BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2091.p         (108 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004753455.1| putative Vgr-like protein [Collimonas fungiv...   162   2e-38
ref|ZP_04941040.1| hypothetical protein BCPG_02527 [Burkholderia...   129   1e-28
ref|YP_001816411.1| type VI secretion system Vgr family protein ...   115   2e-24
ref|YP_621290.1| Rhs element Vgr protein [Burkholderia cenocepac...   110   9e-23
ref|YP_369750.1| Rhs element Vgr protein [Burkholderia sp. 383] ...   106   1e-21

>ref|YP_004753455.1| putative Vgr-like protein [Collimonas fungivorans Ter331]
 gb|AEK62632.1| putative Vgr-related protein [Collimonas fungivorans Ter331]
          Length = 933

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/96 (81%), Positives = 86/96 (89%)

Query: 1  MNLADALQAFASSSLNQSNRAIQLHWGKAQSTLEQVLVVQRIDIREGLYTGIEGHLTCLS 60
          MNLADALQAFAS SLNQ NR I+LHWG AQ+TLEQVLVVQRIDI EGL  GIEGHLTCLS
Sbjct: 1  MNLADALQAFASGSLNQENRPIRLHWGNAQTTLEQVLVVQRIDITEGLCAGIEGHLTCLS 60

Query: 61 TRSDLPLKTFLGLPVAVRLVTDRGALHEICGLITDA 96
          TRS+LPL  F+GLPV+V+LV DRGALH+ICG+ITDA
Sbjct: 61 TRSNLPLNAFIGLPVSVQLVNDRGALHQICGIITDA 96


>ref|ZP_04941040.1| hypothetical protein BCPG_02527 [Burkholderia cenocepacia PC184]
 gb|EAY64211.1| hypothetical protein BCPG_02527 [Burkholderia cenocepacia PC184]
          Length = 925

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/95 (61%), Positives = 78/95 (82%)

Query: 1  MNLADALQAFASSSLNQSNRAIQLHWGKAQSTLEQVLVVQRIDIREGLYTGIEGHLTCLS 60
          MN A+ L+AFAS  ++Q+NR ++++WG AQ TLEQVL +Q  DIREGL TGIEGHLTC+S
Sbjct: 1  MNTAELLRAFASGVVDQNNRPVRMNWGPAQKTLEQVLALQYADIREGLMTGIEGHLTCVS 60

Query: 61 TRSDLPLKTFLGLPVAVRLVTDRGALHEICGLITD 95
           R+DLP+++F+GLPV+V + TDRG LH I G++TD
Sbjct: 61 ARADLPIRSFIGLPVSVEMTTDRGRLHTINGIVTD 95


>ref|YP_001816411.1| type VI secretion system Vgr family protein [Burkholderia
          ambifaria MC40-6]
 gb|ACB68858.1| type VI secretion system Vgr family protein [Burkholderia
          ambifaria MC40-6]
          Length = 955

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 7  LQAFASSSLNQSNRAIQLHWGKAQSTLEQVLVVQRIDIREGLYTGIEGHLTCLSTRSDLP 66
          L+AFAS+ L+Q+NRAI+ HWG+ Q  L  VLV Q ID+ EGL  GIEGHLTCLS+R DLP
Sbjct: 2  LRAFASA-LDQNNRAIRFHWGRHQDALAHVLVPQNIDLTEGLCAGIEGHLTCLSSRPDLP 60

Query: 67 LKTFLGLPVAVRLVTDRGALHEICGLITD 95
          L TFLGLP++V+L+TDRG  + I G+ITD
Sbjct: 61 LATFLGLPLSVQLITDRGKPYPINGIITD 89


>ref|YP_621290.1| Rhs element Vgr protein [Burkholderia cenocepacia AU 1054]
 ref|YP_840041.1| Rhs element Vgr protein [Burkholderia cenocepacia HI2424]
 gb|ABF76317.1| Rhs element Vgr protein [Burkholderia cenocepacia AU 1054]
 gb|ABK13148.1| Rhs element Vgr protein [Burkholderia cenocepacia HI2424]
          Length = 956

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/89 (60%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 7  LQAFASSSLNQSNRAIQLHWGKAQSTLEQVLVVQRIDIREGLYTGIEGHLTCLSTRSDLP 66
          L+AF  + L+Q+NRAI+ HWG+ Q  L  VLV Q ID+ EGL  GIEGHLTCLS+R DLP
Sbjct: 2  LRAFVGA-LDQNNRAIRFHWGRHQDALAHVLVPQSIDLTEGLCVGIEGHLTCLSSRPDLP 60

Query: 67 LKTFLGLPVAVRLVTDRGALHEICGLITD 95
          L  FLGLP++V+L+TDRG  + I G+ITD
Sbjct: 61 LSAFLGLPLSVQLMTDRGKPYPINGIITD 89


>ref|YP_369750.1| Rhs element Vgr protein [Burkholderia sp. 383]
 gb|ABB09106.1| Rhs element Vgr protein [Burkholderia sp. 383]
          Length = 902

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/72 (65%), Positives = 60/72 (83%)

Query: 24 LHWGKAQSTLEQVLVVQRIDIREGLYTGIEGHLTCLSTRSDLPLKTFLGLPVAVRLVTDR 83
          ++WG AQ TLEQVL +Q  DIREGL TGIEGHLTC+S R+DLP+++F+GLPV+V + TDR
Sbjct: 1  MNWGPAQKTLEQVLALQYADIREGLMTGIEGHLTCVSARADLPIRSFIGLPVSVEMTTDR 60

Query: 84 GALHEICGLITD 95
          G LH I G++TD
Sbjct: 61 GRLHTINGIVTD 72