BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2131.p (430 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775169.1| D-serine deaminase [Herbaspirillum seropedic... 797 0.0 ref|YP_004751928.1| D-serine deaminase [Collimonas fungivorans T... 614 e-174 emb|CCA81835.1| putative enzyme, amino acid aldolase or racemase... 603 e-170 ref|YP_298222.1| D-serine deaminase [Ralstonia eutropha JMP134] ... 602 e-170 ref|YP_001892721.1| D-serine deaminase [Ralstonia pickettii 12J]... 602 e-170 >ref|YP_003775169.1| D-serine deaminase [Herbaspirillum seropedicae SmR1] gb|ADJ63261.1| D-serine deaminase (D-serine dehydratase) protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 394/430 (91%), Positives = 413/430 (96%) Query: 1 MSDTNYQSQFQAGMIDPLNKGLGALAQPLTPQQAGKVRWNLLNEDISLPAAVLYEEKIAH 60 M+DTNYQ ++AG+IDPLNKGLG L Q L P QAG VRWNLLNEDISLPAAVLYEEKIAH Sbjct: 1 MNDTNYQGAYEAGIIDPLNKGLGPLPQALPPGQAGTVRWNLLNEDISLPAAVLYEEKIAH 60 Query: 61 NLKWMQDFVGQYQVKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAAYHHGVRRVI 120 NLKWMQ+FVGQYQ+KLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLA YHHGVRRVI Sbjct: 61 NLKWMQEFVGQYQLKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAGYHHGVRRVI 120 Query: 121 MANQLVGKRNMAIIAELLADPSFEFFCLVDSAALADQLGRFFAERKQTLNVLLELGPAGG 180 MANQLVGKRNMAII+ELLADPSFEFFCLVDSAAL DQLGRFFAERKQTLNVLLELGP GG Sbjct: 121 MANQLVGKRNMAIISELLADPSFEFFCLVDSAALVDQLGRFFAERKQTLNVLLELGPTGG 180 Query: 181 RTGVRDDAQQQAVLAAIARWDSLALAGVEVYEGVLKEEADIRRFLQRAVACLKDLSAQGQ 240 RTGVRD+AQQQAVL AI+RWDS+ALAGVEVYEGVLKEE DIRRFLQRAVACL+DL+AQGQ Sbjct: 181 RTGVRDEAQQQAVLEAISRWDSIALAGVEVYEGVLKEEVDIRRFLQRAVACLQDLAAQGQ 240 Query: 241 LARRLAQGPAILTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQSQI 300 LARRLA+GPA+LTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQ+QI Sbjct: 241 LARRLARGPAVLTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQAQI 300 Query: 301 QVRNPVAHSMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPAPVTRFRPGQD 360 QVRNPVAHSMRSQLQPALQLWAYVQSIPE+DKAIIALGKRDAAFDAGLP PV+RFRPG+D Sbjct: 301 QVRNPVAHSMRSQLQPALQLWAYVQSIPESDKAIIALGKRDAAFDAGLPMPVSRFRPGRD 360 Query: 361 TQPQATPAHWEVTGMMDQHAYLKIAEGDDIQVGDMIAFDISHPCLTFDKWRHLVVVDQRF 420 T PQATPAHWEVTGMMDQHAYLKIA GDDI+VGDMIAFDISHPCLTFDKWRHLVVVD RF Sbjct: 361 TGPQATPAHWEVTGMMDQHAYLKIAAGDDIEVGDMIAFDISHPCLTFDKWRHLVVVDGRF 420 Query: 421 DVTDIVQTFF 430 DVTDIVQTFF Sbjct: 421 DVTDIVQTFF 430 >ref|YP_004751928.1| D-serine deaminase [Collimonas fungivorans Ter331] gb|AEK61105.1| D-serine