BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2111.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775153.1| transmembrane protein [Herbaspirillum serope... 234 1e-59 ref|YP_001353843.1| hypothetical protein mma_2153 [Janthinobacte... 106 4e-21 ref|YP_001099537.1| hypothetical protein HEAR1234 [Herminiimonas... 97 3e-18 ref|YP_001765574.1| hypothetical protein Bcenmc03_2291 [Burkhold... 93 5e-17 ref|YP_583063.1| hypothetical protein Rmet_0908 [Cupriavidus met... 92 1e-16 >ref|YP_003775153.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63245.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 200/261 (76%), Positives = 214/261 (81%), Gaps = 4/261 (1%) Query: 15 MHKTTGTPLKASVRLSRIALALAVLAGGLSCAWTVAQNAPSTAAAPSATPATPAPAASPA 74 M KTTGT +KA RLSRIALALAVLAGGLSCAWTVAQNAP+ AAP+A ATPA A +PA Sbjct: 1 MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAATPAAAPAPA 60 Query: 75 ATAPVAGTPGTAAAPAAPAATHASKSAG-RSIARKPENKLAWANLSPAQHQALEPLTGEW 133 + TP P A A H +G +S ARK +N+LAW NLS AQ QALEPLT EW Sbjct: 61 PAPATSATPAAPVTPPAAATAHPPAKSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW 120 Query: 134 PRMSELQKEKWLEIGKRYTKMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 193 PRMSELQKEKWLEIGKRY +MKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE Sbjct: 121 PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 180 Query: 194 EKHEQWTKYQQLSEEQKKKLAESKLPKRVAKLPTSPSAAAPTIQLPTEALDRSLPVTPAQ 253 EKHEQW KYQQLSEEQKKKL+E+KLPKRVAKLPTSPSAAAPTIQLP EALDR LPV PA Sbjct: 181 EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPA- 239 Query: 254 VPAPAVAP-APSQVPGSQATP 273 P PA+AP AP+ VPGSQA P Sbjct: 240 -PTPAIAPVAPALVPGSQAAP 259 >ref|YP_001353843.1| hypothetical protein mma_2153 [Janthinobacterium sp. Marseille] gb|ABR90848.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 236 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 91/216 (42%), Positives = 120/216 (55%), Gaps = 26/216 (12%) Query: 42 GLSCAWTVAQNAPSTAAAPSATPATPAPAASPAATAPVAGTPGTAAAPAAPAATHASKSA 101 LS A+T A A ++A A ATPA A +P P A A SK+ Sbjct: 22 ALSLAYTGATQAVPSSAPTFAPSATPATATNP--------------KPIAKAIPPTSKTT 67 Query: 102 GRSIARKPENKLAWANLSPAQHQALEPLTGEWPRMSELQKEKWLEIGKRYTKMKPEEQQR 161 NK W L+PAQ QAL PL +W ++ +KEKWLE+ R+T M P EQ+R Sbjct: 68 ---------NKSEWNKLTPAQKQALAPLAADWGKLDSFRKEKWLELANRFTSMTPPEQER 118 Query: 162 LHERMRDWVKLTPAERSAARTNYARAKKLDAEEKHEQWTKYQQLSEEQKKKLAESKLPKR 221 + ERMRDWVKLTP +R AR NY RAKKL+AE+K +QW +YQQLS+E+KK+LAE+ P++ Sbjct: 119 MQERMRDWVKLTPDQRRLARENYNRAKKLNAEQKAKQWEEYQQLSDEKKKQLAETATPQK 178 Query: 222 VAKLPTSPSAAAPTIQLPTEALDRSLPVTPAQVPAP 257 P S Q + ++ TPA+ P P Sbjct: 179 RIVNPPRLSNGQTNGQTQAKV---AVKPTPAKQPVP 211 >ref|YP_001099537.1| hypothetical protein HEAR1234 [Herminiimonas arsenicoxydans] emb|CAL61410.