRAGRVPVSPELNIAGHDDVYVIG 300 Query: 301 DLAAAQSDGKPVPGVSPAAKQMGRVAARNIKHHIAGQPAESFVYKDYGSLATIGRRAAIA 360 DLAAAQS+GKPVPGVSPAAKQMGRVAARNIKH IAGQ E+FVY+DYGSLATIGR+AAIA Sbjct: 301 DLAAAQSEGKPVPGVSPAAKQMGRVAARNIKHRIAGQTPETFVYQDYGSLATIGRKAAIA 360 Query: 361 MVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVISATMPTQAE 420 MVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVISATMPTQAE Sbjct: 361 MVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVISATMPTQAE 420 Query: 421 QSPLRKEAAE 430 QSPLRKEAAE Sbjct: 421 QSPLRKEAAE 430 >ref|YP_004618297.1| NADH dehydrogenase [Ramlibacter tataouinensis TTB310] gb|AEG92278.1| NADH dehydrogenase-like protein [Ramlibacter tataouinensis TTB310] Length = 450 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 271/434 (62%), Positives = 333/434 (76%), Gaps = 16/434 (3%) Query: 2 PHVIIIGCGFGGLAAARELAHADVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIRA 61 P V+IIGCGFGGL AA+ L A V +T++DR+NHHLFQPLLYQVATAGLSAPAI+AP+R Sbjct: 14 PRVLIIGCGFGGLEAAKALRRAPVDVTVVDRTNHHLFQPLLYQVATAGLSAPAIAAPVRH 73 Query: 62 ILAQQRNLTTLMAAVTGIDTAGKSVTLEDGSELSYDYLIVAAGSTHSYFGRDEWSTLAPG 121 +L Q N+TTL+ VT ID A + V L G L YD+L+VAAG+THSYFGRD+W+ APG Sbjct: 74 VLRDQANVTTLLGEVTAIDPALRIVRLGSGEALPYDHLVVAAGATHSYFGRDDWARFAPG 133 Query: 122 LKTLEDAFEIRKRILMAFEHAERETDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHTL 181 LKTL+DAFEIR+RIL+A+E AE+E+D RRR EWLTF VIGGG TGVEMAGT+ EIARHTL Sbjct: 134 LKTLDDAFEIRRRILLAYEAAEKESDPRRRAEWLTFVVIGGGPTGVEMAGTMAEIARHTL 193 Query: 182 SGEFRNIDPHSARVVLVEGSERVLGAYPEDLSEKAREQLQKLGVDVRTGCRVVHIDETCV 241 GEFR IDP SARV+L+EG RVL PEDLS++A+EQLQ+LGV+VRTG RVV ID+T + Sbjct: 194 RGEFRRIDPASARVLLIEGGSRVLQTMPEDLSQRAQEQLQRLGVEVRTGSRVVGIDDTGL 253 Query: 242 RY---ANFDGEQSLATRTVIWSAGVAASPLGKQL----GVPVDRAGRVPVTPQLCIGGHD 294 + A D +++R ++W+AGVAASPLG+QL G+ DRAGR+PV P L + GH Sbjct: 254 QVQPGAGPDAAYRISSRCIVWAAGVAASPLGRQLAEATGIATDRAGRMPVEPDLSLRGHP 313 Query: 295 EVFVIGDLAAAQSD-----GKPVPGVSPAAKQMGRVAARNIKHHIAGQPAESFVYKDYGS 349 ++ V+GDLAAA S +PVPGVSPAAKQMGR AA NI + G+P F Y+DYGS Sbjct: 314 DISVVGDLAAAMSHHPRRPARPVPGVSPAAKQMGRAAAANILRRLRGEPTRPFRYRDYGS 373 Query: 350 LATIGRRAAI----AMVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFK 405 LATIGR +A+ G++KFSGYPAWLFWLF HVYFLIGFRNRI+V+ DWA AY++ + Sbjct: 374 LATIGRNSAVVDLWTHFGRVKFSGYPAWLFWLFAHVYFLIGFRNRIVVLFDWATAYWSRQ 433 Query: 406 RSARVISATMPTQA 419 R ARV++ T A Sbjct: 434 RYARVVTNIGGTAA 447 >ref|YP_001021407.1| NADH dehydrogenase [Methylibium petroleiphilum PM1] gb|ABM95172.1| NADH dehydrogenase [Methylibium petroleiphilum PM1] Length = 438 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 271/426 (63%), Positives = 325/426 (76%), Gaps = 17/426 (3%) Query: 4 VIIIGCGFGGLAAARELAHADVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIRAIL 63 ++IIGCGFGG+ A R L+ ADV IT++DR+NHHLFQPLLYQVATA LSAPAIS PIR IL Sbjct: 1 MVIIGCGFGGIEAVRSLSRADVEITLVDRTNHHLFQPLLYQVATANLSAPAISGPIRHIL 60 Query: 64 ---AQQRNLTTLMAAVTGIDTAGKSVTLEDGSELSYDYLIVAAGSTHSYFGRDEWSTLAP 120 Q+ NLT L+ VTGIDTA +SVTL+ ++YD+LIVAAG+THSYFG D+W+ AP Sbjct: 61 RREMQRGNLTILLGEVTGIDTAARSVTLDGREPIAYDHLIVAAGATHSYFGHDDWAAHAP 120 Query: 121 GLKTLEDAFEIRKRILMAFEHAERETDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHT 180 GLKTL DAF IR+R+LMAFEHAERE D +R+ WLTF V+G G TGVE+AG L EIA HT Sbjct: 121 GLKTLADAFTIRRRVLMAFEHAEREADPAKREAWLTFAVVGAGPTGVELAGQLAEIAHHT 180 Query: 181 LSGEFRNIDPHSARVVLVEGSERVLGAYPEDLSEKAREQLQKLGVDVRTGCRVVHIDETC 240 L EFR ID +RVVLVEG RVLGA+ E LS++A EQLQ LGV+VRTG V ID Sbjct: 181 LHDEFRRIDSRRSRVVLVEGGPRVLGAFSEQLSQRALEQLQSLGVEVRTGASVTAIDAEG 240 Query: 241 VRYANFDGEQSLATRTVIWSAGVAASPLGKQL----GVPVDRAGRVPVTPQLCIGGHDEV 296 + YA DG Q +A +TV+W+AGVAAS LG+ L G +DRAGRV V P L + GH E+ Sbjct: 241 LSYAGTDGPQRIAAQTVVWAAGVAASKLGRALAELTGCTLDRAGRVVVEPDLSLAGHPEI 300 Query: 297 FVIGDLAAAQSDGK-----PVPGVSPAAKQMGRVAARNIKHHIAGQPAESFVYKDYGSLA 351 V+GDLAAAQS K PVPGVSPAAKQMGR AA N+ + G+P +F Y DYG+LA Sbjct: 301 HVVGDLAAAQSHPKRGAPTPVPGVSPAAKQMGRTAATNLLRRLRGEPTAAFRYNDYGALA 360 Query: 352 TIGRRAAIAMV-----GKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKR 406 TIGRRAAIAMV G++ FSG PAWLFWLFVH+YFLIGFRNR++V++DWAWAYF+F+R Sbjct: 361 TIGRRAAIAMVDLPVFGRVHFSGMPAWLFWLFVHIYFLIGFRNRLVVLSDWAWAYFSFER 420 Query: 407 SARVIS 412 ARV++ Sbjct: 421 QARVVA 426 >ref|YP_001905356.1| Putative NADH dehydrogenase [Xanthomonas campestris pv. campestris str. B100] emb|CAP53318.1| Putative NADH dehydrogenase [Xanthomonas campestris pv. campestris] Length = 461 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 239/409 (58%), Positives = 308/409 (75%), Gaps = 4/409 (0%) Query: 3 HVIIIGCGFGGLAAARELAHADVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIRAI 62 H++++G GF GL A R LA D+RIT+IDR NHHLFQPLLYQVATAGLSAP I+AP+R I Sbjct: 44 HLVVVGGGFAGLWATRALADPDIRITLIDRQNHHLFQPLLYQVATAGLSAPDIAAPLRHI 103 Query: 63 LAQQRNLTTLMAAVTGIDTAGKSVTLEDGSELSYDYLIVAAGSTHSYFGRDEWSTLAPGL 122 L +QRN+ L+ V I T ++V L DG+ ++YD L++A G+TH+YFG D W+ APGL Sbjct: 104 LREQRNVEVLLGDVAEIATDRRAVVLADGNTVNYDMLLLATGATHAYFGNDHWAEHAPGL 163 Query: 123 KTLEDAFEIRKRILMAFEHAERETDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHTLS 182 KTL DA +R+++L+AFE AE E+D R WL+F V+GGG TGVE+AGTL EIARHTL Sbjct: 164 KTLYDALVLRRKLLLAFERAEAESDPAARAAWLSFAVVGGGPTGVELAGTLAEIARHTLK 223 Query: 183 