BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2133.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775170.1| transcription regulator protein [Herbaspiril... 522 e-146 ref|YP_004751929.1| RpiR family transcriptional regulator [Colli... 384 e-104 ref|YP_586902.1| RpiR family transcriptional regulator [Cupriavi... 347 1e-93 ref|YP_298221.1| RpiR family transcriptional regulator [Ralstoni... 343 1e-92 ref|YP_840730.1| transcriptional regulator [Ralstonia eutropha H... 337 9e-91 >ref|YP_003775170.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63262.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 289/294 (98%), Positives = 291/294 (98%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLAAAASASIGELAGKAGVSVASVTRFAK 60 MAQTLDIISRITERSSTLRLAEQKVAEAILGDL AAASASIGELA KAGVSVASVTRFAK Sbjct: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLHAAASASIGELADKAGVSVASVTRFAK 60 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNP 120 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLN Sbjct: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNA 120 Query: 121 DMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVATYHDAVLQKMVAATLD 180 DMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVA+YHDAVLQKMVAATLD Sbjct: 121 DMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAATLD 180 Query: 181 KDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKMADVLLPIKTLETDLIF 240 KDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAK+ADVLLPIKTLETDLIF Sbjct: 181 KDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKLADVLLPIKTLETDLIF 240 Query: 241 KPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 KPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD Sbjct: 241 KPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 >ref|YP_004751929.1| RpiR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61106.1| transcriptional regulator, RpiR family [Collimonas fungivorans Ter331] Length = 293 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 213/294 (72%), Positives = 243/294 (82%), Gaps = 1/294 (0%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLAAAASASIGELAGKAGVSVASVTRFAK 60 M Q DI+SRI ERSS LRLAEQKVA+AIL DL AASASI LA +AGVS ASVTRFAK Sbjct: 1 MTQLFDIVSRIAERSSQLRLAEQKVAQAILSDLPFAASASIQTLARQAGVSEASVTRFAK 60 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNP 120 A+GCRDVRE K LAQA A+GQRF +V Q P++ D+VY DIH LE+NR++L+ Sbjct: 61 AIGCRDVRELKMRLAQAAAIGQRFLRTENSVAENQFPQIVDIVYADIHKSLEVNRSLLSQ 120 Query: 121 DMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVATYHDAVLQKMVAATLD 180 D L+QAA LL ARMIY FGMGGGSTM+SDEARYRLVRLGRPVATYHDA+LQKMVAATLD Sbjct: 121 DNLLQAARALLQARMIYAFGMGGGSTMLSDEARYRLVRLGRPVATYHDAMLQKMVAATLD 180 Query: 181 KDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKMADVLLPIKTLETDLIF 240 KDDV+L STTG+VPEL ASC +A+EYGV+L+AITALGSPLA MADVLLP+K+LETD IF Sbjct: 181 KDDVILALSTTGNVPELNASCAIAKEYGVRLVAITALGSPLAAMADVLLPLKSLETDFIF 240 Query: 241 KPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 KPSSSRYAMM LD+L+ ELALL K+ SQE LRRLK+ LD HRGGG+ +PLGD Sbjct: 241 KPSSSRYAMMMALDVLMTELALLQKDHSQELLRRLKFTLDTHRGGGN-REPLGD 293 >ref|YP_586902.1| RpiR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11633.1| putative transcriptional regulator of the RpiR family [Cupriavidus metallidurans CH34] Length = 301 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 196/301 (65%), Positives = 234/301 (77%), Gaps = 7/301 (2%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLAAAASASIGELAGKAGVSVASVTRFAK 60 M DI++RI ER +LRLAEQKVA+ IL DLA AA+ASI ELA KA VS ASVTRFAK Sbjct: 1 MTAPFDILTRIAERGPSLRLAEQKVAQVILEDLAGAAAASINELARKAAVSEASVTRFAK 60 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAK-TVPSEQPPELADVVYRDIHAVLELNRAMLN 