BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2124.p (499 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775165.1| GGDEF family protein [Herbaspirillum seroped... 909 0.0 ref|ZP_06842743.1| diguanylate cyclase [Burkholderia sp. Ch1-1] ... 655 0.0 ref|YP_553571.1| diguanylate cyclase [Burkholderia xenovorans LB... 654 0.0 ref|YP_001888672.1| diguanylate cyclase [Burkholderia phytofirma... 650 0.0 ref|YP_003607273.1| diguanylate cyclase [Burkholderia sp. CCGE10... 649 0.0 >ref|YP_003775165.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63257.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 502 Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats. Identities = 453/502 (90%), Positives = 470/502 (93%), Gaps = 4/502 (0%) Query: 1 MQNESSLARSVPASIP---ALSEQETFDLTPVSLWKEDYSGLKRLFDQWRADGVTDLRSY 57 MQN+ LA + PAS ALSEQETFDLTPVSLWKEDYSGLKRLFDQWRA GVTDLRSY Sbjct: 1 MQNDHPLASAGPASFSGKHALSEQETFDLTPVSLWKEDYSGLKRLFDQWRAAGVTDLRSY 60 Query: 58 LTVDPSRAQACAMQIRVVDVNRRTLEWYEARDLAHLVANLDKIFRDDMLDTFIDEMVQLW 117 L D +RA ACAMQIRVVDVNRRTLEWYEARDL HLVANLDK+FRDDML+TFIDEM QLW Sbjct: 61 LRQDHARAHACAMQIRVVDVNRRTLEWYEARDLEHLVANLDKVFRDDMLETFIDEMAQLW 120 Query: 118 NGGTTFSSYTVNYTLGGKRLDIQLSGRIMPGSEESWDYVLLAIENVTERETARKKLSRSE 177 G + FSSYTVNYTLGGKRLDIQLSGRIMPGSEESW+YVLLAIENVTERETARKKLSRSE Sbjct: 121 EGRSHFSSYTVNYTLGGKRLDIQLSGRIMPGSEESWEYVLLAIENVTERETARKKLSRSE 180 Query: 178 NYARGLFEYSPISLWVEDFSAVKRLFDDLHRIGITDFRTFTDVHPEFVERCMQEIRVIDV 237 NYARGLFEYSPISLWVEDFS VKRLF+DLHRIGITDFRTFTDVHPEFVERCMQEIRVIDV Sbjct: 181 NYARGLFEYSPISLWVEDFSQVKRLFNDLHRIGITDFRTFTDVHPEFVERCMQEIRVIDV 240 Query: 238 NLQTLSMFGAPDKATLLSRLSDVFRDDMRPHFNEQLIELWNGNLLHHREVVNYSLTGETL 297 NLQTLSMF APDKATLLSRLSDVFRDDMR HFNEQLIELWNGNLLH REVVNY+L GETL Sbjct: 241 NLQTLSMFCAPDKATLLSRLSDVFRDDMRQHFNEQLIELWNGNLLHQREVVNYALNGETL 300 Query: 298 HVHLQFSVFPGHEKNWDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNR 357 HVHLQFSVFPGHE++WDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNR Sbjct: 301 HVHLQFSVFPGHEEHWDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNR 360 Query: 358 LERKGPFPVSVIVADLNGLKDVNDELGHATGDALLRRVGEVLGKAVERPCSVARTGGDEF 417 LERKGPFPVSVIVADLNGLK VNDELGHA GDALLRRVGEVL KAVERPCSVARTGGDEF Sbjct: 361 LERKGPFPVSVIVADLNGLKQVNDELGHAAGDALLRRVGEVLDKAVERPCSVARTGGDEF 420 Query: 418 AILLPATDERGCQLLMDQIQKLVEVNNQYYSGVPLSLSMGAATGVPGERLEQVVQRADSL 477 AILLPATDERGC LLM+Q+QKL+EVNNQYYSGVPLSLSMGAAT +PGERLEQVVQRADSL Sbjct: 421 AILLPATDERGCVLLMEQVQKLLEVNNQYYSGVPLSLSMGAATALPGERLEQVVQRADSL 480 Query: 478 MYEAKRHYYASTPGLERRH-PD 498 MYEAKR YYA++P LERRH PD Sbjct: 481 MYEAKRQYYATSPTLERRHLPD 502 >ref|ZP_06842743.