deaminase [Collimonas fungivorans Ter331] Length = 442 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 312/430 (72%), Positives = 347/430 (80%), Gaps = 5/430 (1%) Query: 5 NYQSQFQAGMIDPLNKGLGALAQPLTPQQAGKVRWNLLNEDISLPAAVLYEEKIAHNLKW 64 NY S +Q +IDPLNKGLGA Q L + WNLL ED+SLP AVLYEE++ HNL+W Sbjct: 14 NYHSDYQNPLIDPLNKGLGAFQQALPAAEVKAHNWNLLREDLSLPTAVLYEERMTHNLQW 73 Query: 65 MQDFVGQYQVKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAAYHHGVRRVIMANQ 124 MQ FV +Y VKLAPHGKTTMAPKLFARQL GAWGITLATAHQT A HGV+RVIMANQ Sbjct: 74 MQQFVTEYGVKLAPHGKTTMAPKLFARQLAGGAWGITLATAHQTRVARQHGVQRVIMANQ 133 Query: 125 LVGKRNMAIIAELLADPSFEFFCLVDSAALADQLGRFFAERKQTLNVLLELGPAGGRTGV 184 LVGK+NMAII++LLADPSF F CLVDSA DQLG FF RKQ L+VLLELGP GGRTG+ Sbjct: 134 LVGKQNMAIISDLLADPSFAFCCLVDSADGVDQLGAFFQARKQQLHVLLELGPDGGRTGI 193 Query: 185 RDDAQQQAVLAAIARW-DSLALAGVEVYEGVLKEEADIRRFLQRAVACLKDLSAQGQLAR 243 R+ QQ+AVLAA+ARW +SL LAGVEVYEGVLKEEADIR FLQ AVAC K L+ G+ A Sbjct: 194 RNPQQQEAVLAALARWPESLVLAGVEVYEGVLKEEADIRGFLQHAVACAKQLAKDGRFAA 253 Query: 244 RLAQG---PAILTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQSQI 300 R A P ILTGAGSAWYDVVAEEF + DIG LDVVLRPGCYLTHDVGIYRAAQ+QI Sbjct: 254 RTAGSAAQPVILTGAGSAWYDVVAEEFAKTDIGLPLDVVLRPGCYLTHDVGIYRAAQAQI 313 Query: 301 QVRNPVAHSMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPAPVTRFRPGQD 360 Q RNP+A MR++L PALQLWAYVQSIPE KAIIALGKRDAAFDAGLP P +RPG Sbjct: 314 QTRNPIARKMRTELLPALQLWAYVQSIPETGKAIIALGKRDAAFDAGLPLPAAHYRPGSP 373 Query: 361 TQPQATPAHWEVTGMMDQHAYLKIAEGDDIQVGDMIAFDISHPCLTFDKWRHLVVVDQRF 420 P ATPAHW++TGMMDQHAYL+I EGD+I+VGDMI FDISHPCLTFDKWR + V+D R Sbjct: 374 A-PTATPAHWQLTGMMDQHAYLQITEGDNIKVGDMIGFDISHPCLTFDKWRQIAVLDPRH 432 Query: 421 DVTDIVQTFF 430 V D++QTFF Sbjct: 433 QVVDVIQTFF 442 >emb|CCA81835.1| putative enzyme, amino acid aldolase or racemase domain [blood disease bacterium R229] Length = 425 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 303/431 (70%), Positives = 349/431 (80%), Gaps = 7/431 (1%) Query: 1 MSDTNYQSQFQAGMIDPLNKGLGALAQPLTPQQAGKVRWNLLNEDISLPAAVLYEEKIAH 60 MSDT YQ A ++ PL+KGLGALA TP+Q RWN+LNED++LPAAVL ++ H Sbjct: 1 MSDTKYQGD-AATVVSPLDKGLGALAAACTPEQVAAQRWNVLNEDLNLPAAVLSHSRLEH 59 Query: 61 NLKWMQDFVGQYQVKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAAYHHGVRRVI 120 NL WMQ FVG+Y KLAPHGKTTMAP+LF RQL GAWGITLATAHQT AY HGVRRV+ Sbjct: 60 NLAWMQRFVGEYGAKLAPHGKTTMAPRLFQRQLAGGAWGITLATAHQTRIAYVHGVRRVL 119 Query: 121 MANQLVGKRNMAIIAELLADPSFEFFCLVDSAALADQLGRFFAERKQTLNVLLELGPAGG 180 