119 A+GCRDVR+ K LAQA AVG RF A V ++ P LA+ ++ D+ A LE+NR +++ Sbjct: 61 AIGCRDVRDLKLRLAQATAVGSRFLQPAPGPVDTDAPAALAERIHADVLATLEVNRKLID 120 Query: 120 PDMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVATYHDAVLQKMVAATL 179 P+ + AA LLL ARM+Y FGMGGGST M+DEARYRL RLG PVATYHDA+LQKMVAATL Sbjct: 121 PERIDIAARLLLNARMVYAFGMGGGSTFMADEARYRLARLGHPVATYHDALLQKMVAATL 180 Query: 180 DKDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKMADVLLPIKTLETDLI 239 +DDV+L FS +GSVPE+LASC++AREYG +LIA+TALGSPLA ADVLLP++TLETD I Sbjct: 181 TRDDVVLAFSASGSVPEILASCDIAREYGARLIAVTALGSPLAARADVLLPVRTLETDFI 240 Query: 240 FKPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRG------GGDLHQPLG 293 FKPS+SRYAM+ LD+L ALL +E S+E+LRRLKYVLDAHRG G D QPLG Sbjct: 241 FKPSASRYAMLMVLDVLSTRFALLQQEQSKEKLRRLKYVLDAHRGVSQDSDGPDSRQPLG 300 Query: 294 D 294 D Sbjct: 301 D 301 >ref|YP_298221.1| RpiR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ63377.1| transcriptional regulator, RpiR family [Ralstonia eutropha JMP134] Length = 306 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 192/306 (62%), Positives = 235/306 (76%), Gaps = 12/306 (3%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLAAAASASIGELAGKAGVSVASVTRFAK 60 M DI++RI ER LRLAEQKVA+ +L DLA AA+ASI ELA KAGVS ASVTRFAK Sbjct: 1 MTAPFDILTRIAERGPALRLAEQKVAQVVLEDLAGAAAASINELARKAGVSEASVTRFAK 60 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFD-GAKTVPSEQPPELADVVYRDIHAVLELNRAMLN 119 A+GCRDVR+ K LAQA AVG RF D P++ P +AD ++ D+ LE+NR +++ Sbjct: 61 AIGCRDVRDLKLRLAQATAVGMRFLDPDGVPAPADAPATVADRIHADVLTALEVNRKLID 120 Query: 120 PDMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVATYHDAVLQKMVAATL 179 D + QAA LLLGARM+Y FGMGGGS++M+DEAR+RL RLG+PVA+Y D +LQKMVAATL Sbjct: 121 TDRMEQAARLLLGARMVYAFGMGGGSSIMADEARHRLARLGQPVASYQDGLLQKMVAATL 180 Query: 180 DKDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKMADVLLPIKTLETDLI 239 +DDV+L FS +GSVPE+LASC++AREYG KL+A+TALGSPLA ADVLLP++TLETD I Sbjct: 181 SRDDVVLAFSASGSVPEMLASCDIAREYGAKLVAVTALGSPLAARADVLLPVRTLETDFI 240 Query: 240 FKPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRG-----------GGDL 288 FKPS+SRYAM+ LD+L + ALL ++ S+ERLRRLKYVLDAHRG G D Sbjct: 241 FKPSASRYAMLLVLDVLATQCALLQQDQSKERLRRLKYVLDAHRGPAGERGPDSGAGPDG 300 Query: 289 HQPLGD 294 QPLGD Sbjct: 301 RQPLGD 306 >ref|YP_840730.1| transcriptional regulator [Ralstonia eutropha H16] emb|CAJ96000.1| transcriptional regulator [Ralstonia eutropha H16] Length = 301 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 191/301 (63%), Positives = 230/301 (76%), Gaps = 7/301 (2%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLAAAASASIGELAGKAGVSVASVTRFAK 60 M DI++RI ER LRLAEQKVA+ +L DLA AA+ASI ELA KAGVS ASVTRFAK Sbjct: 1 MTAPFDILTRIAERGPALRLAEQKVAQVVLEDLAGAAAASINELARKAGVSEASVTRFAK 60 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFD-GAKTVPSEQPPELADVVYRDIHAVLELNRAMLN 119 A+GCRDVR+ K LAQA AVG RF G+ P LAD ++ DI LE+NR M++ Sbjct: 61 AIGCRDVRDLKLRLAQATAVGARFLQPGSVPAGEATPATLADSIHADILTALEVNRGMMD 120 Query: 120 PDMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVATYHDAVLQKMVAATL 179 + QAA LLLGARM+Y FGMGGGS+ M+DEAR+RL RLG+PVA+Y DA+LQKMVAATL Sbjct: 121 AQRIEQAARLLLGARMVYAFGMGGGSSFMADEARHRLARLGQPVASYQDALLQKMVAATL 180 Query: 180 DKDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKMADVLLPIKTLETDLI 239 +DDV+L FS +G VPE+LASC++AREYG +L+A+TALGSPLA ADVLLP++TLETD I Sbjct: 181 GRDDVVLAFSASGRVPEMLASCDIAREYGARLVAVTALGSPLAARADVLLPVRTLETDFI 240 Query: 240 FKPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRG------GGDLHQPLG 293 FKPS+SRYAM+ LD+L + ALL + S+ERLRRLKYVLD+HRG G D QPLG Sbjct: 241 FKPSASRYAMLMVLDVLATQCALLQPDQSKERLRRLKYVLDSHRGESGPARGPDSRQPLG 300 Query: 294 D 294 D Sbjct: 301 D 301