BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2128.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedica... 624 e-176 ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedica... 302 7e-80 ref|YP_935409.1| hypothetical protein azo3907 [Azoarcus sp. BH72... 292 6e-77 ref|YP_004514782.1| type 11 methyltransferase [Methylomonas meth... 286 4e-75 ref|YP_001793098.1| type 12 methyltransferase [Leptothrix cholod... 280 3e-73 >ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63259.1| methyltransferase (contains TPR repeat) protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 323/441 (73%), Positives = 359/441 (81%) Query: 2 PEQQTTQIQPPHAARLNAAIDAHMAGRREEARAVYEAVLEDDPIEPVALHFYGIWLHQAG 61 P Q + + A L AIDAHMAGR ++A A+YEAVLE DPI P+ALH+YGIWLHQ G Sbjct: 7 PTQDPARAGAHYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDG 66 Query: 62 RHAEALDKLELSSALEPENAAWHNDLGNVLFALGDLDGAAQAYGTALEVAPADHTIWNNL 121 +H EALDKLEL+SALEP+NA WHND GNVLFAL A QAY AL + P DHTIWNNL Sbjct: 67 QHDEALDKLELASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNL 126 Query: 122 GATHMQRGRNEEAIAAFQRAVEIAPEFLPALLHLGNLFEAAGDKMQASHYQCRAYVLPPM 181 GA +Q+ + +AI+AF+RA++I P+FLP+LLHLG + EAAGDKMQASHYQCRAYVLPP+ Sbjct: 127 GAVLLQQDKRPDAISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPL 186 Query: 182 EGKSWEMVGISFYFLGRLEEAAEAYRAWLASEPGNPIAAHMLAACSQLDVPTRASDRYLE 241 EGKSWEM+GISFYFLGRL EAAEAYRAWL EP NPIAAHMLAACSQ DVP RASDRY+E Sbjct: 187 EGKSWEMLGISFYFLGRLPEAAEAYRAWLREEPDNPIAAHMLAACSQADVPPRASDRYIE 246 Query: 242 SHFDRYAETFESNLLHSLGYRGPSLIGQGVALVTQAARQFATIDIGCGTGLCGTYLRPYS 301 SHFDRYAETFE+NLL SLGYRGP LI +G+AL+ A QFA IDIGCGTGLCG + PYS Sbjct: 247 SHFDRYAETFEANLLQSLGYRGPRLIAEGLALIAPPAHQFAAIDIGCGTGLCGGQVAPYS 306 Query: 302 HHLTGVDLAGKMLEKAAATGHYDQLEKAEITDYLLRHPQSCDLVTAADTMIYFGDLENVF 361 HHL GVDLAGKMLEKAAATGHY +LEKAEI YL HPQSCDLVTAADTMIYFGDL V Sbjct: 307 HHLVGVDLAGKMLEKAAATGHYARLEKAEIGHYLATHPQSCDLVTAADTMIYFGDLAPVM 366 Query: 362 KAVAAVLKPGGYFVFTVEVLTPQDGVEQGHRLHASGRYRHGRDYVRALLQAQGMEPLHQR 421 +AVA L+ GG+FVFTVE LT D QGH LHASGRYRHGRDYVR LLQA G LH Sbjct: 367 QAVALALRSGGHFVFTVEALTGADVAPQGHALHASGRYRHGRDYVRGLLQAHGFTLLHDS 426 Query: 422 DEVLREEVRQPVAGMLFVARR 442 D++LREEVRQPVAGMLFVARR Sbjct: 427 DQILREEVRQPVAGMLFVARR 447 >ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ64723.1| methyltransferase (contains TPR repeat) protein [Herbaspirillum seropedicae SmR1] Length = 439 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 184/416 (44%), Positives = 245/416 (58%), Gaps = 3/416 (0%) Query: 27 GRREEARAVYEAVLEDDPIEPVALHFYGIWLHQAGRHAEALDKLELSSALEPENAAWHND 86 GR EEA Y L + H+ G+ LHQ GRH E + + ++ P +A W ND Sbjct: 27 GRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRHEEGVTLMRQAALAAPADADWCND 86 Query: 87 LGNVLFALGDLDGAAQAYGTALEVAPADHTIWNNLGATHMQRGRNEEAIAAFQRAVEIAP 146 +GNVLFA D AAQAY AL + P D +W NLGAT +G+++ AIAA ++A+ AP Sbjct: 87 IGNVLFACSRFDEAAQAYQQALALRPDDAQLWTNLGATRRAQGQHQAAIAACEQALATAP 146 Query: 147 EFLPALLHLGNLFEAAGDKMQASHYQCRAYVLPPMEGKSWEMVGISFYFLGRLEEAAEAY 206 L AL L + GD+MQ+S YQC A+VLPP EGKS E++ ISFYFLGR+ EAAE Sbjct: 147 HSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEGKSRELLAISFYFLGRVAEAAEVC 206 Query: 207 RAWLASEPGNPIAAHMLAACSQLDVPTRASDRYLESHFDRYAETFESNLLHSLGYRGPSL 266 R WL EPG+PIA HM AA + L T D Y+ FD YA+ F+SNL+ L YRGP + Sbjct: 207 RRWLQEEPGHPIANHMHAAYAGLPSHTVPRD-YIVRRFDDYADHFDSNLVTHLDYRGPQV 265 Query: 267 IGQGVALVTQAARQFATIDIGCGTGLCGTYLRPYSHHLTGVDLAGKMLEKAAATGHYDQL 326 + + A +D GCGTGLC L PY+ L GVDL+ ML AA G Y L Sbjct: 266 LNAVLQASLPANADMRVLDAGCGTGLCAPVLAPYALSLEGVDLSSNMLRHAAQHGRYSTL 325 Query: 327 EKAEITDYLLRHPQSCDLVTAADTMIYFGDLENVFKAVAAVLKPGGYFVFTVEVLTPQDG 386 +A++ +++ HP L+ A D +IY G L + F A L+ GG+ VFTVE+ + Sbjct: 326 AQADVVEWMTAHPSRYALIAACDVLIYCGQLASFFTAAQLALQEGGHLVFTVELAGAER- 384 Query: 387 VEQGHRLHASGRYRHGRDYVRALLQAQGMEPLHQRDEVLREEVRQPVAGMLFVARR 442 + LHASGR+RH R Y+ L A GM+ + R+E LR E++Q V G++ +ARR Sbjct: 385 -PDSYYLHASGRFRHQRAYIEDCLHAAGMQVVMLREESLRVEMQQAVPGLVVLARR 439 >ref|YP_935409.1| hypothetical protein azo3907 [Azoarcus sp. BH72] emb|CAL96523.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 449 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 187/444 (42%), Positives = 245/444 (55%), Gaps = 10/444 (2%) Query: 1 MPEQQTTQIQPPHAARLNAAIDAHMAGRREEARAVYEAVLEDDPIEPVALHFYGIWLHQA 60 +P + T A RL H G + A +Y VL+ P P AL+F I HQ Sbjct: 10 LPSEMTLDDALAFATRL------HRIGELDAAETIYRRVLDVVPEHPDALNFLAIARHQR 63 Query: 61 GRHAEALDKLELSSALEPENAAWHNDLGNVLFALGDLDGAAQAYGTALEVAPADHTIWNN 120 G E++ + S AL P+ N+LGN+L LG D A AY L +AP + + NN Sbjct: 64 GEVEESITLMRRSLALRPDAPGVWNNLGNILLDLGYFDDAGDAYEECLRLAPDEPLVRNN 123 Query: 121 LGATHMQRGRNEEAIAAFQRAVEIAPEFLPALLHLGNLFEAAGDKMQASHYQCRAYVLPP 