MANQL+GKRNMAI+AELLADPSFEFFCLVD+A DQL FF + + + VL+ELG GG Sbjct: 120 MANQLIGKRNMAILAELLADPSFEFFCLVDAADKVDQLAAFFGKAGRPIQVLIELGELGG 179 Query: 181 RTGVRDDAQQQAVLAAIARWD-SLALAGVEVYEGVLKEEADIRRFLQRAVACLKDLSAQG 239 RTGVRDDAQ Q+VL A+ R D ++ LAGVEVYEGVLKEE +IR FL+RAV DL+A G Sbjct: 180 RTGVRDDAQLQSVLEALVRADGAVRLAGVEVYEGVLKEEGEIRAFLRRAVKVFGDLAAAG 239 Query: 240 QLARRLAQGPAILTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQSQ 299 +L R P +LTGAGSAWYDVVAEEF +ADIG D+VLRPGCYLTHDVGIY+AAQ+Q Sbjct: 240 RLQRT----PPVLTGAGSAWYDVVAEEFSKADIGQPFDLVLRPGCYLTHDVGIYKAAQAQ 295 Query: 300 IQVRNPVAHSMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPAPVTRFRPGQ 359 I VRNPVAH MRS L PALQ+WAYVQS+PE ++AI+ALGKRDAAFDAG P PV R+RPG Sbjct: 296 INVRNPVAHKMRSSLLPALQVWAYVQSVPEPERAIVALGKRDAAFDAGFPLPVQRYRPG- 354 Query: 360 DTQPQATPAHWEVTGMMDQHAYLKIAEGDDIQVGDMIAFDISHPCLTFDKWRHLVVVDQR 419 D P ATPAHWEV+GMMDQHAYLKIA GDDI+VGDMIAFDISHPCLTFDKWR + V+D Sbjct: 355 DASPTATPAHWEVSGMMDQHAYLKIAAGDDIKVGDMIAFDISHPCLTFDKWRQIPVIDDA 414 Query: 420 FDVTDIVQTFF 430 ++V D+VQT+F Sbjct: 415 YNVVDVVQTYF 425 >ref|YP_298222.1| D-serine deaminase [Ralstonia eutropha JMP134] gb|AAZ63378.1| dsd, RSp1185; probable D-serine deaminase (d-serine dehydratase) protein [Ralstonia eutropha JMP134] Length = 422 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 297/423 (70%), Positives = 345/423 (81%), Gaps = 6/423 (1%) Query: 9 QFQAGMIDPLNKGLGALAQPLTPQQAGKVRWNLLNEDISLPAAVLYEEKIAHNLKWMQDF 68 ++QAG IDPLNK LG L P+ P+ AG+ WNLL E++SLPAAVLYE+++AHNL+WM F Sbjct: 5 KYQAGTIDPLNKALGRLEAPIAPENAGQTGWNLLREELSLPAAVLYEDRLAHNLEWMNRF 64 Query: 69 VGQYQVKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAAYHHGVRRVIMANQLVGK 128 +G+Y V+LAPHGKTTMAPKLFARQL GAWGITLATAHQT AAY HGVRRV+MANQLVG+ Sbjct: 65 MGEYGVQLAPHGKTTMAPKLFARQLGAGAWGITLATAHQTAAAYAHGVRRVLMANQLVGR 124 Query: 129 RNMAIIAELLADPSFEFFCLVDSAALADQLGRFFAERKQTLNVLLELGPAGGRTGVRDDA 188 RNM IIA+LL DP FEFF LVDSA L DQLG +F ER Q L VLLELG GGRTGVRD A Sbjct: 125 RNMEIIADLLRDPGFEFFSLVDSADLVDQLGAYFRERGQKLQVLLELGVEGGRTGVRDAA 184 Query: 189 QQQAVLAAIARW-DSLALAGVEVYEGVLKEEADIRRFLQRAVACLKDLSAQGQLARRLAQ 247 QQ VLAA+ARW D+L+LAGVE+YEGVLKEEADIRRFLQR VA ++++ +G R + Sbjct: 185 QQADVLAALARWPDALSLAGVEIYEGVLKEEADIRRFLQRTVAVTREIAQEG----RFGR 240 Query: 248 GPAILTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQSQIQVRNPVA 307 P +++GAGSAWYDVVAEEF + +IG +++VLRPGCYLTHDVGIY+AAQ +I NPVA Sbjct: 241 SPVVMSGAGSAWYDVVAEEFARTEIGTPIEIVLRPGCYLTHDVGIYKAAQERILASNPVA 300 Query: 308 HSMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPAPVTRFRPGQDTQPQATP 367 MR L PALQLWAYVQS+PE ++AII +GKRDAAFDAG+P P +RPG D P A P Sbjct: 301 QKMREGLLPALQLWAYVQSVPEPERAIIGMGKRDAAFDAGMPTPAAIYRPGSDA-PLAVP 359 Query: 368 AHWEVTGMMDQHAYLKIAEGDDIQVGDMIAFDISHPCLTFDKWRHLVVVDQRFDVTDIVQ 427 AHWEVTGMMDQHAYL+I GDDI+VGDMIAFDISHPCLTFDKWRH+ V+D V DIVQ Sbjct: 360 AHWEVTGMMDQHAYLQIRAGDDIRVGDMIAFDISHPCLTFDKWRHIPVLDGDMRVIDIVQ 419 Query: 428 TFF 430 TFF Sbjct: 420 TFF 422 >ref|YP_001892721.1| D-serine deaminase [Ralstonia pickettii 12J] ref|YP_002984222.1| alanine racemase domain-containing protein [Ralstonia pickettii 12D] gb|ACD29294.1| putative D-serine deaminase (D-serine dehydratase) protein [Ralstonia pickettii 12J] gb|ACS65550.1| alanine racemase domain protein [Ralstonia pickettii 12D] Length = 425 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 304/431 (70%), Positives = 350/431 (81%), Gaps = 7/431 (1%) Query: 1 MSDTNYQSQFQAGMIDPLNKGLGALAQPLTPQQAGKVRWNLLNEDISLPAAVLYEEKIAH 60 MSDT YQ A +++PL+KGLGAL P+Q RWN+LNED++LPAAVL + ++ H Sbjct: 1 MSDTKYQGDANA-VVNPLDKGLGALEAACAPEQIAAQRWNVLNEDLNLPAAVLSQSRVEH 59 Query: 61 NLKWMQDFVGQYQVKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAAYHHGVRRVI 120 NL WMQ FV +Y KLAPHGKTTMAP+LF RQL GAWGITLATAHQT AY HGVRRV+ Sbjct: 60 NLAWMQRFVSEYGAKLAPHGKTTMAPRLFQRQLAGGAWGITLATAHQTRIAYAHGVRRVL 119 Query: 121 MANQLVGKRNMAIIAELLADPSFEFFCLVDSAALADQLGRFFAERKQTLNVLLELGPAGG 180 MANQLVGKRNMAI+AELLADP+FEFFCLVD+A DQL FF + + + VL+ELG GG Sbjct: 120 MANQLVGKRNMAILAELLADPTFEFFCLVDAADQVDQLAAFFGKTGRPIQVLIELGVQGG 179 Query: 181 RTGVRDDAQQQAVLAAIARWD-SLALAGVEVYEGVLKEEADIRRFLQRAVACLKDLSAQG 239 RTGVRDDAQ Q+VL A+ R + ++ LAGVEVYEGV+KEEADIR FLQRAV + DL+ G Sbjct: 180 RTGVRDDAQLQSVLDALTRANGAVKLAGVEVYEGVIKEEADIRTFLQRAVKVMGDLAKGG 239 Query: 240 QLARRLAQGPAILTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQSQ 299 +L R PA+LTGAGSAWYDVVAEEF +A+IG LDVVLRPGCYLTHDVGIYRAAQ++ Sbjct: 240 RLQRT----PAVLTGAGSAWYDVVAEEFAKANIGQPLDVVLRPGCYLTHDVGIYRAAQTR 295 Query: 300 IQVRNPVAHSMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPAPVTRFRPGQ 359 I NP+AH MRS L PALQLWAYVQS+PEA++AIIA+GKRDAAFDAGLP PV FRPG Sbjct: 296 IDANNPIAHKMRSSLLPALQLWAYVQSVPEAERAIIAMGKRDAAFDAGLPLPVLHFRPG- 354 Query: 360 DTQPQATPAHWEVTGMMDQHAYLKIAEGDDIQVGDMIAFDISHPCLTFDKWRHLVVVDQR 419 D P ATPAHWEVTGMMDQHAYLKIA GDDI+VGDMIAFDISHPCLTFDKWR + VVD Sbjct: 355 DKTPSATPAHWEVTGMMDQHAYLKIAPGDDIKVGDMIAFDISHPCLTFDKWRQISVVDDA 414 Query: 420 FDVTDIVQTFF 430 ++V D+VQT+F Sbjct: 415 YNVVDVVQTYF 425