BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2112.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775154.1| hypothetical protein Hsero_1733 [Herbaspiril...   195   2e-48
ref|ZP_04577934.1| conserved hypothetical protein [Oxalobacter f...   111   3e-23
ref|ZP_08276309.1| putative transmembrane protein [Oxalobacterac...   105   3e-21
ref|ZP_04578024.1| conserved hypothetical protein [Oxalobacter f...   105   3e-21
ref|YP_004751914.1| hypothetical protein CFU_1259 [Collimonas fu...   103   8e-21

>ref|YP_003775154.1| hypothetical protein Hsero_1733 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63246.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/137 (86%), Positives = 124/137 (90%), Gaps = 3/137 (2%)

Query: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLSAARRVALARKKQAPIHKRVEQPALAGAF 60
           MNNKEMQFAYKVKLALDANLDNLSDDTLQSL+AARRVALARKKQ P+  RVEQP LAGAF
Sbjct: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLAAARRVALARKKQTPMTVRVEQPVLAGAF 60

Query: 61  G--GTMMSPEKPSWWSRLGVAAPLLVGIILFAGIYQHENAKRVSYLADIDAAVLSDELPL 118
           G  G M+SP K SW  RLGVAAPLL GIILFAG+YQHENAKRVSYLADIDAAVLSDELPL
Sbjct: 61  GSAGGMLSP-KASWLGRLGVAAPLLAGIILFAGLYQHENAKRVSYLADIDAAVLSDELPL 119

Query: 119 SAYLDHGFNAFLAEKGQ 135
           SAYLDHGFNA+LAEK Q
Sbjct: 120 SAYLDHGFNAYLAEKEQ 136


>ref|ZP_04577934.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gb|EEO28896.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 136

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/134 (44%), Positives = 87/134 (64%), Gaps = 4/134 (2%)

Query: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLSAARRVALARKKQ-APIHKRVEQPALAGA 59
           MN KE  FAYKV+ AL+  L+++ +   Q L  AR VA++RKK+ AP++++V Q   AG 
Sbjct: 1   MNMKEENFAYKVRHALNEKLEDMPEHITQRLERARLVAVSRKKKTAPLYRKVFQQVFAGT 60

Query: 60  FGGTMMSPEKPSWWSRLGVAAPLLVGIILFAGIYQHENAKRVSYLADIDAAVLSDELPLS 119
            G      +  SW  +LG+  P+LV ++  AGI+ HE  +++  +ADID AVLSDELP S
Sbjct: 61  SG---YFSDNTSWMGKLGLGFPILVLVVGMAGIFHHEQQRQIREIADIDIAVLSDELPPS 117

Query: 120 AYLDHGFNAFLAEK 133
           AY D GF A++ ++
Sbjct: 118 AYADSGFKAYVIDR 131


>ref|ZP_08276309.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30221.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 134

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/134 (50%), Positives = 91/134 (67%), Gaps = 3/134 (2%)

Query: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLSAARRVALARKKQ-APIHKRVEQPALAGA 59
           MN +E+ FAYKV+ AL+ NLDNL   T   L+AAR+ ALA K+Q +P+     Q  +AG 
Sbjct: 1   MNTRELNFAYKVRHALNENLDNLPVATTDRLAAARKKALAVKRQDSPLKALAAQHVMAGP 60

Query: 60  FGGTMMSPEKPSWWSRLGVAAPLLVGIILFAGIYQHENAKRVSYLADIDAAVLSDELPLS 119
             G   +    SW++R+G+  PLL  +   +G+YQ E  +R+S  ADIDAAVLSDELPLS
Sbjct: 61  AAGFFGNTS--SWFNRVGLIIPLLALVAGLSGMYQFEKQQRISDTADIDAAVLSDELPLS 118

Query: 120 AYLDHGFNAFLAEK 133
           AYLDHGF+A+LA +
Sbjct: 119 AYLDHGFSAYLARQ 132


>ref|ZP_04578024.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gb|EEO28997.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 134

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 4/134 (2%)

Query: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLSAARRVALARKKQA-PIHKRVEQPALAGA 59
           MN  E  FAYKV+ AL+  L++L ++    L+ AR +A+ RKK++ P++  + Q   AGA
Sbjct: 1   MNMNEQDFAYKVRHALNERLEDLPENISARLADARSMAVKRKKKSRPLYVSLFQQMFAGA 60

Query: 60  FGGTMMSPEKPSWWSRLGVAAPLLVGIILFAGIYQHENAKRVSYLADIDAAVLSDELPLS 119
             GT       SW  RLG++ P+LV ++  AGI+ HE  +++  +ADID AVLSDELP S
Sbjct: 61  SAGT---SGHVSWTGRLGLSLPILVLVVGMAGIFHHEQQRQIREIADIDIAVLSDELPPS 117

Query: 120 AYLDHGFNAFLAEK 133
           AY D+GF A++ ++
Sbjct: 118 AYADNGFRAYIVDR 131


>ref|YP_004751914.1| hypothetical protein CFU_1259 [Collimonas fungivorans Ter331]
 gb|AEK61091.1| hypothetical protein CFU_1259 [Collimonas fungivorans Ter331]
          Length = 137

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 70/132 (53%), Positives = 95/132 (71%), Gaps = 3/132 (2%)

Query: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLSAARRVALARKKQA-PIHKRVEQPALAGA 59
           MN+K++ FA+KV+ AL+ NLD+L   T   L+AAR+ A+ARKK+  P      Q  LAG 
Sbjct: 1   MNHKQINFAFKVRHALNENLDHLPAPTADRLAAARKAAMARKKKDAPTRALARQGVLAGD 60

Query: 60  FGGTMMSPEKPSWWSRLGVAAPLLVGIILFAGIYQHENAKRVSYLADIDAAVLSDELPLS 119
            G      ++ SW +RLGVAAP+LVG++L +G+YQ+E   R++  ADIDAAVLSDELP S
Sbjct: 61  AGSFF--GDRLSWLTRLGVAAPILVGMLLLSGLYQYEQQHRINDTADIDAAVLSDELPPS 118

Query: 120 AYLDHGFNAFLA 131
           AYLD+GF+A+LA
Sbjct: 119 AYLDNGFSAYLA 130