180 LG +GR EEA AA++ + P+ + A +LGNL G +A + C + L P Sbjct: 124 LGVLRRSQGRLEEAEAAYRDVLARDPKNIDAHNNLGNLLAGLGRIEEAVRHYCESVTLMP 183 Query: 181 MEGKSWEMVGISFYFLGRLEEAAEAYRAWLASEPGNPIAAHMLAACSQLDVPTRASDRYL 240 +M+G ++Y LGR EEAAE YR WLA+EP N A H LAAC+ DVPTRASD Y+ Sbjct: 184 ANPAVRKMLGYAYYMLGRYEEAAEFYRNWLAAEPDNATARHHLAACTGQDVPTRASDVYV 243 Query: 241 ESHFDRYAETFESNLLHSLGYRGPSLIGQGVA-LVTQAARQFATIDIGCGTGLCGTYLRP 299 ES FD +AE+F++ L +L YR P L+ VA + RQ +D GCGTGLCG L P Sbjct: 244 ESVFDGFAESFDAKLA-ALTYRAPQLVAGEVARRCGEGRRQLDILDAGCGTGLCGPLLAP 302 Query: 300 YSHHLTGVDLAGKMLEKAAATGHYDQLEKAEITDYLL-RHPQSCDLVTAADTMIYFGDLE 358 ++ L GVDL+ ML+KAAA YD L KAE+T +L S DL+ +ADT+ YFG L+ Sbjct: 303 HARRLVGVDLSQPMLDKAAARKVYDALVKAELTAFLQGTEADSQDLIVSADTLCYFGALD 362 Query: 359 NVFKAVAAVLKPGGYFVFTVEVLTPQDGVEQGHRLHASGRYRHGRDYVRALLQAQGMEPL 418 VF A A L+ G VFTVE+ P+ G E G+RL GRY H YV L G + Sbjct: 363 AVFGAAARALRGNGTLVFTVELSAPEGG-EHGYRLAPHGRYTHAAGYVTGELARAGFGDI 421 Query: 419 HQRDEVLREEVRQPVAGMLFVARR 442 + LR E +PV G+L ARR Sbjct: 422 SCVETDLRTEGGKPVRGLLCAARR 445 >ref|YP_004514782.1| type 11 methyltransferase [Methylomonas methanica MC09] gb|AEG02283.1| Methyltransferase type 11 [Methylomonas methanica MC09] Length = 445 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 164/444 (36%), Positives = 252/444 (56%), Gaps = 11/444 (2%) Query: 6 TTQIQPPHAA-----RLNAAIDAHMAGRREEARAVYEAVLEDDPIEPVALHFYGIWLHQA 60 T++ QP A L AI H A ++A +Y +LE P P ALHF G+ +HQ Sbjct: 2 TSKDQPAAKALDLDYALALAIRLHQARELDDAEELYRTILEQHPRFPEALHFLGLLMHQK 61 Query: 61 GRHAEALDKLELSSALEPENAAWHNDLGNVLFALGDLDGAAQAYGTALEVAPADHTIWNN 120 G + +A+ +E + A P + HN+LGN+ L D + AAQ+Y AL++ P + +NN Sbjct: 62 GDNQQAIGLIEQAIAEAPAYSDAHNNLGNIFNRLEDFEKAAQSYSQALDLNPENVAAFNN 121 Query: 121 LGATHMQRGRNEEAIAAFQRAVEIAPEFLPALLHLGNLFEAAGDKMQASHYQCRAYVLPP 180 G Q R ++AI AF +A+ + PE +LGN ++ G+ + + L P Sbjct: 122 FGVVLSQLARIDDAIEAFTKAIALMPENAEFYRNLGNAYKKQGEFGKCIEAYRKVIGLKP 181 Query: 181 MEGKSWEMVGISFYFLGRLEEAAEAYRAWLASEPGNPIAAHMLAACS-QLDVPTRASDRY 239 +++E + + + G+ ++A + WL +P NP+A H L + + +LD+P RASD Y Sbjct: 182 YNAENYENLCAAMWLHGKADDAIVLVKEWLEHDPENPLALHRLHSYTGELDLP-RASDEY 240 Query: 240 LESHFDRYAETFESNLLHSLGYRGPSLIGQGV-ALVTQAARQFATIDIGCGTGLCGTYLR 298 + FD +A++F+ +L L Y+ P L+ V A+ TQ +D GCGTGLCG L+ Sbjct: 241 ITQTFDGFADSFDM-VLKRLDYKAPFLVSDAVKAIFTQVGEGLDILDAGCGTGLCGPLLK 299 Query: 299 PYSHHLTGVDLAGKMLEKAAATGHYDQLEKAEITDYLLRHPQSCDLVTAADTMIYFGDLE 358 PY+ L GVDL+ KMLEKA YD L AE+T+ + +P CD++ +ADT++YFGDLE Sbjct: 300 PYAKQLVGVDLSAKMLEKAKKRACYDDLLHAELTECIASYPVKCDVIVSADTLVYFGDLE 359 Query: 359 NVFKAVAAVLKPGGYFVFTVEVLTPQDGVEQGHRLHASGRYRHGRDYVRALLQAQGMEPL 418 V AVA VL PGG+FVFTVE ++ + QG ++ GR+ H Y+++++ + G+ + Sbjct: 360 AVCGAVADVLSPGGHFVFTVE--RTEESIIQGFKIQPHGRFSHTDVYIKSVMTSAGLAII 417 Query: 419 HQRDEVLREEVRQPVAGMLFVARR 442 +LR E PV G L VAR+ Sbjct: 418 KLEKVMLRYEAGVPVDGYLVVARK 441 >ref|YP_001793098.1| type 12 methyltransferase [Leptothrix cholodnii SP-6] gb|ACB36333.1| Methyltransferase type 12 [Leptothrix cholodnii SP-6] Length = 456 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 176/448 (39%), Positives = 248/448 (55%), Gaps = 14/448 (3%) Query: 7 TQIQPPHAA---RLNAAIDAHMAGRREE----ARAVYEAVLEDDPIEPVALHFYGIWLHQ 59 T QPP L A+ + +RE A +Y VL P +P ALHF G+ LHQ Sbjct: 10 TATQPPDTPTELSLTDALRMAIEMQRERLFDGAETLYRRVLAVVPEQPDALHFLGMLLHQ 69 Query: 60 AGRHAEALDKLELSSALEPENAAWHNDLGNVLFALGDLDGAAQAYGTALEVAPADHT--- 116 GR E + +E + A EP +N+LGN+ + G++ A AY AL + PAD Sbjct: 70 RGRSDEGIAHIERALAAEPAYVGAYNNLGNIHASRGEIGNALLAYQRALALTPADSAEAA 129 Query: 117 -IWNNLGATHMQRGRNEEAIAAFQRAVEIAPEFLPALLHLGNLFEAAGDKMQASHYQCRA 175 + NNLGA H + R A + +++A+ I P + A +LG L A GD A C+A Sbjct: 130 DLHNNLGALHKVQRRWAAAQSHYEQALAIDPRHVNAHNNLGLLHAARGDLASAIRCYCQA 189 Query: 176 YVLPPMEGKSWEMVGISFYFLGRLEEAAEAYRAWLASEPGNPIAAHMLAACSQLDVPTRA 235 L P + +++GI++Y +G++ EAAE +R WLA EP +P+A HM A+CS + P RA Sbjct: 190 IELMPGNSEGRKLLGITYYTVGKIAEAAEVFRQWLADEPDHPVARHMYASCSGIHTPERA 249 Query: 236 SDRYLESHFDRYAETFESNLLHSLGYRGPSLIGQGVA-LVTQAARQFATIDIGCGTGLCG 294 +D Y+E FDR+A +FE L L Y+ P L + + A + +D GCGTGLCG Sbjct: 250 ADNYVEYTFDRFAASFEQQLNERLNYQAPQLCAALLQRRLPPPAAELVVLDAGCGTGLCG 309 Query: 295 TYLRPYSHHLTGVDLAGKMLEKAAATGHYDQLEKAEITDYLLRHPQSCDLVTAADTMIYF 354 + P++ L GVDL+ ML++A G Y L KAE+T++L P D++ +ADT+ YF Sbjct: 310 PLVAPWARTLAGVDLSRGMLDQAQTKGVYQDLYKAELTEFLRLSPDQWDVILSADTLCYF 369 Query: 355 GDLENVFKAVAAVLKPGGYFVFTVEVLTPQDGVEQGHRLHASGRYRHGRDYVRALLQAQG 414 GDL V A L+PGG VFTVE L D +++ RL GRY H ++RA+++ G Sbjct: 370 GDLHEVIGAAGRSLRPGGTLVFTVEALP--DALDRPFRLEPHGRYAHASGHLRAVVEQAG 427 Query: 415 MEPLHQRDEVLREEVRQPVAGMLFVARR 442 + L VLREE QPV G L ARR Sbjct: 428 LGLLDLDAVVLREEGGQPVHGWLVAARR 455