BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2127.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775166.1| transcription regulator protein [Herbaspiril... 897 0.0 emb|CCA88986.1| putative fused transcriptional regulator aminotr... 576 e-162 ref|YP_003753377.1| GntR family transcriptional regulator [Ralst... 574 e-161 emb|CBJ39051.1| putative fused transcriptional regulator aminotr... 573 e-161 emb|CAQ56918.1| hypothetical protein RSMK04320 [Ralstonia solana... 573 e-161 >ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63258.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 449/514 (87%), Positives = 480/514 (93%), Gaps = 3/514 (0%) Query: 1 MMTVMDTRLHLPDTT---PAAPPPATAPAALAATPDNGRQPLYRRLAEHYQGAIQSGTLV 57 M+ VMDT L + D + P T + L + P++GRQPLYRRLA+HYQ AIQ+GTLV Sbjct: 1 MIAVMDTSLLIADASGAAATPTAPTTPASLLPSAPESGRQPLYRRLADHYQSAIQAGTLV 60 Query: 58 AGDRMPSVRDLMRQHQVSLSTSLQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPK 117 AGDRMPSVRDLMRQHQVSLST+LQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPK Sbjct: 61 AGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPK 120 Query: 118 SLMAIDPEQYAGIHEKVSKYIALRQSGAPRIDLSGMTCAPELYAVETLKQAAMRALRERP 177 SL+AID Q+ GIHE+VSKYIALRQ+GAP IDLSGMTCAP+LYAVETLKQAAMRALRERP Sbjct: 121 SLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAPQLYAVETLKQAAMRALRERP 180 Query: 178 ELLTSAMPHNGNATFRQAVARRALHHGMRIDHEEVVVTHGCIEALNLALRAVAGPGDTIA 237 ELLTSAMPHNGNATFRQAVARRAL+ GMRID EEVVVTHGCIEALNLA+RAVAGPGDTIA Sbjct: 181 ELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTHGCIEALNLAMRAVAGPGDTIA 240 Query: 238 VESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKGVVVVPNLQNPLG 297 VESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIK VVVVPNLQNPLG Sbjct: 241 VESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKAVVVVPNLQNPLG 300 Query: 298 CIMPDEHKDKLVRLCEELRLPLIEDDAYTELADGNVPPSSLKSRDRSGNVIYCASLNKVL 357 CIMP++HKD+LVRLC++L+LPLIEDDAYTELADG+V PSSLKSRDR+GNVIYCASLNKVL Sbjct: 301 CIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVIYCASLNKVL 360 Query: 358 APGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQLLKEQ 417 APGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQ+LK+Q Sbjct: 361 APGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQ 420 Query: 418 RERMAESIAAYFPEGTRLNVPNGGVGLWVELPAQVCSQQLFERALLEGVGVSPGAIFSNS 477 RERMAESIAAYFPEGTRLN+PNGGVGLWVELP QVCSQQLFERAL EGVGVSPGAIFSNS Sbjct: 421 RERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAEGVGVSPGAIFSNS 480 Query: 478 NRYGHFLRICCGHPFTRELDQALRRLGSIGHSLA 511 +RYGHF+RICCGHPF RELDQALRRLG + H LA Sbjct: 481 SRYGHFVRICCGHPFNRELDQALRRLGGLVHHLA 514 >emb|CCA88986.1| putative fused transcriptional regulator aminotransferase, GntR MocR domains 2-aminoadipate transaminase [Ralstonia syzygii R24] Length = 504 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 293/475 (61%), Positives = 357/475 (75%), Gaps = 1/475 (0%) Query: 37 QPLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTSLQTLRHMEEGGWLEARP 96 QPLYR LA+HY GA++SG L G RMPSVR LMR H VSLST+LQ RH+E GWLEAR Sbjct: 29 QPLYRTLADHYLGAMRSGVLTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEAEGWLEARE 88 Query: 97 RSGYFVRQPRRSAIRPVQEPKSLMAIDPEQYAGIHEKVSKYIALRQSGAPRIDLSGMTCA 156 RSGYFVRQPRR+ + P +EP+ + DP + G+H +VS IA Q R+DLSG + A Sbjct: 89 RSGYFVRQPRRALLAPAKEPE-VATPDPAAFVGVHARVSAIIARGQQARVRVDLSGASGA 147 Query: 157 PELYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALHHGMRIDHEEVVVTH 216 LY L + A + LR RP LLT A+ NG+ + AVARRAL G+++ ++VVVTH Sbjct: 148 ATLYPSAVLNRIATQMLRTRPLLLTQAVTPNGHPDLQTAVARRALEMGVQVAPDDVVVTH 207 Query: 217 GCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELA 276 GCIEA+NLALRAVA PGDT+AVESPTY+GLLQ LE LGM+A+EIPTSP TGIS+EALE+A Sbjct: 208 GCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLGMRAVEIPTSPRTGISLEALEMA 267 Query: 277 VRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTELADGNVPPS 336 V+ YGNI+ VVVVPNLQNPLG IMPD K +L CE +PLIEDD Y+ LADG P Sbjct: 268 VQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHGIPLIEDDTYSALADGPTPLK 327 Query: 337 SLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAAD 396 ++K+ DRSGNVIYCASLNK +APG+RLGWM GGRW ERV+MLKF +R N+ W+QVTAA Sbjct: 328 AIKAWDRSGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAAR 387 Query: 397 FIASPAYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNVPNGGVGLWVELPAQVCSQQ 456 ++S AYDRH+R LRQ L+EQRERMAE+IA FP GTRL+VP GGV +WVELPA V S Sbjct: 388 LLSSGAYDRHIRTLRQTLREQRERMAEAIAGCFPAGTRLSVPAGGVAMWVELPASVSSMA 447 Query: 457 LFERALLEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRELDQALRRLGSIGHSLA 511 LFE AL G+ ++PG +FSN NR+ H+ RIC G P+T E++ AL +LG + H LA Sbjct: 448 LFETALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTAEVETALAQLGQLAHQLA 502 >ref|YP_003753377.1| GntR family transcriptional regulator [Ralstonia solanacearum PSI07] emb|CBJ52117.1| putative fused transcriptional regulator aminotransferase, GntR MocR domains 2-aminoadipate transaminase [Ralstonia solanacearum PSI07] Length = 504 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 298/497 (59%), Positives = 364/497 (73%), Gaps = 9/497 (1%) Query: 23 TAPAALA--------ATPDNGRQPLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQV 74 +APAA++ A QPLYR LA+HY GA++SG L G RMPSVR LMR H V Sbjct: 7 SAPAAMSVIELTPVSAARPRAAQPLYRTLADHYLGAMRSGVLTPGQRMPSVRTLMRTHSV 66 Query: 75 SLSTSLQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSLMAIDPEQYAGIHEKV 134 SLST+LQ RH+E GWLEAR RSGYFVRQPRR+ + PV+EP+ + DP Y G+H +V Sbjct: 67 SLSTALQVCRHLEAEGWLEARERSGYFVRQPRRALLAPVKEPE-VATPDPAAYVGVHARV 125 Query: 135 SKYIALRQSGAPRIDLSGMTCAPELYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQ 194 S IA Q R+DLSG + A LY L + A + LR RP LLT A+ NG+ + Sbjct: 126 SAIIARGQQARVRVDLSGASGAATLYPSAVLNRIATQMLRTRPLLLTQAVTPNGHPDLQT 185 Query: 195 AVARRALHHGMRIDHEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLG 254 AVARRAL G+++ ++VVVTHGCIEA+NLALRAVA PGDT+AVESPTY+GLLQ LE LG Sbjct: 186 AVARRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLG 245 Query: 255 MKALEIPTSPHTGISVEALELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEE 314 M+A+EIPTSP TGIS+EALE+AV+ YGNI+ VVVVPNLQNPLG IMPD K +L CE Sbjct: 246 MRAVEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEA 305 Query: 315 LRLPLIEDDAYTELADGNVPPSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHER 374 + LIEDD Y+ LADG P ++K+ DRSGNVIYCASLNK +APG+RLGWM GGRW ER Sbjct: 306 HEISLIEDDTYSALADGPAPLKAIKAWDRSGNVIYCASLNKTIAPGLRLGWMTGGRWQER 365 Query: 375 VKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQLLKEQRERMAESIAAYFPEGTR 434 V+MLKF +R N+ W+QVTAA ++S AYDRH+R LRQ L+EQRERMAE+IA FP GTR Sbjct: 366 VEMLKFAQSRPNDSWSQVTAARLLSSGAYDRHIRTLRQTLREQRERMAEAIAGCFPAGTR 425 Query: 435 LNVPNGGVGLWVELPAQVCSQQLFERALLEGVGVSPGAIFSNSNRYGHFLRICCGHPFTR 494 L+VP GGV +WVELP V S LFE AL G+ ++PG +FSN NR+ H+ RIC G P+T Sbjct: 426 LSVPAGGVAMWVELPVSVSSMALFETALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTA 485 Query: 495 ELDQALRRLGSIGHSLA 511 E++ AL +LG + H LA Sbjct: 486 EVETALAQLGRLAHQLA 502 >emb|CBJ39051.1| putative fused transcriptional regulator aminotransferase, GntR MocR domains 2-aminoadipate transaminase [Ralstonia solanacearum CMR15] Length = 504 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 298/493 (60%), Positives = 361/493 (73%), Gaps = 9/493 (1%) Query: 19 PPPATAPAALAATPDNGRQPLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLST 78 P PA P G QPLYR LA+HY GA++SG L G RMPSVR LMR H VSLST Sbjct: 19 PAPAVRPP--------GAQPLYRMLADHYLGAMRSGVLTPGQRMPSVRTLMRTHSVSLST 