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gb|EFG69702.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 495 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 315/478 (65%), Positives = 373/478 (78%) Query: 16 PALSEQETFDLTPVSLWKEDYSGLKRLFDQWRADGVTDLRSYLTVDPSRAQACAMQIRVV 75 PA + E F+L PVSLW ED+SG++ LF+ WRA+GVTDLR++ +P CA IRV+ Sbjct: 11 PANDDSEMFELAPVSLWLEDFSGVRALFEAWRANGVTDLRAHFAANPDCVAQCAHSIRVI 70 Query: 76 DVNRRTLEWYEARDLAHLVANLDKIFRDDMLDTFIDEMVQLWNGGTTFSSYTVNYTLGGK 135 VN++TL +EA D L NL +FRDDML T ++E+ QLW G + F+S TVNYTLGG+ Sbjct: 71 KVNQKTLTQFEAADFEALNGNLASVFRDDMLKTHLEELCQLWAGQSQFTSQTVNYTLGGR 130 Query: 136 RLDIQLSGRIMPGSEESWDYVLLAIENVTERETARKKLSRSENYARGLFEYSPISLWVED 195 RLD+ L G ++PG E WD VL+++E++TE E AR +++ +E Y RGLFEYSP+SLWVED Sbjct: 131 RLDVLLKGAVLPGHEARWDRVLVSVEDITELEGARHRVTLAEQYVRGLFEYSPVSLWVED 190 Query: 196 FSAVKRLFDDLHRIGITDFRTFTDVHPEFVERCMQEIRVIDVNLQTLSMFGAPDKATLLS 255 FSAVKRL DD GI DFR FTDVHPEFVERCMQEI V+DVN TL MF A DK TLL+ Sbjct: 191 FSAVKRLLDDARAAGINDFRVFTDVHPEFVERCMQEIHVLDVNQHTLDMFAAKDKKTLLA 250 Query: 256 RLSDVFRDDMRPHFNEQLIELWNGNLLHHREVVNYSLTGETLHVHLQFSVFPGHEKNWDL 315 RL+DVFRDDMRPHF EQLI+LW+G L REV+NYSL G +HVHLQFSV PGHEKNWDL Sbjct: 251 RLTDVFRDDMRPHFREQLIDLWDGKLFQQREVLNYSLDGSEVHVHLQFSVLPGHEKNWDL 310 Query: 316 VLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNRLERKGPFPVSVIVADLNG 375 VLVALTDITARKKAEAYLEFLGKHD LTKL NR++ VDELNRLERKGP+PV++I+ADLNG Sbjct: 311 VLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVTIIMADLNG 370 Query: 376 LKDVNDELGHATGDALLRRVGEVLGKAVERPCSVARTGGDEFAILLPATDERGCQLLMDQ 435 LK VND+LGHA GDALLRR GEVL KA E P AR GGDEFAIL+P TDERG ++D Sbjct: 371 LKRVNDQLGHAAGDALLRRAGEVLAKATEAPFHAARIGGDEFAILMPDTDERGGVAMVDA 430 Query: 436 IQKLVEVNNQYYSGVPLSLSMGAATGVPGERLEQVVQRADSLMYEAKRHYYASTPGLE 493 I++L+E+NNQ+Y G PLS SMGAAT G+RLE VQRAD LMYE KR YAS P + Sbjct: 431 IRQLIELNNQFYPGSPLSFSMGAATCQRGDRLEAGVQRADLLMYEEKRATYASQPATD 488 >ref|YP_553571.1| diguanylate cyclase [Burkholderia xenovorans LB400] gb|ABE34221.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 495 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 315/475 (66%), Positives = 372/475 (78%) Query: 16 PALSEQETFDLTPVSLWKEDYSGLKRLFDQWRADGVTDLRSYLTVDPSRAQACAMQIRVV 75 PA + E F+L PVSLW ED+SG++ LF+ WRADGVTDLR++ +P CA IRV+ Sbjct: 11 PANDDSEMFELAPVSLWLEDFSGVRALFEAWRADGVTDLRAHFAANPDCVAQCAHSIRVI 70 Query: 76 DVNRRTLEWYEARDLAHLVANLDKIFRDDMLDTFIDEMVQLWNGGTTFSSYTVNYTLGGK 135 VN++TL +EA D L NL +FRDDML T ++E+ QLW G + F+S TVNYTLGG+ Sbjct: 71 KVNQKTLTQFEAADFEALNGNLASVFRDDMLKTHLEELCQLWAGQSQFTSQTVNYTLGGR 