BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2120.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775161.1| phosphatidylserine decarboxylase proenzyme p...   243   5e-63
ref|YP_004751922.1| phosphatidylserine decarboxylase [Collimonas...   221   3e-56
ref|ZP_04578101.1| phosphatidylserine decarboxylase subunit proe...   214   5e-54
ref|ZP_04575906.1| phosphatidylserine decarboxylase subunit proe...   209   9e-53
ref|YP_003525014.1| phosphatidylserine decarboxylase related pro...   209   2e-52

>ref|YP_003775161.1| phosphatidylserine decarboxylase proenzyme protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63253.1| phosphatidylserine decarboxylase proenzyme protein [Herbaspirillum
           seropedicae SmR1]
          Length = 214

 Score =  243 bits (621), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNVFNVHSNRAPVDGKIEKVQYFPGKFVNADLDKASLENERNALAITTTSGHSVTCVQVA 60
           MNVFNVHSNRAPVDGKIEKVQYFPGKFVNADLDKASLENERNALAITTTSGHSVTCVQVA
Sbjct: 95  MNVFNVHSNRAPVDGKIEKVQYFPGKFVNADLDKASLENERNALAITTTSGHSVTCVQVA 154

Query: 61  GLIARRILCYVKAGDTLARGQRYGFIRFGSRVDVYLPLTATPKVTVGEKVSATETILAEL 120
           GLIARRILCYVKAGDTLARGQRYGFIRFGSRVDVYLPLTATPKVTVGEKVSATETILAEL
Sbjct: 155 GLIARRILCYVKAGDTLARGQRYGFIRFGSRVDVYLPLTATPKVTVGEKVSATETILAEL 214


>ref|YP_004751922.1| phosphatidylserine decarboxylase [Collimonas fungivorans Ter331]
 gb|AEK61099.1| Phosphatidylserine decarboxylase [Collimonas fungivorans Ter331]
          Length = 214

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/120 (88%), Positives = 111/120 (92%)

Query: 1   MNVFNVHSNRAPVDGKIEKVQYFPGKFVNADLDKASLENERNALAITTTSGHSVTCVQVA 60
           MNVFNVHSNRAPVDGKIEKV+YFPGKFVNADLDKAS+ENERNAL IT  +G +VTCVQVA
Sbjct: 95  MNVFNVHSNRAPVDGKIEKVEYFPGKFVNADLDKASIENERNALVITAANGQTVTCVQVA 154

Query: 61  GLIARRILCYVKAGDTLARGQRYGFIRFGSRVDVYLPLTATPKVTVGEKVSATETILAEL 120
           GLIARRILCYVK  D LARGQRYGFIRFGSRVDVYLPLTATPKV VG+KVSATETILAE 
Sbjct: 155 GLIARRILCYVKVADVLARGQRYGFIRFGSRVDVYLPLTATPKVAVGDKVSATETILAEF 214


>ref|ZP_04578101.1| phosphatidylserine decarboxylase subunit proenzyme [Oxalobacter
           formigenes OXCC13]
 gb|EEO29074.1| phosphatidylserine decarboxylase subunit proenzyme [Oxalobacter
           formigenes OXCC13]
          Length = 217

 Score =  214 bits (544), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 101/120 (84%), Positives = 109/120 (90%)

Query: 1   MNVFNVHSNRAPVDGKIEKVQYFPGKFVNADLDKASLENERNALAITTTSGHSVTCVQVA 60
           MNVFNVHSN +PVDGKIEKVQYFPGKFVNADLDKAS+ENERNAL I+ ++G  VTCVQVA
Sbjct: 93  MNVFNVHSNWSPVDGKIEKVQYFPGKFVNADLDKASIENERNALVISASNGQMVTCVQVA 152

Query: 61  GLIARRILCYVKAGDTLARGQRYGFIRFGSRVDVYLPLTATPKVTVGEKVSATETILAEL 120
           GLIARRILCYV  GD L +GQR+GFIRFGSRVDVYLPL+A PKVTVGEKV ATETILAEL
Sbjct: 153 GLIARRILCYVGKGDELTKGQRFGFIRFGSRVDVYLPLSAVPKVTVGEKVYATETILAEL 212


>ref|ZP_04575906.1| phosphatidylserine decarboxylase subunit proenzyme [Oxalobacter
           formigenes HOxBLS]
 gb|EEO26868.1| phosphatidylserine decarboxylase subunit proenzyme [Oxalobacter
           formigenes HOxBLS]
          Length = 212

 Score =  209 bits (533), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 98/120 (81%), Positives = 109/120 (90%)

Query: 1   MNVFNVHSNRAPVDGKIEKVQYFPGKFVNADLDKASLENERNALAITTTSGHSVTCVQVA 60
           MNVFNVHSNR+PVDGK++ V YFPGKFVNADLDKASLENERNAL IT  +G  VTCVQVA
Sbjct: 93  MNVFNVHSNRSPVDGKVQSVHYFPGKFVNADLDKASLENERNALIITAENGQMVTCVQVA 152

Query: 61  GLIARRILCYVKAGDTLARGQRYGFIRFGSRVDVYLPLTATPKVTVGEKVSATETILAEL 120
           GLIARRILCYVK+G+ L RG+R+GFIRFGSRVDVYLPL+A PKVTVG+KV ATET+LAEL
Sbjct: 153 GLIARRILCYVKSGEALRRGERFGFIRFGSRVDVYLPLSAKPKVTVGDKVYATETVLAEL 212


>ref|YP_003525014.1| phosphatidylserine decarboxylase related protein [Sideroxydans
           lithotrophicus ES-1]
 gb|ADE12627.1| phosphatidylserine decarboxylase related protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 212

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/120 (82%), Positives = 111/120 (92%)

Query: 1   MNVFNVHSNRAPVDGKIEKVQYFPGKFVNADLDKASLENERNALAITTTSGHSVTCVQVA 60
           MNVFNVHSNR+PVDGK+EK++YFPGKFVNADLDKAS ENERNA+ +TTT G +VT VQVA
Sbjct: 93  MNVFNVHSNRSPVDGKVEKIEYFPGKFVNADLDKASTENERNAVVLTTTDGQTVTFVQVA 152

Query: 61  GLIARRILCYVKAGDTLARGQRYGFIRFGSRVDVYLPLTATPKVTVGEKVSATETILAEL 120
           GLIARRILCY+KAGD L+RGQRYGFIRFGSRVDVYLPLTAT KV +G+KVSAT TILA+L
Sbjct: 153 GLIARRILCYIKAGDVLSRGQRYGFIRFGSRVDVYLPLTATVKVAIGDKVSATTTILAKL 212