BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2139.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775175.1| 30S ribosomal protein S15 [Herbaspirillum se...   147   6e-34
ref|YP_004753712.1| 30S ribosomal protein S15p (S13e) [Collimona...   135   3e-30
ref|ZP_08272662.1| SSU ribosomal protein S15p (S13e) [Oxalobacte...   132   2e-29
ref|YP_001100110.1| 30S ribosomal protein S15 [Herminiimonas ars...   130   6e-29
ref|YP_001353148.1| small subunit ribosomal protein S15 [Janthin...   127   4e-28

>ref|YP_003775175.1| 30S ribosomal protein S15 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63267.1| 30S ribosomal subunit protein S15 [Herbaspirillum seropedicae
          SmR1]
          Length = 89

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV 60
          MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV
Sbjct: 1  MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV 60

Query: 61 NRRKSLLSYLKNKDADRYRALIEKLGLRK 89
          NRRKSLLSYLKNKDADRYRALIEKLGLRK
Sbjct: 61 NRRKSLLSYLKNKDADRYRALIEKLGLRK 89


>ref|YP_004753712.1| 30S ribosomal protein S15p (S13e) [Collimonas fungivorans Ter331]
 gb|AEK62889.1| SSU ribosomal protein S15p (S13e) [Collimonas fungivorans Ter331]
          Length = 89

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/89 (87%), Positives = 83/89 (93%)

Query: 1  MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV 60
          M+IEK AKAAII++NARG NDTGSPEVQVALLTARINDLNGHFKAH KDHHSRRGLI MV
Sbjct: 1  MTIEKTAKAAIITDNARGQNDTGSPEVQVALLTARINDLNGHFKAHAKDHHSRRGLIMMV 60

Query: 61 NRRKSLLSYLKNKDADRYRALIEKLGLRK 89
          NRRKSLLSYLK KD +RYR+LIEKLGLRK
Sbjct: 61 NRRKSLLSYLKGKDLNRYRSLIEKLGLRK 89


>ref|ZP_08272662.1| SSU ribosomal protein S15p (S13e) [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF33864.1| SSU ribosomal protein S15p (S13e) [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 89

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/89 (86%), Positives = 84/89 (94%)

Query: 1  MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV 60
          MS+EK++KAAII++NARG NDTGSPEVQVALLTARIN+LNGHFKAH KDHHSRRGLI MV
Sbjct: 1  MSMEKSSKAAIIADNARGLNDTGSPEVQVALLTARINELNGHFKAHAKDHHSRRGLIMMV 60

Query: 61 NRRKSLLSYLKNKDADRYRALIEKLGLRK 89
          NRRKSLLSYLK KDA RYR+LIEKLGLRK
Sbjct: 61 NRRKSLLSYLKGKDATRYRSLIEKLGLRK 89


>ref|YP_001100110.1| 30S ribosomal protein S15 [Herminiimonas arsenicoxydans]
 sp|A4G648|RS15_HERAR RecName: Full=30S ribosomal protein S15
 emb|CAL61985.1| 30S ribosomal subunit protein S15 [Herminiimonas arsenicoxydans]
          Length = 89

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 77/89 (86%), Positives = 82/89 (92%)

Query: 1  MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV 60
          MS+EK +KAAI+++NARG NDTGSPEVQVALLTARINDLNGHFKAH KDHHSRRGLI MV
Sbjct: 1  MSLEKTSKAAIVADNARGANDTGSPEVQVALLTARINDLNGHFKAHSKDHHSRRGLIMMV 60

Query: 61 NRRKSLLSYLKNKDADRYRALIEKLGLRK 89
          NRRKSLLSYLKNKDA RYR LI KLGLRK
Sbjct: 61 NRRKSLLSYLKNKDATRYRDLIAKLGLRK 89


>ref|YP_001353148.1| small subunit ribosomal protein S15 [Janthinobacterium sp.
          Marseille]
 sp|A6SY01|RS15_JANMA RecName: Full=30S ribosomal protein S15
 gb|ABR88596.1| small subunit ribosomal protein S15 [Janthinobacterium sp.
          Marseille]
          Length = 89

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/89 (84%), Positives = 81/89 (91%)

Query: 1  MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV 60
          MS+EKA+KAAI+++NARG NDTGSPEVQVALLTARIN+LN HFKAH KDHHSRRGLI MV
Sbjct: 1  MSLEKASKAAIVADNARGQNDTGSPEVQVALLTARINELNSHFKAHTKDHHSRRGLIMMV 60

Query: 61 NRRKSLLSYLKNKDADRYRALIEKLGLRK 89
          NRRKSLLSYLK KDA RYR LI KLGLRK
Sbjct: 61 NRRKSLLSYLKGKDATRYRDLIVKLGLRK 89