130 Query: 136 RLDIQLSGRIMPGSEESWDYVLLAIENVTERETARKKLSRSENYARGLFEYSPISLWVED 195 RLD+ L G ++PG E WD VL+++E++TE E AR +++ +E Y RGLFEYSP+SLWVED Sbjct: 131 RLDVLLKGAVLPGHEARWDRVLVSVEDITELEGARHRVTLAEQYVRGLFEYSPVSLWVED 190 Query: 196 FSAVKRLFDDLHRIGITDFRTFTDVHPEFVERCMQEIRVIDVNLQTLSMFGAPDKATLLS 255 FSAVKRL DD GI DFR FTDVHPEFVERCMQEI V+DVN TL MF A DK TLL+ Sbjct: 191 FSAVKRLLDDARAAGINDFRVFTDVHPEFVERCMQEIHVLDVNQHTLDMFAAKDKKTLLA 250 Query: 256 RLSDVFRDDMRPHFNEQLIELWNGNLLHHREVVNYSLTGETLHVHLQFSVFPGHEKNWDL 315 RL+DVFRDDMRPHF EQLI+LW+G L REV+NYSL G +HVHLQFSV PGHEKNWDL Sbjct: 251 RLTDVFRDDMRPHFREQLIDLWDGKLFQQREVLNYSLDGSEVHVHLQFSVLPGHEKNWDL 310 Query: 316 VLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNRLERKGPFPVSVIVADLNG 375 VLVALTDITARKKAEAYLEFLGKHD LTKL NR++ VDELNRLERKGP+PV++I+ADLNG Sbjct: 311 VLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVTIIMADLNG 370 Query: 376 LKDVNDELGHATGDALLRRVGEVLGKAVERPCSVARTGGDEFAILLPATDERGCQLLMDQ 435 LK VND+LGHA GDALLRR GEVL KA E P AR GGDEFAIL+P TDERG ++D Sbjct: 371 LKRVNDQLGHAAGDALLRRAGEVLAKATETPFHAARIGGDEFAILMPDTDERGGIAMVDA 430 Query: 436 IQKLVEVNNQYYSGVPLSLSMGAATGVPGERLEQVVQRADSLMYEAKRHYYASTP 490 I++L+E+NNQ+Y G PLS SMGAAT G+RLE VQRAD LMYE KR YA+ P Sbjct: 431 IRQLIELNNQFYPGSPLSFSMGAATCQRGDRLEAGVQRADLLMYEEKRATYANQP 485 >ref|YP_001888672.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gb|ACD19302.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 492 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 315/476 (66%), Positives = 371/476 (77%) Query: 16 PALSEQETFDLTPVSLWKEDYSGLKRLFDQWRADGVTDLRSYLTVDPSRAQACAMQIRVV 75 PA + E F+L PVSLW ED+SG++ LFD WRADGVTDLR++ +P CA IRV+ Sbjct: 11 PANDDSEMFELAPVSLWLEDFSGVRSLFDAWRADGVTDLRAHFAANPDCVAQCAHSIRVI 70 Query: 76 DVNRRTLEWYEARDLAHLVANLDKIFRDDMLDTFIDEMVQLWNGGTTFSSYTVNYTLGGK 135 VN++TL +EA D L +NL +FRDDML T ++E+ QLW G + F+S TVNYTLGG+ Sbjct: 71 KVNQKTLTQFEAADFDALTSNLASVFRDDMLKTHLEELCQLWAGQSQFTSQTVNYTLGGR 130 Query: 136 RLDIQLSGRIMPGSEESWDYVLLAIENVTERETARKKLSRSENYARGLFEYSPISLWVED 195 RLD+ L G ++PG E WD VL+++E++TE E AR +++ +E Y RGLFEYSP+SLWVED Sbjct: 131 RLDVLLKGAVLPGHEARWDRVLVSVEDITELEGARHRVTLAEQYVRGLFEYSPVSLWVED 190 Query: 196 FSAVKRLFDDLHRIGITDFRTFTDVHPEFVERCMQEIRVIDVNLQTLSMFGAPDKATLLS 255 FSAVKRL D+ GI DFR FTDVHPEFVERCMQEI V+DVN TL MF A DK TLLS Sbjct: 191 FSAVKRLLDEARAAGINDFRVFTDVHPEFVERCMQEIHVLDVNQHTLDMFAAKDKKTLLS 250 Query: 256 RLSDVFRDDMRPHFNEQLIELWNGNLLHHREVVNYSLTGETLHVHLQFSVFPGHEKNWDL 315 RL+DVFRDDMRPHF EQL++LW+G L REV+NYSL G +HVHLQFSV PGHEK WDL Sbjct: 251 RLTDVFRDDMRPHFREQLVDLWDGKLFQQREVLNYSLDGNEVHVHLQFSVLPGHEKTWDL 