BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2136.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775172.1| translation initiation inhibitor protein [He...   230   4e-59
ref|YP_002007779.1| hypothetical protein RALTA_B1119 [Cupriavidu...   219   1e-55
ref|YP_840728.1| endoribonuclease [Ralstonia eutropha H16] >gi|1...   217   5e-55
ref|YP_004751931.1| endoribonuclease L-PSP [Collimonas fungivora...   214   2e-54
ref|YP_586904.1| endoribonuclease L-PSP [Cupriavidus metallidura...   214   5e-54

>ref|YP_003775172.1| translation initiation inhibitor protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63264.1| translation initiation inhibitor (yjgF family) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 127

 Score =  230 bits (587), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 125/127 (98%), Positives = 125/127 (98%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQV MENGEVIDGGIVAQSHKAIQNV
Sbjct: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVAMENGEVIDGGIVAQSHKAIQNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           LAILKEAGYGPEHVVRCGVWLDDARDF SFNKVFKEYFGANPPARACVVSSMVVDCKVEV
Sbjct: 61  LAILKEAGYGPEHVVRCGVWLDDARDFQSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120

Query: 121 DCVAFKR 127
           DCVAFKR
Sbjct: 121 DCVAFKR 127


>ref|YP_002007779.1| hypothetical protein RALTA_B1119 [Cupriavidus taiwanensis LMG
           19424]
 ref|YP_004681375.1| endoribonuclease [Cupriavidus necator N-1]
 emb|CAQ71722.1| conserved hypothetical protein, endoribonuclease L-PSP domain
           [Cupriavidus taiwanensis LMG 19424]
 gb|AEI80143.1| endoribonuclease [Cupriavidus necator N-1]
          Length = 130

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/127 (86%), Positives = 120/127 (94%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           M I+RFGVEGG+GTGGQH+PFARAVAADGWLYVSGQVPM NGEVIDGGIV Q+H+AI+NV
Sbjct: 1   MDIKRFGVEGGTGTGGQHMPFARAVAADGWLYVSGQVPMVNGEVIDGGIVPQTHQAIKNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           LAIL EAGYGPEHVVRCGVWLDD RDF SFNK+FKEYFGANPPARACV SSMVVDCKVEV
Sbjct: 61  LAILAEAGYGPEHVVRCGVWLDDTRDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEV 120

Query: 121 DCVAFKR 127
           DC+A+K+
Sbjct: 121 DCIAYKK 127


>ref|YP_840728.1| endoribonuclease [Ralstonia eutropha H16]
 emb|CAJ95998.1| Endoribonuclease [Ralstonia eutropha H16]
          Length = 130

 Score =  217 bits (552), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 109/127 (85%), Positives = 120/127 (94%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           M I+RFGVEGG+GTGGQH+PFARAVAADGWLYVSGQVPM +GEVIDGGIV Q+H+AI+NV
Sbjct: 1   MDIKRFGVEGGTGTGGQHMPFARAVAADGWLYVSGQVPMVSGEVIDGGIVPQTHQAIKNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           LAIL EAGYGPEHVVRCGVWLDD RDF SFNK+FKEYFGANPPARACV SSMVVDCKVEV
Sbjct: 61  LAILAEAGYGPEHVVRCGVWLDDTRDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEV 120

Query: 121 DCVAFKR 127
           DC+A+K+
Sbjct: 121 DCIAYKK 127


>ref|YP_004751931.1| endoribonuclease L-PSP [Collimonas fungivorans Ter331]
 gb|AEK61108.1| Endoribonuclease L-PSP [Collimonas fungivorans Ter331]
          Length = 127

 Score =  214 bits (546), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 112/127 (88%), Positives = 120/127 (94%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           M+I+R+GVEGGSGTGGQHLPFARAV ADGWLYVSGQV M +GEVIDGGIVAQSHK IQNV
Sbjct: 1   MTIKRYGVEGGSGTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSHKTIQNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           LAILKEAGYGPEHVVRCGVWLDD RDF SFN+VFKEYFGANPPARACV SSMVVDCKVEV
Sbjct: 61  LAILKEAGYGPEHVVRCGVWLDDTRDFQSFNRVFKEYFGANPPARACVQSSMVVDCKVEV 120

Query: 121 DCVAFKR 127
           DC+A+K+
Sbjct: 121 DCIAYKK 127


>ref|YP_586904.1| endoribonuclease L-PSP [Cupriavidus metallidurans CH34]
 gb|ABF11635.1| putative endoribonuclease L-PSP [Cupriavidus metallidurans CH34]
          Length = 130

 Score =  214 bits (544), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 110/127 (86%), Positives = 119/127 (93%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           M I+RFGVEGG+G GG H+PFARAV ADGWLYVSGQVPM NGEVIDGGIVAQSH+AIQNV
Sbjct: 1   MDIKRFGVEGGTGQGGSHMPFARAVQADGWLYVSGQVPMVNGEVIDGGIVAQSHQAIQNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           +AIL EAGYGPEHVVRCGVWLDDARDF SFNK+FKEYFGANPPARACV SSMVVDCKVEV
Sbjct: 61  MAILAEAGYGPEHVVRCGVWLDDARDFTSFNKIFKEYFGANPPARACVQSSMVVDCKVEV 120

Query: 121 DCVAFKR 127
           DC+A+K+
Sbjct: 121 DCIAYKK 127