BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2122.p         (168 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775163.1| hypothetical protein Hsero_1742 [Herbaspiril...   188   3e-46
ref|YP_003374790.1| hypothetical protein XALc_0259 [Xanthomonas ...   104   3e-21

>ref|YP_003775163.1| hypothetical protein Hsero_1742 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63255.1| hypothetical protein Hsero_1742 [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 148/168 (88%), Positives = 156/168 (92%)

Query: 1   MDGMNMAIDTSSIPLGNLDPYGLPGNSASAGNSAVKAVNDPAAVAQAVELAAQASVVVSL 60
           MDGMNMAIDTSSIPLGNLDPYGLPGNSASAGNSAVKAVNDPAAVAQAVELAAQASVVVSL
Sbjct: 1   MDGMNMAIDTSSIPLGNLDPYGLPGNSASAGNSAVKAVNDPAAVAQAVELAAQASVVVSL 60

Query: 61  GGASSGNGALTYNAAGLFDAIVGAGSSAGTSTDLTQNQATQSYYQGVLGSIVTPGATSGI 120
           GGASSGNGALTYNAAGLFDAIVGAGS+ G S DLTQNQATQSYYQG+LGSIV P +  G+
Sbjct: 61  GGASSGNGALTYNAAGLFDAIVGAGSADGASPDLTQNQATQSYYQGILGSIVIPSSNDGV 120

Query: 121 YDGSGVFAGEGLSSQLSLLLKSQPDLTGSIVEDIVNQNVVGGLISTMA 168
           YDGSG F+G+ LSSQLSLLLKS PDLTG+IVEDIVNQ +VGGLIST A
Sbjct: 121 YDGSGQFSGQALSSQLSLLLKSNPDLTGAIVEDIVNQGIVGGLISTTA 168


>ref|YP_003374790.1| hypothetical protein XALc_0259 [Xanthomonas albilineans GPE PC73]
 emb|CBA14803.1| hypothetical protein XALc_0259 [Xanthomonas albilineans]
          Length = 164

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/164 (50%), Positives = 107/164 (65%), Gaps = 1/164 (0%)

Query: 6   MAIDTSSIPLGNLDPYGLPGNSASAGNSAVKAVNDPAAVAQAVELAAQASVVVSLGGASS 65
           MA   +S+P     P      + +   + V+A ND AAV QAV L++ ASV++SLG +S 
Sbjct: 1   MASIDTSLPSVGSAPNPFATATTNPFGNTVQASNDTAAVQQAVSLSSDASVILSLGTSSP 60

Query: 66  GNGALTYNAAGLFDAIVGAGSSAGTSTDLTQNQATQSYYQGVLGSIVTPGATSGIYDGSG 125
               LTY AAGLF+ IV AGS+ GTS DL QNQA QSY QG+L  I  P +T GIY+ SG
Sbjct: 61  AEQGLTYTAAGLFNTIVSAGSADGTSPDLNQNQANQSYSQGILDGIGNPPSTPGIYNASG 120

Query: 126 VFAGEG-LSSQLSLLLKSQPDLTGSIVEDIVNQNVVGGLISTMA 168
           VF G+  L+  LS  LK  P+LTG++V D++NQ +VGGLIST A
Sbjct: 121 VFTGQNTLTPALSSALKENPNLTGTVVGDLLNQGIVGGLISTTA 164