BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2101.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum ... 498 e-139 ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacteri... 341 8e-92 ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacter... 340 2e-91 ref|YP_004753138.1| tRNA:Cm32/Um32 methyltransferase [Collimonas... 338 4e-91 ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Hermin... 337 9e-91 >ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 270/275 (98%), Positives = 275/275 (100%) Query: 1 MNKQVSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAIA 60 MNKQVSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEA+A Sbjct: 1 MNKQVSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVA 60 Query: 61 FASGALDVLQNARILGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA 120 FASGALDVLQNARI+GSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA Sbjct: 61 FASGALDVLQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA 120 Query: 121 ALLFGNERFGLPNEVVQKCNALLNIPANPDYSSLNLSQAVQVLAYECRMTELEVQGGPMQ 180 ALLFGNERFGLPNEVVQKCNALLNIPANP+YSSLNLSQAVQVLAYECRMTELEVQGGPMQ Sbjct: 121 ALLFGNERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQ 180 Query: 181 TSGDARAPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQ 240 TSGDAR+PGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQ Sbjct: 181 TSGDARSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQ 240 Query: 241 LETEEVNILRGIARQILEPKQAKAGRQEQNEQGEG 275 LETEEVNILRGIARQILEPKQAKAGR+EQNEQGEG Sbjct: 241 LETEEVNILRGIARQILEPKQAKAGRREQNEQGEG 275 >ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] Length = 253 Score = 341 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 180/251 (71%), Positives = 214/251 (85%), Gaps = 10/251 (3%) Query: 10 LFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAIAFASGALDVL 69 LF+RLRF+LV TS PGNIG+AARAIK MGF+ELVLVNPRFPDA ++EA+AFASGA D+L Sbjct: 10 LFNRLRFILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVAFASGAQDIL 69 Query: 70 QNARILGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFGNERF 129 Q ARI+GS+EEAL CNFAAAV+ARLREFSPPV+SPR LA +L +TGL AA++FGNERF Sbjct: 70 QAARIVGSIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEETGLRAAVVFGNERF 129 Query: 130 GLPNEVVQKCNALLNIPANPDYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARAPG 189 GLPNE+V+KCN L+NI ANPDYSSLNL+QAVQVLAYE RM + G+ RA Sbjct: 130 GLPNEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAV----------GETRAAT 179 Query: 190 EVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVNIL 249 ++GF G++AS+A+I+GM+AHLEQALVAIDFL+ +NPKKLMPRLKR+FSR QLETEEVNIL Sbjct: 180 DIGFQGEAASMAQIDGMYAHLEQALVAIDFLDANNPKKLMPRLKRLFSRTQLETEEVNIL 239 Query: 250 RGIARQILEPK 260 RGIA+QIL K Sbjct: 240 RGIAKQILAQK 250 >ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 178/257 (69%), Positives = 207/257 (80%), Gaps = 10/257 (3%) Query: 1 MNKQVSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAIA 60 MN SLF+RLRFVLV TS PGNIG+AARA+KTMGF++LVLVNPRF DA ++DEA+A Sbjct: 1 MNTAQIDTSLFTRLRFVLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVA 60 Query: 61 FASGALDVLQNARILGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA 120 FASGA DVL NARI+GS+EEAL CN+AAAVSARLREFSPPV PR+ A +++ + L Sbjct: 61 FASGAQDVLANARIVGSIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAALRV 120 Query: 121 ALLFGNERFGLPNEVVQKCNALLNIPANPDYSSLNLSQAVQVLAYECRMTELEVQGGPMQ 180 AL+ GNERFGLPNE+V+KCN L+NIPANP YSSLNL QAVQVLAYECRM L Sbjct: 121 ALVLGNERFGLPNEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAAL-------- 172 Query: 181 TSGDARAPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQ 240 GD EVGFHG +AS+ ++EGM+ HLEQALVAIDFL PD+PKKLMPRLKR+F+R Sbjct: 173 --GDDAIATEVGFHGDAASLTQVEGMYQHLEQALVAIDFLKPDSPKKLMPRLKRLFARTG 230 Query: 241 LETEEVNILRGIARQIL 257 LETEEVNILRGIA+QIL Sbjct: 231 LETEEVNILRGIAKQIL 247 >ref|YP_004753138.1| tRNA:Cm32/Um32 methyltransferase [Collimonas fungivorans Ter331] gb|AEK62315.1| tRNA:Cm32/Um32 methyltransferase [Collimonas fungivorans Ter331] Length = 258 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 181/261 (69%), Positives = 215/261 (82%), Gaps = 8/261 (3%) Query: 1 MNKQVSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAIA 60 MN+ SLF+RLRFVLV TSSPGN+G+AARAIKTMGFSEL+LVNPRFPD ++ DEA+A Sbjct: 1 MNQAKINTSLFNRLRFVLVETSSPGNVGAAARAIKTMGFSELILVNPRFPDVLQRDEAVA 60 Query: 61 FASGALDVLQNARILGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA 120 FASGA D+L ARI+ SVE+AL+GCNFAAA+SARLREFSPP+ +PR LA QL D LNA Sbjct: 61 FASGAQDILAAARIVDSVEQALEGCNFAAALSARLREFSPPLTAPRALAAQLVADASLNA 120 Query: 121 ALLFGNERFGLPNEVVQKCNALLNIPANPDYSSLNLSQAVQVLAYECRMTELEVQGGPMQ 180 A++FG+ER+GLPNE+V+KCN LLNIPANP+YSSLNL+QAVQVLAYECR+ E Sbjct: 121 AVIFGSERYGLPNEIVEKCNVLLNIPANPEYSSLNLAQAVQVLAYECRVAASE------- 173 Query: 181 TSGDARAPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQ 240 GEVGF G +AS+A+I+GMFAHLEQALV I+FL+P +PKKLMPRLKR+FSR Q Sbjct: 174 -DLSPATGGEVGFQGNAASLADIDGMFAHLEQALVEIEFLDPASPKKLMPRLKRLFSRTQ 232 Query: 241 LETEEVNILRGIARQILEPKQ 261 LETEEVNILRGIA QIL ++ Sbjct: 233 LETEEVNILRGIASQILNKRR 253 >ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] Length = 248 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 180/252 (71%), Positives = 213/252 (84%), Gaps = 9/252 (3%) Query: 10 LFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAIAFASGALDVL 69 LF+RLRFVLV TS PGNIG+AARAIK MGFSELVLVNPRFPDA ++EAIAFASGA D+L Sbjct: 3 LFNRLRFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDIL 62 Query: 70 QNARILGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFGNERF 129 +ARI+GS+EEAL CN+AAAV+ARLREFSPPV++PRELA +L+ + GL AA++FGNERF Sbjct: 63 ASARIVGSIEEALADCNYAAAVTARLREFSPPVITPRELATRLADEAGLQAAVIFGNERF 122 Query: 130 GLPNEVVQKCNALLNIPANPDYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARAPG 189 GLPNE+V+KCN L+NIPANPDYSSLNL+QAVQVLAYE RM + P S Sbjct: 123 GLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMA--AIVDAPSAVS------- 173 Query: 190 EVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVNIL 249 +GF G++A +A+IEGM+AHLEQALVAIDFL+ DNPKKLMPRLKR+FSR QLETEEVNIL Sbjct: 174 NIGFQGEAAGMAQIEGMYAHLEQALVAIDFLDADNPKKLMPRLKRLFSRTQLETEEVNIL 233 Query: 250 RGIARQILEPKQ 261 RGIA+QIL ++ Sbjct: 234 RGIAKQILAKQK 245