BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2119.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775160.1| hypothetical protein Hsero_1739 [Herbaspiril...   334   3e-90

>ref|YP_003775160.1| hypothetical protein Hsero_1739 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63252.1| hypothetical protein Hsero_1739 [Herbaspirillum seropedicae SmR1]
          Length = 176

 Score =  334 bits (857), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 163/176 (92%), Positives = 169/176 (96%)

Query: 1   MRTITKLLLPLFTALVASTAHADICADLRAIHQQSQSHFDGWKKDGPDAVMKGDKRGPVY 60
           MRT TKLLLPLFTALVASTAHADICADLRAIHQQSQS FDGWKKDGPD+VMK DKRGP+Y
Sbjct: 1   MRTFTKLLLPLFTALVASTAHADICADLRAIHQQSQSRFDGWKKDGPDSVMKDDKRGPIY 60

Query: 61  LSNFMLDGAESCAIADNSSVYTCIWRYSTPADMGRAYQRLVNDVKACAPLAKEPPGIIAD 120
           LSNFMLDGAESCAIADNSSVYTCIWRY TP DMGRAYQRLV+DVK+CAPLAKEPPGIIAD
Sbjct: 61  LSNFMLDGAESCAIADNSSVYTCIWRYPTPTDMGRAYQRLVSDVKSCAPLAKEPPGIIAD 120

Query: 121 EPQERRQGDLRQITEVTGLDYADAEVTILIGQMQLTGPNGLARNELKLSFSRPQPR 176
           EPQERRQGDLRQITEVTGLDYADAEVT+LIGQMQLTGP GLARNELKLSFSR +PR
Sbjct: 121 EPQERRQGDLRQITEVTGLDYADAEVTVLIGQMQLTGPRGLARNELKLSFSRQRPR 176