BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2102.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775146.1| ribosomal small subunit pseudouridine syntha... 466 e-129 ref|YP_004754846.1| ribosomal small subunit pseudouridine syntha... 396 e-108 ref|YP_001353640.1| ribosomal small subunit pseudouridine syntha... 393 e-107 ref|YP_001099979.1| 16S rRNA pseudouridylate 516 synthase [Hermi... 391 e-107 ref|YP_003523874.1| pseudouridine synthase [Sideroxydans lithotr... 353 8e-96 >ref|YP_003775146.1| ribosomal small subunit pseudouridine synthase A [Herbaspirillum seropedicae SmR1] gb|ADJ63238.1| ribosomal small subunit pseudouridine synthase A protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 234/240 (97%), Positives = 235/240 (97%) Query: 1 MAKLTLDRILQSQGFGSRKYCRELIEDGEVSINGEVVDDYRATPDTNGLVLTIFEEEWEY 60 MAKLTLDRILQSQGFGSRKYCRELIEDGEV INGEVVDDYRATPDT LVLTIFEEEWEY Sbjct: 1 MAKLTLDRILQSQGFGSRKYCRELIEDGEVVINGEVVDDYRATPDTKDLVLTIFEEEWEY 60 Query: 61 REHVYIAINKPQNIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120 REHVYIAINKP NIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA Sbjct: 61 REHVYIAINKPPNIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120 Query: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGENLLEI 180 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGENLLEI Sbjct: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGENLLEI 180 Query: 181 VLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLEALELEEGEWTYLDAEQMALLVPDAE 240 VLEQGKYHQVKRMLAAAGNHCSAL+RTAIGGLQLEAL LEEGEWTYLDAEQMALLVPDAE Sbjct: 181 VLEQGKYHQVKRMLAAAGNHCSALQRTAIGGLQLEALALEEGEWTYLDAEQMALLVPDAE 240 >ref|YP_004754846.1| ribosomal small subunit pseudouridine synthase A [Collimonas fungivorans Ter331] gb|AEK64023.1| Ribosomal small subunit pseudouridine synthase A [Collimonas fungivorans Ter331] Length = 238 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 190/237 (80%), Positives = 209/237 (88%) Query: 1 MAKLTLDRILQSQGFGSRKYCRELIEDGEVSINGEVVDDYRATPDTNGLVLTIFEEEWEY 60 M KLTLDRILQSQGFGSRKYCRELIEDGEV ING V DY++TPDT+GLV T+FEEEW Y Sbjct: 1 MPKLTLDRILQSQGFGSRKYCRELIEDGEVVINGAAVTDYKSTPDTDGLVFTLFEEEWTY 60 Query: 61 REHVYIAINKPQNIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120 REHVYI +NKP +IECSRKPSHHPGVL++LPEQF+WRDVQPVGRLDHDTTGLLLMSDDG+ Sbjct: 61 REHVYIVLNKPADIECSRKPSHHPGVLSILPEQFSWRDVQPVGRLDHDTTGLLLMSDDGS 120 Query: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGENLLEI 180 FIHAQSSPKRHVPK+Y ATT +PVTE L+ L AGV+LHDEP LAA CR LG + +EI Sbjct: 121 FIHAQSSPKRHVPKLYVATTHDPVTEELVQSLLAGVKLHDEPQTLAAVSCRVLGTHEIEI 180 Query: 181 VLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLEALELEEGEWTYLDAEQMALLVP 237 VLEQGKYHQVKRML AAGNHC+ALRRTAIGGL LEALELE GEW YL+ E +ALLVP Sbjct: 181 VLEQGKYHQVKRMLVAAGNHCTALRRTAIGGLTLEALELEIGEWCYLEPEHLALLVP 237 >ref|YP_001353640.1| ribosomal small subunit pseudouridine synthase A protein [Janthinobacterium sp. Marseille] gb|ABR89883.1| ribosomal small subunit pseudouridine synthase A protein [Janthinobacterium sp. Marseille] Length = 238 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 190/237 (80%), Positives = 204/237 (86%) Query: 