310 Query: 316 VLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNRLERKGPFPVSVIVADLNG 375 VLVALTDITARKKAEAYLEFLGKHD LTKL NR++ VDELNRLERKGP+PV++I+ADLNG Sbjct: 311 VLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVTIIMADLNG 370 Query: 376 LKDVNDELGHATGDALLRRVGEVLGKAVERPCSVARTGGDEFAILLPATDERGCQLLMDQ 435 LK VND+LGHA GDALLRR GEVL KA E P AR GGDEFAIL+P TDERG ++D Sbjct: 371 LKRVNDQLGHAAGDALLRRAGEVLAKATETPFHAARIGGDEFAILMPDTDERGGAAMVDA 430 Query: 436 IQKLVEVNNQYYSGVPLSLSMGAATGVPGERLEQVVQRADSLMYEAKRHYYASTPG 491 I++LVE+NNQ+Y G LS SMGAAT G+RLE VQRAD LMYE KR YAS P Sbjct: 431 IRQLVELNNQFYPGSLLSFSMGAATCQRGDRLEAGVQRADLLMYEEKRATYASQPA 486 >ref|YP_003607273.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gb|ADG17762.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 492 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 312/478 (65%), Positives = 377/478 (78%) Query: 16 PALSEQETFDLTPVSLWKEDYSGLKRLFDQWRADGVTDLRSYLTVDPSRAQACAMQIRVV 75 P + F+L PVSLW ED+SG++ LFD+WRA GVTDLR++ DP R CA +IRV+ Sbjct: 11 PINDDSGMFELAPVSLWLEDFSGVRALFDEWRAAGVTDLRAHFAEDPRRVAECAHRIRVI 70 Query: 76 DVNRRTLEWYEARDLAHLVANLDKIFRDDMLDTFIDEMVQLWNGGTTFSSYTVNYTLGGK 135 VNR+TL +EA D L +NL +FRDDML T ++E+ QLW G + F+S+TVNYTLGG+ Sbjct: 71 KVNRQTLTQFEAADFDTLTSNLASVFRDDMLKTHLEELCQLWAGQSNFTSHTVNYTLGGR 130 Query: 136 RLDIQLSGRIMPGSEESWDYVLLAIENVTERETARKKLSRSENYARGLFEYSPISLWVED 195 RLD+ L G ++PG E+ WD VL++ E++TE E AR+++ ++E YARGLFE+SP+SLWVED Sbjct: 131 RLDVLLKGSVLPGHEQRWDRVLVSTEDITELEGARRRVVKAEEYARGLFEHSPVSLWVED 190 Query: 196 FSAVKRLFDDLHRIGITDFRTFTDVHPEFVERCMQEIRVIDVNLQTLSMFGAPDKATLLS 255 FSAVKRL D GI DFR FTDVHPEFVERCM EI V+DVN TL MFGA DK TLL+ Sbjct: 191 FSAVKRLLDGARAAGINDFRVFTDVHPEFVERCMAEIHVLDVNHHTLGMFGAKDKKTLLA 250 Query: 256 RLSDVFRDDMRPHFNEQLIELWNGNLLHHREVVNYSLTGETLHVHLQFSVFPGHEKNWDL 315 RL+DVFRDDMRPHF EQLI+LW+ L REV+NYSL G +HVHLQFSV PGHE++WDL Sbjct: 251 RLADVFRDDMRPHFREQLIDLWDNKLFQQREVLNYSLDGNEVHVHLQFSVLPGHERDWDL 310 Query: 316 VLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNRLERKGPFPVSVIVADLNG 375 VLVALTDITARKKAEAYLEFLGKHD LTKL NR++ VDELNRLERKGP+PV++I+ADLNG Sbjct: 311 VLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVTIIMADLNG 370 Query: 376 LKDVNDELGHATGDALLRRVGEVLGKAVERPCSVARTGGDEFAILLPATDERGCQLLMDQ 435 LK VND+LGHA GDALLRR GEVL KA+E P AR GGDEFAIL+P TDERG ++D Sbjct: 371 LKRVNDQLGHAAGDALLRRAGEVLAKAMESPFHAARIGGDEFAILMPDTDERGGAAMIDA 430 Query: 436 IQKLVEVNNQYYSGVPLSLSMGAATGVPGERLEQVVQRADSLMYEAKRHYYASTPGLE 493 I++LVE+NNQ+Y G PLS SMGAAT G+RLE VQRAD LMYE KR +Y + P ++ Sbjct: 431 IRQLVEMNNQFYPGSPLSFSMGAATCQRGDRLEAGVQRADLLMYEEKRAHYDAQPAVD 488