GEFRNIDPHSARVVLVEGSERVLGAYPEDLSEKAREQLQKLGVDVRTGCRVVHIDETCVR 242 EFR+IDP ARV LVE RVL ++P+DL++KAR+QL++LGV+V TG V +ID Sbjct: 224 NEFRHIDPQQARVRLVEAGPRVLPSFPDDLTDKARKQLERLGVEVHTGTPVTNIDA---- 279 Query: 243 YANFDGEQSLATRTVIWSAGVAASPLGKQLGVPVDRAGRVPVTPQLCIGGHDEVFVIGDL 302 + G+ + RTV+W+AGVAASPL + LGVP+DRAGRV V P L + GH E+FV GDL Sbjct: 280 FGYQLGDTFVPARTVVWAAGVAASPLARTLGVPLDRAGRVLVEPDLSVPGHPEIFVGGDL 339 Query: 303 AAAQSDGKPVPGVSPAAKQMGRVAARNIKHHIAGQPAESFVYKDYGSLATIGRRAAIAMV 362 A+ Q DG+PVPGV+PAAKQMG+ A+ I+ GQ A +F Y+D+G+LATIGR AAI V Sbjct: 340 ASVQQDGRPVPGVAPAAKQMGKHIAKAIRARQRGQAAPAFHYQDFGNLATIGRMAAIVHV 399 Query: 363 GKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVI 411 GKLK SG AW FWL HVYFLIGFRNR +V+ +WA AY++++R+AR+I Sbjct: 400 GKLKLSGIVAWWFWLAAHVYFLIGFRNRFVVLVNWAMAYWSYQRAARII 448 >ref|YP_004147825.1| NADH dehydrogenase (ubiquinone) [Pseudoxanthomonas suwonensis 11-1] gb|ADV28594.1| NADH dehydrogenase (ubiquinone) [Pseudoxanthomonas suwonensis 11-1] Length = 430 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 240/423 (56%), Positives = 313/423 (73%), Gaps = 5/423 (1%) Query: 2 PHVIIIGCGFGGLAAARELAHADVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIRA 61 PH+++IG GF GL A R LA + +RIT++DRSNHHLFQPLLYQVATAGLSAP I+AP+R Sbjct: 9 PHLVVIGGGFAGLWATRALAWSPLRITLVDRSNHHLFQPLLYQVATAGLSAPDIAAPLRH 68 Query: 62 ILAQQRNLTTLMAAVTGIDTAGKSVTLEDGSELSYDYLIVAAGSTHSYFGRDEWSTLAPG 121 IL +QRN+ + V ID ++ TL DG L YDYL++A G+TH+YFG ++W+ APG Sbjct: 69 ILRRQRNVGIRLGEVEAIDPQARTATLADGKALHYDYLLLATGATHAYFGNEQWAQHAPG 128 Query: 122 LKTLEDAFEIRKRILMAFEHAERETDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHTL 181 LK+L+DA E+R+++L+AFE AE D R WL F ++GGG TGVE+AGTL EIARHTL Sbjct: 129 LKSLDDALELRRKLLLAFERAEACDDPAERAAWLEFAIVGGGPTGVELAGTLAEIARHTL 188 Query: 182 SGEFRNIDPHSARVVLVEGSERVLGAYPEDLSEKAREQLQKLGVDVRTGCRVVHIDETCV 241 +FRNI+P +ARV L+E RVL ++PEDLSEKAR QL+KLGV+V TG V I+ Sbjct: 189 RDQFRNINPATARVRLIEAGPRVLASFPEDLSEKARRQLEKLGVEVSTGVPVTDINAGGY 248 Query: 242 RYANFDGEQSLATRTVIWSAGVAASPLGKQLGVPVDRAGRVPVTPQLCIGGHDEVFVIGD 301 R G+ + +RT++W+AGVAASPL + LGVP+DRAGRVPV P L + GH E+FV GD Sbjct: 249 RL----GDTYVHSRTIVWAAGVAASPLARSLGVPLDRAGRVPVEPDLSVPGHPEIFVGGD 304 Query: 302 LAAA-QSDGKPVPGVSPAAKQMGRVAARNIKHHIAGQPAESFVYKDYGSLATIGRRAAIA 360 LAA Q+DG PVPGV+PAAKQMGR AR I+ + G PA F Y+D+G+LATIGR AA+ Sbjct: 305 LAAVEQADGSPVPGVAPAAKQMGRHVARAIQARLQGAPARPFRYRDFGNLATIGRMAAVV 364 Query: 361 MVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVISATMPTQAE 420 + ++ SG AW FWL HV+FLIGFRNR++V+ +WAWAY++++R+AR+I P A Sbjct: 365 DIHGIRLSGVLAWWFWLAAHVFFLIGFRNRLVVLLNWAWAYWSYQRAARIILGREPGSAR 424 Query: 421 QSP 423 +P Sbjct: 425 DAP 427