BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2096.p (516 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum s... 799 0.0 ref|YP_004753141.1| ATP-dependent RNA helicase RhlE [Collimonas ... 627 e-177 ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacteriu... 613 e-173 ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofi... 592 e-167 ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkhold... 591 e-166 >ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 484/523 (92%), Positives = 489/523 (93%), Gaps = 10/523 (1%) Query: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL Sbjct: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 QRLSAMPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI 120 QRLSAMPRQKINGH+PIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI Sbjct: 61 QRLSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI 120 Query: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP Sbjct: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180 Query: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHL 240 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHL Sbjct: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHL 240 Query: 241 IKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTAL 300 IKTHQWKQVLVFTRTKHGANKLVEQL RDGITAMAIHGNKSQSARTKALAEFKDGKLTAL Sbjct: 241 IKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTAL 300 Query: 301 IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLHD 360 IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVC+DERDLLHD Sbjct: 301 IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLHD 360 Query: 361 IERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAANGNGN 420 IERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAAN Sbjct: 361 IERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAAN---G 417 Query: 421 SAAAKPAKPASGGNGGNGGQAAKPRPAANGNAARGQGARAGNAGGNGS-------NGGNG 473 + A AKPA NGGNGGQ AKPRPAANGN G G+ G S NGGNG Sbjct: 418 NGNAAAAKPAKPANGGNGGQPAKPRPAANGNGNGNGGRGQGHGQGARSGNAGGNGNGGNG 477 Query: 474 GNNANRAPKPAHANNQPRNPGQPRQGGPRPSALTHGGQRAAGK 516 GNNANRAPKPAH N+QPRN GQPRQGGPRPSALTHGGQRAAGK Sbjct: 478 GNNANRAPKPAHGNSQPRNSGQPRQGGPRPSALTHGGQRAAGK 520 >ref|YP_004753141.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331] gb|AEK62318.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331] Length = 448 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 344/455 (75%), Positives = 375/455 (82%), Gaps = 8/455 (1%) Query: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 MSFS LGLS+ IVRAV+E GYT+PTPIQ QA+PAVL+GGDLLAGAQTGTGKTAGFTLP+L Sbjct: 1 MSFSELGLSEAIVRAVTEHGYTTPTPIQTQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVL 60 Query: 61 QRLSAMPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI 120 RLS PIRAL+L PTRELAAQVEESVR YGKYL LTSA IFGGVGINPQI Sbjct: 61 HRLSTSATNPTGSQRPIRALVLTPTRELAAQVEESVRLYGKYLKLTSAVIFGGVGINPQI 120 Query: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180 LLK GVDILV TPGRLLDHMQQGTVNL H++IL+LDEADRMLDMGFIRDI+K+LA LP Sbjct: 121 KLLKHGVDILVCTPGRLLDHMQQGTVNLNHVEILILDEADRMLDMGFIRDIKKILAVLPK 180 Query: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHL 240 KRQNLLFSATF+DEIK LAD+LLN+PA+IEVARRNSTVEVI QKIHPVDRD+KHP+LAHL Sbjct: 181 KRQNLLFSATFSDEIKILADNLLNSPAMIEVARRNSTVEVIQQKIHPVDRDRKHPLLAHL 240 Query: 241 IKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTAL 300 IKTHQW QVLVFTRTKHGANKLVEQL +DGI+ MAIHGNKSQSART+ALAEFKDG L L Sbjct: 241 IKTHQWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALAEFKDGSLQVL 300 Query: 301 IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLHD 360 +ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE +L D Sbjct: 301 VATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEHQMLKD 360 Query: 361 IERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAANGNGN 420 IE+ IKRE+P EVIAGFEPDP A+ QPIQLRSG G GG GG + A G Sbjct: 361 IEKLIKRELPKEVIAGFEPDPNARAQPIQLRSGGGGGNRSGGGGGGGRGRQGAAPGG--- 417 Query: 421 SAAAKPAK-PASGGNGGNGGQAAKPRPAANGNAAR 454 KP++ P+ G GGNG P +G R Sbjct: 418 ----KPSQGPSRGHGGGNGAAPRPAAPRRSGGRGR 448 >ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 448 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 339/447 (75%), Positives = 373/447 (83%), Gaps = 12/447 (2%) Query: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 MSF+ LGL++ IVRAV+E GYT+PTPIQAQA+PAVL+GGDLLAGAQTGTGKTAGFTLP+L Sbjct: 1 MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 QRL--SAMPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINP 118 RL S P + PIRAL+L PTRELAAQVEESVR YGKYL L SA IFGGVGINP Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINP 120 Query: 119 QITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAAL 178 QI +LK GVDILVATPGRLLDHMQQGTVNL HIQILVLDEADRMLDMGFI+DIR+VLAAL Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAAL 180 Query: 179 PPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLA 238 P RQNLLFSATF++EIK LAD LLN+PA IEVARRNSTVE+I QKIHPVDRDKKHPMLA Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLA 240 Query: 239 HLIKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLT 298 HLIK++ W QVLVFTRTKHGANKLVEQL +DGI+ MAIHGNKSQSART+AL+EFKDG L Sbjct: 241 HLIKSNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQ 300 Query: 299 ALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLL 358 L+ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE ++L Sbjct: 301 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELEML 360 Query: 359 HDIERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQ--GRHQNGGGRGGQRSAPRKPAAN 416 DIE+ IKR++P EVI GFEPD AKPQPIQ RS GR G GR + + PA Sbjct: 361 KDIEKLIKRKLPSEVIPGFEPDLNAKPQPIQRRSNDAPGRRPQGQGRNAPAKSAKAPAPK 420 Query: 417 GNGNS-------AAAKPAKP-ASGGNG 435 NG+S + A+PA P SGG G Sbjct: 421 PNGSSRGGFGGNSNARPAAPHRSGGRG 447 >ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN] gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 515 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 347/523 (66%), Positives = 395/523 (75%), Gaps = 19/523 (3%) Query: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 MSF +LGLS+ +VRAV E GYT+PTPIQ QA+PAVL+GGDLLAGAQTGTGKTAGFTLP+L Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 QRLSAMPRQKI-NGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQ 119 QRL+ MP +G +RALIL PTRELAAQVEESVR YGKYL L S +FGGVGINPQ Sbjct: 61 QRLNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120 Query: 120 ITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALP 179 I L+ GVDI+VATPGRLLDHMQQ T++L H++ILVLDEADRMLDMGFI DI++VLA LP Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180 Query: 180 PKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAH 239 PKRQNLLFSATF+DEIK LAD+LL++PALIEVARRN+T E +AQKIHPVDRDKK +L H Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240 Query: 240 LIKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTA 299 LIK H W QVLVFTRTKHGAN+L EQL +D I+A+AIHGNKSQSART+ALAEFKDG L Sbjct: 241 LIKQHNWFQVLVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGTLQV 300 Query: 300 LIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLH 359 L+ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEA+SLVCVDE LL Sbjct: 301 LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLK 360 Query: 360 DIERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAANGNG 419 DIE+ IKR +P EVIAGFEPDPTAKP+PI R G G + AP++ A Sbjct: 361 DIEKLIKRPVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQGQGAPKRDGA---- 416 Query: 420 NSAAAKPAKPASGGNGGNGGQAAKP---RPAANGNAARGQGARAGNAGGNGSNGGNGGNN 476 +AKPA+ SG NG Q KP +PA NG R G R + ++ G+ + Sbjct: 417 --GSAKPAQ-RSGQRPANGQQQPKPQGAKPAGNGGQPRRDGQRHDDRPRAVAHEGSAAQH 473 Query: 477 ANRAPKPAHANNQPRNPG------QPRQGGPRPSALTHGGQRA 513 A R KP A Q NPG +PR PR T GQR Sbjct: 474 APR--KPQGAKPQGGNPGALLGGAKPRNDAPRGGQPTRSGQRG 514 >ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400] gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400] Length = 543 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 348/524 (66%), Positives = 400/524 (76%), Gaps = 15/524 (2%) Query: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 MSF +LGLS+ +VRAV E GYT+PTPIQ QA+PAVL+GGDLLAGAQTGTGKTAGFTLP+L Sbjct: 23 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 82 Query: 61 QRLSAMPR-QKINGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQ 119 QRL++ P +G +RALIL PTRELAAQVEESVR YGKYL L S +FGGVGINPQ Sbjct: 83 QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 142 Query: 120 ITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALP 179 I L+ GVDI+VATPGRLLDHMQQ T++L H++ILVLDEADRMLDMGFI DI++VLA LP Sbjct: 143 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 202 Query: 180 PKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAH 239 PKRQNLLFSATF+DEIK LAD+LL++PALIEVARRN+T E +AQKIHPVDRDKK +L H Sbjct: 203 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 262 Query: 240 LIKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTA 299 LIK H W QVLVFTRTKHGAN+L EQL +DGI+A+AIHGNKSQSART+ALAEFKDG L Sbjct: 263 LIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQV 322 Query: 300 LIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLH 359 L+ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE LL Sbjct: 323 LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLK 382 Query: 360 DIERFIKREIPVEVIAGFEPDPTAKPQPI-QLRSGQGRHQNGGGRGGQRSAPRKPAANGN 418 DIE+ IKR +P EV+AGFEPDPTAKP+PI + G G G + AP++ A + Sbjct: 383 DIEKLIKRPVPQEVVAGFEPDPTAKPEPILRRGQGGGGGGGGRSPRQGQGAPKRDDARRD 442 Query: 419 GNSAAAKPAKPASGGNGGNGGQAAKP---RPAANGNAARGQGARAGNAGGNGSNGGNGGN 475 G + +AKPA+ SG NG Q KP +PA NG R G R + ++ G+ Sbjct: 443 G-AGSAKPAQ-RSGQRPANGQQQPKPQGAKPAGNGGQPRRDGQRHDDRPRAVAHEGSAAQ 500 Query: 476 NANRAPKPAHANNQPRNPG------QPRQGGPRPSALTHGGQRA 513 +A R KP A Q NPG +PR PR T GQR Sbjct: 501 HAPR--KPQAAKPQGGNPGALLGGTKPRNDAPRGGQPTRSGQRG 542