1 MAKLTLDRILQSQGFGSRKYCRELIEDGEVSINGEVVDDYRATPDTNGLVLTIFEEEWEY 60 M+KLTLDRILQSQGFG+RKYCR LIEDGEVSINGE V DYRA DT+ L TIF+E W Y Sbjct: 1 MSKLTLDRILQSQGFGTRKYCRNLIEDGEVSINGESVTDYRAAFDTSDLEFTIFDEVWRY 60 Query: 61 REHVYIAINKPQNIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120 R+HVYI +NKP N ECSRKPSHHPGVLTLLPEQFTWR++QPVGRLDHDTTG+LLMSDDG Sbjct: 61 RQHVYIVLNKPANFECSRKPSHHPGVLTLLPEQFTWRELQPVGRLDHDTTGMLLMSDDGP 120 Query: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGENLLEI 180 FIHAQSSPKRH+PKVY ATT +PVT LIAQL GVQLHDEPAPLAA CR LG N LEI Sbjct: 121 FIHAQSSPKRHIPKVYVATTHDPVTPELIAQLLGGVQLHDEPAPLAAQTCRMLGANELEI 180 Query: 181 VLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLEALELEEGEWTYLDAEQMALLVP 237 VLEQGKYHQVKRMLAAAGNHCSALRR AIG L LE+LEL+EGEW YL Q+ALL P Sbjct: 181 VLEQGKYHQVKRMLAAAGNHCSALRRVAIGALTLESLELDEGEWAYLTDAQLALLAP 237 >ref|YP_001099979.1| 16S rRNA pseudouridylate 516 synthase [Herminiimonas arsenicoxydans] emb|CAL61854.1| putative 16S rRNA uridine-516 pseudouridylate synthase [Herminiimonas arsenicoxydans] Length = 244 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 189/239 (79%), Positives = 205/239 (85%) Query: 1 MAKLTLDRILQSQGFGSRKYCRELIEDGEVSINGEVVDDYRATPDTNGLVLTIFEEEWEY 60 M+KLTLDRILQSQGFG+RKYCR LIEDGEVSING VVD+++ DT L TIF+E W Y Sbjct: 1 MSKLTLDRILQSQGFGTRKYCRGLIEDGEVSINGVVVDNFKTAVDTTDLEFTIFDEVWRY 60 Query: 61 REHVYIAINKPQNIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120 REHVYI +NKP N ECSRKPSHHPGVLTLLPEQFTWRD+QPVGRLDHDTTG+LLMSDDG Sbjct: 61 REHVYIVLNKPANFECSRKPSHHPGVLTLLPEQFTWRDLQPVGRLDHDTTGMLLMSDDGP 120 Query: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGENLLEI 180 FIHAQSSPKRH+PK+Y ATT +PVT LIAQL GVQLHDEPAPLAA CR L E+ +EI Sbjct: 121 FIHAQSSPKRHIPKIYVATTHDPVTPELIAQLLGGVQLHDEPAPLAAQTCRMLAEHQIEI 180 Query: 181 VLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLEALELEEGEWTYLDAEQMALLVPDA 239 VLEQGKYHQVKRMLAAAGNHCSAL R IG L LE+L LEEGEWTYLDAEQ+ALL P A Sbjct: 181 VLEQGKYHQVKRMLAAAGNHCSALNRAEIGELTLESLGLEEGEWTYLDAEQLALLRPSA 239 >ref|YP_003523874.1| pseudouridine synthase [Sideroxydans lithotrophicus ES-1] gb|ADE11487.1| pseudouridine synthase [Sideroxydans lithotrophicus ES-1] Length = 241 Score = 353 bits (907), Expect = 8e-96, Method: Composition-based stats. Identities = 170/235 (72%), Positives = 195/235 (82%) Query: 1 MAKLTLDRILQSQGFGSRKYCRELIEDGEVSINGEVVDDYRATPDTNGLVLTIFEEEWEY 60 M+KL LDRILQSQGFG+RK+CRELIEDGEV + G+ + DYR +T+ L +++ E W + Sbjct: 1 MSKLPLDRILQSQGFGTRKWCRELIEDGEVLVAGDSITDYRHAFETDNLEFSVYGESWRF 60 Query: 61 REHVYIAINKPQNIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120 REHVYIA+NKP + ECSRKPSHHPGVL+LLPEQF RDVQPVGRLDHDTTGLLLMSDDGA Sbjct: 61 REHVYIALNKPADYECSRKPSHHPGVLSLLPEQFALRDVQPVGRLDHDTTGLLLMSDDGA 120 Query: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGENLLEI 180 FIHAQSSPKRH+PKVY ATT +PVT L+ QL +GV+LHDEPAPLAA C L L+I Sbjct: 121 FIHAQSSPKRHIPKVYVATTHDPVTPQLVRQLMSGVKLHDEPAPLAAVVCNMLDTCQLKI 180 Query: 181 VLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLEALELEEGEWTYLDAEQMALL 235 VLEQGKYHQVKRMLAAAGNHC+ALRRT IG L+LEAL L EGEW YL ++ALL Sbjct: 181 VLEQGKYHQVKRMLAAAGNHCTALRRTEIGKLRLEALGLAEGEWCYLGEAELALL 235