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 231 Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 100/156 (64%), Gaps = 3/156 (1%) Query: 112 KLAWANLSPAQHQALEPLTGEWPRMSELQKEKWLEIGKRYTKMKPEEQQRLHERMRDWVK 171 K W LSPAQ +AL PL G+W R+ +KEKWLE+ R+ M PEEQ R+ ERMRDWVK Sbjct: 74 KSEWNKLSPAQQRALAPLAGDWSRLDSFRKEKWLELANRFASMPPEEQARMQERMRDWVK 133 Query: 172 LTPAERSAARTNYARAKKLDAEEKHEQWTKYQQLSEEQKKKLAESKLPKR-VAKLPTSPS 230 L+P +R AR +Y+R KKL+A++K QW +YQQLSEE+KK+LA + PK+ +A P + Sbjct: 134 LSPEQRRLARESYSRTKKLNAQQKSRQWEEYQQLSEEKKKQLAATAKPKKPLANPPRQYA 193 Query: 231 AAAPTIQLPTEALDRSLPVTPA--QVPAPAVAPAPS 264 P I+ P + + P P + ++ PAPS Sbjct: 194 GKDPVIKQPPKLGTPASPPQPTAEATQSSSIHPAPS 229 >ref|YP_001765574.1| hypothetical protein Bcenmc03_2291 [Burkholderia cenocepacia MC0-3] gb|ACA91452.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3] Length = 255 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 93/176 (52%) Query: 57 AAAPSATPATPAPAASPAATAPVAGTPGTAAAPAAPAATHASKSAGRSIARKPENKLAWA 116 A A S P +PA T + A+ AA T L+WA Sbjct: 16 AIAVSYVATYPRFHPAPATTPVATTSSAAPASAAAGLTTELPPLPLPLPLPAAAGPLSWA 75 Query: 117 NLSPAQHQALEPLTGEWPRMSELQKEKWLEIGKRYTKMKPEEQQRLHERMRDWVKLTPAE 176 L+PAQH AL P +W S+ +K KWL+I R+ K+ P++Q+RL ERM +W K+TP + Sbjct: 76 RLTPAQHAALAPFADQWDGFSDARKRKWLKIASRFAKLSPDDQKRLQERMTEWAKMTPEQ 135 Query: 177 RSAARTNYARAKKLDAEEKHEQWTKYQQLSEEQKKKLAESKLPKRVAKLPTSPSAA 232 R AR NY AK+L A+ + W YQQL EEQK++LA ++ ++ + + P+ A Sbjct: 136 RRVARENYQSAKELSAQARERAWKAYQQLPEEQKERLAAAERRRKPSVVSAPPTVA 191 >ref|YP_583063.1| hypothetical protein Rmet_0908 [Cupriavidus metallidurans CH34] gb|ABF07794.1| conserved hypothetical protein; putative exported protein [Cupriavidus metallidurans CH34] Length = 268 Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 63/121 (52%), Positives = 76/121 (62%), Gaps = 1/121 (0%) Query: 115 WANLSPAQHQALEPLTGEWPRMSELQKEKWLEIGKRYTKMKPEEQQRLHERMRDWVKLTP 174 W LSPA QAL PL W + EL + KW I +RY K+KPEEQ+RL ERM +WVKLTP Sbjct: 64 WLELSPAHQQALAPLQPIWETLPELNRHKWERIAERYPKLKPEEQKRLQERMTEWVKLTP 123 Query: 175 AERSAARTNYARAKKLDAEEKHEQWTKYQQLSEEQKKKLAES-KLPKRVAKLPTSPSAAA 233 +R AR NY + L E K E W +YQQL EEQKKKLA + K+P+R + PS Sbjct: 124 QQRRLARENYQITRTLPPETKAEAWDRYQQLPEEQKKKLAAAEKVPRRPGTVSALPSGKR 183 Query: 234 P 234 P Sbjct: 184 P 184