BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2113.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775155.1| RNA polymerase sigma-70 factor, ECF subfamil... 310 9e-83 ref|YP_004751915.1| DNA-directed RNA polymerase specialized sigm... 292 2e-77 ref|ZP_08276308.1| DNA-directed RNA polymerase specialized sigma... 288 2e-76 ref|YP_001858248.1| RNA polymerase factor sigma-70 [Burkholderia... 271 4e-71 ref|YP_295169.1| RNA polymerase factor sigma-70 [Ralstonia eutro... 270 8e-71 >ref|YP_003775155.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63247.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 310 bits (793), Expect = 9e-83, Method: Composition-based stats. Identities = 189/192 (98%), Positives = 192/192 (100%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ Sbjct: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGDDFDLLESLESEDGSQAAESSAD 120 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGG+DFDLLESLESEDGS+AAESSAD Sbjct: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 Query: 121 KVEREQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER+QTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA Sbjct: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 Query: 181 LAQALRAKGISL 192 LAQALRAKGISL Sbjct: 181 LAQALRAKGISL 192 >ref|YP_004751915.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Collimonas fungivorans Ter331] gb|AEK61092.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Collimonas fungivorans Ter331] Length = 189 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 158/192 (82%), Positives = 174/192 (90%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLE+VERRAFKQAVYAVRKDE+ALDIVQDAMIKLAEKYGDKP ELPMLFQ Sbjct: 1 MATDKELSDFLENVERRAFKQAVYAVRKDESALDIVQDAMIKLAEKYGDKPAAELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGDDFDLLESLESEDGSQAAESSAD 120 RILQNTIHD+FRREKVRNTWVSLFSS G N + E D+D+LE+ ES++ SQA ESSA+ Sbjct: 61 RILQNTIHDYFRREKVRNTWVSLFSSMGRNNANDE---DYDVLETFESDEDSQATESSAN 117 Query: 121 KVEREQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+EREQ LN+ID E+QKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 118 KLEREQILNIIDEEVQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 177 Query: 181 LAQALRAKGISL 192 LA +L+AKGISL Sbjct: 178 LALSLKAKGISL 189 >ref|ZP_08276308.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF30220.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Oxalobacteraceae bacterium IMCC9480] Length = 189 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 150/192 (78%), Positives = 174/192 (90%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLE+VERRAFKQA+YAVRK+E+ALDIVQDAMIKL++ YGDKP ELP+LFQ Sbjct: 1 MATDKELSDFLENVERRAFKQAIYAVRKEESALDIVQDAMIKLSQSYGDKPPAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGDDFDLLESLESEDGSQAAESSAD 120 RILQNTIHD+FRREKVRNTWV+LFSS GN G+ GD+F+LL+ ++D +QA+ES AD Sbjct: 61 RILQNTIHDYFRREKVRNTWVTLFSSMTGN---GDAGDEFELLDHYNADDNAQASESGAD 117 Query: 121 KVEREQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K++REQTL+ ID E+QKLP RQREAFLMRYWQD+DVAETAAAMGCSEGSVKTHCSRATH Sbjct: 118 KLQREQTLSAIDHEVQKLPARQREAFLMRYWQDLDVAETAAAMGCSEGSVKTHCSRATHT 177 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 178 LAQALKAKGITL 189 >ref|YP_001858248.1| RNA polymerase factor sigma-70 [Burkholderia phymatum STM815] gb|ACC71202.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phymatum STM815] Length = 187 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 148/192 (77%), Positives = 165/192 (85%), Gaps = 5/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+A+LDIVQDAMIKLAEKYGD+P ELP+LFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGDDFDLLESLESEDGSQAAESSAD 120 RILQN +HD+FRR+KVRNTWVSLFSS G N D +DFD LE+ ES+DGS ESS Sbjct: 61 RILQNAMHDYFRRQKVRNTWVSLFSSLG-NADD----EDFDPLETFESQDGSTGVESSEQ 115 Query: 121 KVEREQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 ++EREQ L LID EIQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 116 QLEREQVLQLIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 175 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 176 LAQALKAKGITL 187 >ref|YP_295169.1| RNA polymerase factor sigma-70 [Ralstonia eutropha JMP134] gb|AAZ60325.1| Sigma-70 region 2:Sigma-70 region 4 [Ralstonia eutropha JMP134] Length = 188 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 150/192 (78%), Positives = 167/192 (86%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATD+ELSDFL SVERRAFKQAV+AVR DEAALDIVQDAMIKLAEKYGDK ELP LFQ Sbjct: 1 MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGDDFDLLESLESEDGSQAAESSAD 120 RILQNTIHD+FRR+KVRNTW+SLFSS D GDD DLL++LE+E G++ AESSAD Sbjct: 61 RILQNTIHDWFRRQKVRNTWISLFSSLR----DERDGDDNDLLDTLEAEAGTEMAESSAD 116 Query: 121 KVEREQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q + +I+ EIQ+LPTRQREAFLMRYW+DMDVAETAA MGCSEGSVKTHCSRATH Sbjct: 117 KVERAQVMAIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHT 176 Query: 181 LAQALRAKGISL 192 LAQALRA+G+ L Sbjct: 177 LAQALRARGVRL 188