BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2109.p         (174 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775152.1| transmembrane protein [Herbaspirillum serope...   220   5e-56
ref|YP_004751912.1| putative transmembrane protein [Collimonas f...   202   2e-50
emb|CAL61409.2| conserved hypothetical protein; putative RDD dom...   160   8e-38
ref|ZP_08273826.1| putative transmembrane protein [Oxalobacterac...   160   8e-38
ref|YP_001099536.1| hypothetical protein HEAR1233 [Herminiimonas...   159   2e-37

>ref|YP_003775152.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63244.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  220 bits (561), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 130/168 (77%), Positives = 144/168 (85%)

Query: 1   MPEFTTPSLRRRMSSMLYESMLLFGVLFMSGWLFSTLLQQRHALYLRHALEGWLFLVLAI 60
           MP+ TTPSLRRR+SSMLYESMLLFGVLF+SGWLFSTLLQQRHALYLRH LE WLFLVLA+
Sbjct: 1   MPDLTTPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLAL 60

Query: 61  YFAWFWTHGGQTLAMKTWRFRVVDRDGQPLRLGRALLRFVLAWLWILPGLALASLARGQA 120
           YF WFWTHGGQTLAMKTWRFRVVD+ G  L L RA  RF+LAWLW+LPGLALA+   GQ 
Sbjct: 61  YFIWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQ 120

Query: 121 WLLVLIPAANLLLWAMTSRLDPQGQFLHDRLAGTRLVDMTAQPKAAGS 168
           W LVLIPA N++LWA+T+RLD  GQFLHDRLAGTRLVD+TA    + S
Sbjct: 121 WTLVLIPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVTAMAATSKS 168


>ref|YP_004751912.1| putative transmembrane protein [Collimonas fungivorans Ter331]
 gb|AEK61089.1| putative transmembrane protein [Collimonas fungivorans Ter331]
          Length = 182

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 109/162 (67%), Positives = 130/162 (80%)

Query: 6   TPSLRRRMSSMLYESMLLFGVLFMSGWLFSTLLQQRHALYLRHALEGWLFLVLAIYFAWF 65
           TPSL+RR  S++YESMLLFG+LF+SGW+FSTLLQQRHALYLRHA + WLF+VL +YF W 
Sbjct: 15  TPSLKRRFGSIMYESMLLFGILFISGWIFSTLLQQRHALYLRHAQQAWLFIVLTLYFVWC 74

Query: 66  WTHGGQTLAMKTWRFRVVDRDGQPLRLGRALLRFVLAWLWILPGLALASLARGQAWLLVL 125
           W+HGGQTLAMKTWR ++V+RDG  ++ GRA +RF+L+W W LPGLALA       W+LV 
Sbjct: 75  WSHGGQTLAMKTWRIQLVNRDGSAVKAGRAAIRFLLSWCWFLPGLALAWALGAHTWMLVW 134

Query: 126 IPAANLLLWAMTSRLDPQGQFLHDRLAGTRLVDMTAQPKAAG 167
           IPAAN LLWA+T  LDPQ QFLHDR+AGTRLVDM    K  G
Sbjct: 135 IPAANFLLWALTIYLDPQRQFLHDRIAGTRLVDMAEIAKRPG 176


>emb|CAL61409.2| conserved hypothetical protein; putative RDD domain; putative
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 170

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 84/154 (54%), Positives = 113/154 (73%)

Query: 6   TPSLRRRMSSMLYESMLLFGVLFMSGWLFSTLLQQRHALYLRHALEGWLFLVLAIYFAWF 65
           TP+++RR++ M+YE +LLFGV+ ++  LF+ + QQRHALYLRHA + WLF+V+  YF WF
Sbjct: 13  TPTIKRRLTVMIYEGVLLFGVVAIADLLFALIFQQRHALYLRHAAQYWLFIVIGAYFIWF 72

Query: 66  WTHGGQTLAMKTWRFRVVDRDGQPLRLGRALLRFVLAWLWILPGLALASLARGQAWLLVL 125
           W H GQTL MKTWR R+V  DG+ L   RAL R+ LAWLW +PGLA+A L   + W  V 
Sbjct: 73  WMHSGQTLPMKTWRMRLVTLDGRQLPFRRALARYFLAWLWFVPGLAIAWLLGAKEWTAVA 132

Query: 126 IPAANLLLWAMTSRLDPQGQFLHDRLAGTRLVDM 159
           I  AN+L WA+T+ L P  QFLHDR+AGT+++ +
Sbjct: 133 IVMANILAWALTASLHPSRQFLHDRIAGTKIIQL 166


>ref|ZP_08273826.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32690.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 150

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 111/142 (78%)

Query: 16  MLYESMLLFGVLFMSGWLFSTLLQQRHALYLRHALEGWLFLVLAIYFAWFWTHGGQTLAM 75
           MLYE MLLFGVLF++GWLF TLLQQRHALYLR  L+ WLF V+  YF WFW+HGGQTLAM
Sbjct: 1   MLYEGMLLFGVLFIAGWLFGTLLQQRHALYLRGILQYWLFFVMGAYFIWFWSHGGQTLAM 60

Query: 76  KTWRFRVVDRDGQPLRLGRALLRFVLAWLWILPGLALASLARGQAWLLVLIPAANLLLWA 135
           KTWR R+V  DG  + + +A  RF+L+WLW++PGL LA   + Q WLLVLIPAAN+++WA
Sbjct: 61  KTWRVRLVAEDGSRVSVLQASARFLLSWLWVVPGLMLAWRFQAQGWLLVLIPAANVVIWA 120

Query: 136 MTSRLDPQGQFLHDRLAGTRLV 157
               LDP  +F+HDRLA T+LV
Sbjct: 121 GLCWLDPSRRFVHDRLARTKLV 142


>ref|YP_001099536.1| hypothetical protein HEAR1233 [Herminiimonas arsenicoxydans]
          Length = 165

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/154 (54%), Positives = 113/154 (73%)

Query: 6   TPSLRRRMSSMLYESMLLFGVLFMSGWLFSTLLQQRHALYLRHALEGWLFLVLAIYFAWF 65
           TP+++RR++ M+YE +LLFGV+ ++  LF+ + QQRHALYLRHA + WLF+V+  YF WF
Sbjct: 8   TPTIKRRLTVMIYEGVLLFGVVAIADLLFALIFQQRHALYLRHAAQYWLFIVIGAYFIWF 67

Query: 66  WTHGGQTLAMKTWRFRVVDRDGQPLRLGRALLRFVLAWLWILPGLALASLARGQAWLLVL 125
           W H GQTL MKTWR R+V  DG+ L   RAL R+ LAWLW +PGLA+A L   + W  V 
Sbjct: 68  WMHSGQTLPMKTWRMRLVTLDGRQLPFRRALARYFLAWLWFVPGLAIAWLLGAKEWTAVA 127

Query: 126 IPAANLLLWAMTSRLDPQGQFLHDRLAGTRLVDM 159
           I  AN+L WA+T+ L P  QFLHDR+AGT+++ +
Sbjct: 128 IVMANILAWALTASLHPSRQFLHDRIAGTKIIQL 161