70 Query: 79 SLQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSLMAIDPEQYAGIHEKVSKYI 138 +LQ RH+E GWLEAR RSGYFVRQPRR+ + P +EP+ + DP Y G+H +VS I Sbjct: 71 ALQVCRHLEAEGWLEARERSGYFVRQPRRALLAPAKEPE-VATPDPAAYVGVHARVSAII 129 Query: 139 ALRQSGAPRIDLSGMTCAPELYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVAR 198 A R+DLSG + A LY L + A + LR RP LLT A+ NG+ + AVAR Sbjct: 130 ARGLQARARVDLSGASGAATLYPSAVLNRIATQMLRARPLLLTQAVMPNGHPDLQSAVAR 189 Query: 199 RALHHGMRIDHEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKAL 258 RAL G+++ ++VVVTHGCIEA+NLALRAVA PGDT+AVESPTY+GLLQ LE LGM+A+ Sbjct: 190 RALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLGMRAV 249 Query: 259 EIPTSPHTGISVEALELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLP 318 EIPTSP TGIS+EALE+AV+ YGNI+ VVVVPNLQNPLG IMPD K +L CE +P Sbjct: 250 EIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEANAIP 309 Query: 319 LIEDDAYTELADGNVPPSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKML 378 LIEDD Y+ L DG P ++K+ DR+GNVIYCASLNK +APG+RLGWM GGRW ERV+ML Sbjct: 310 LIEDDTYSALGDGPAPLKAIKAWDRTGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEML 369 Query: 379 KFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNVP 438 KF +R N+ W+QVTAA +AS AYDRH+R LRQ L+EQRERMAE+IA FP GTRL+VP Sbjct: 370 KFAQSRPNDSWSQVTAARLLASGAYDRHIRTLRQTLREQRERMAEAIAGCFPAGTRLSVP 429 Query: 439 NGGVGLWVELPAQVCSQQLFERALLEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRELDQ 498 GGV +WVELPA V S LFERAL G+ ++PG +FSN NR+ H+ RIC G P+T E++ Sbjct: 430 AGGVAMWVELPASVSSMALFERALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTAEVEA 489 Query: 499 ALRRLGSIGHSLA 511 AL +LG + H LA Sbjct: 490 ALAQLGQLAHRLA 502 >emb|CAQ56918.1| hypothetical protein RSMK04320 [Ralstonia solanacearum MolK2] Length = 493 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 292/473 (61%), Positives = 357/473 (75%), Gaps = 1/473 (0%) Query: 39 LYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTSLQTLRHMEEGGWLEARPRS 98 LYR LA+HY GA++SG L G RMPSVR LMR H VSLST+LQ RH+E GWLEAR RS Sbjct: 20 LYRTLADHYLGAMRSGALTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEAEGWLEARERS 79 Query: 99 GYFVRQPRRSAIRPVQEPKSLMAIDPEQYAGIHEKVSKYIALRQSGAPRIDLSGMTCAPE 158 GYFVRQPRR+ + PV+EP+ + DP Y G+H +VS +A Q R+DLSG + A Sbjct: 80 GYFVRQPRRALLAPVKEPE-VATPDPAAYVGVHARVSAIVARGQQARARVDLSGASGAAT 138 Query: 159 LYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALHHGMRIDHEEVVVTHGC 218 LY L + A + LR RP LLT A+ NG+ + AVARRAL G+++ ++VVVTHGC Sbjct: 139 LYPSAALNRIATQMLRTRPLLLTQAVTPNGHPDLQTAVARRALEMGVQVAPDDVVVTHGC 198 Query: 219 IEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELAVR 278 IEA+NLALRAVA PGDT+AVESPTY+GLLQ LE LGM+A+EIPTSP TGIS+EALE+AV+ Sbjct: 199 IEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLGMRAVEIPTSPRTGISLEALEMAVQ 258 Query: 279 TYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTELADGNVPPSSL 338 YGNI+ VVVVPNLQNPLG IMPD K +L CE +PLIEDD Y+ LADG P ++ Sbjct: 259 AYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHGIPLIEDDTYSALADGPAPLKAI 318 Query: 339 KSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFI 398 K+ DRSGNVIYCASLNK +APG+RLGWM GGRW ERV+MLKF +R N+ W+QVTAA + Sbjct: 319 KAWDRSGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAARLL 378 Query: 399 ASPAYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNVPNGGVGLWVELPAQVCSQQLF 458 +S AYDRH+R LRQ L+EQRERMAE+IA FP GTRL+VP GGV +WVELPA V S LF Sbjct: 379 SSGAYDRHIRTLRQTLREQRERMAETIAGCFPAGTRLSVPAGGVAMWVELPAGVSSMALF 438 Query: 459 ERALLEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRELDQALRRLGSIGHSLA 511 E AL G+ ++PG +FSN NR+ H+ RIC G P+T E++ AL +LG + H+LA Sbjct: 439 EAALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTAEVETALAQLGRLAHALA 491