BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2085.p         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004753452.1| PAAR motif family [Collimonas fungivorans Te...   125   2e-27
ref|YP_004349130.1| PAAR motif-containing protein [Burkholderia ...   119   1e-25
ref|YP_438294.1| PAAR motif-containing protein [Burkholderia tha...   112   1e-23
ref|YP_336743.1| PAAR motif-containing protein [Burkholderia pse...   112   2e-23
ref|ZP_02364330.1| paar motif family protein [Burkholderia oklah...   111   3e-23

>ref|YP_004753452.1| PAAR motif family [Collimonas fungivorans Ter331]
 gb|AEK62629.1| PAAR motif family [Collimonas fungivorans Ter331]
          Length = 87

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/87 (80%), Positives = 78/87 (89%)

Query: 1  MRGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLID 60
          MRG+IR GDSTSHGGKVVTGQ+KS+VM R VACVGD C+CP+ GHHDCVIVEGDP V ID
Sbjct: 1  MRGVIRKGDSTSHGGKVVTGQEKSLVMERPVACVGDRCTCPMPGHHDCVIVEGDPAVQID 60

Query: 61 GKAVAFEGHKTSCGASLISSMESSGRT 87
          GK VAF+GHKTSCGA+LISS+ SSGRT
Sbjct: 61 GKNVAFDGHKTSCGAALISSITSSGRT 87


>ref|YP_004349130.1| PAAR motif-containing protein [Burkholderia gladioli BSR3]
 gb|AEA63618.1| PAAR motif-containing protein [Burkholderia gladioli BSR3]
          Length = 87

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/87 (79%), Positives = 78/87 (89%)

Query: 1  MRGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLID 60
          MRG+IR+GD+TSHGGKVVTG+D S VMGRAVACVGD C+CP+SGH  CVIVEGDP VLID
Sbjct: 1  MRGVIRIGDATSHGGKVVTGRDTSTVMGRAVACVGDRCTCPMSGHEHCVIVEGDPQVLID 60

Query: 61 GKAVAFEGHKTSCGASLISSMESSGRT 87
          G AVAF+GH TSCGA+LISS+ SSGRT
Sbjct: 61 GVAVAFDGHHTSCGATLISSVPSSGRT 87


>ref|YP_438294.1| PAAR motif-containing protein [Burkholderia thailandensis E264]
 ref|YP_443722.1| PAAR motif-containing protein [Burkholderia thailandensis E264]
 ref|ZP_05589584.1| PAAR motif-containing protein [Burkholderia thailandensis E264]
 gb|ABC34915.1| PAAR motif family [Burkholderia thailandensis E264]
 gb|ABC38941.1| PAAR motif family [Burkholderia thailandensis E264]
          Length = 87

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/87 (72%), Positives = 78/87 (89%)

Query: 1  MRGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLID 60
          MRG+IR+GDSTSHGG+VVTG++ S VMGRAVACVGD C+CP++GH  CVIVEGD  V I+
Sbjct: 1  MRGVIRIGDSTSHGGRVVTGREGSTVMGRAVACVGDRCTCPMNGHEHCVIVEGDEGVRIE 60

Query: 61 GKAVAFEGHKTSCGASLISSMESSGRT 87
          G+AVAF+GH+TSCGA+LISS+ +SGRT
Sbjct: 61 GRAVAFDGHRTSCGATLISSIPTSGRT 87


>ref|YP_336743.1| PAAR motif-containing protein [Burkholderia pseudomallei 1710b]
 ref|ZP_03454306.1| PAAR motif family protein [Burkholderia pseudomallei 576]
 ref|ZP_04521752.1| PAAR motif protein [Burkholderia pseudomallei MSHR346]
 ref|ZP_04890150.1| PAAR motif family protein [Burkholderia pseudomallei 1655]
 ref|ZP_04901871.1| PAAR motif family protein [Burkholderia pseudomallei S13]
 ref|ZP_04954337.1| PAAR motif protein [Burkholderia pseudomallei 1710a]
 ref|ZP_04967229.1| PAAR motif family protein [Burkholderia pseudomallei 406e]
 gb|ABA51209.1| PAAR motif family [Burkholderia pseudomallei 1710b]
 gb|EDO86454.1| PAAR motif family protein [Burkholderia pseudomallei 406e]
 gb|EDS84883.1| PAAR motif family protein [Burkholderia pseudomallei S13]
 gb|EDU11134.1| PAAR motif family protein [Burkholderia pseudomallei 1655]
 gb|EEC33732.1| PAAR motif family protein [Burkholderia pseudomallei 576]
 gb|EEP50666.1| PAAR motif protein [Burkholderia pseudomallei MSHR346]
 gb|EET03859.1| PAAR motif protein [Burkholderia pseudomallei 1710a]
          Length = 87

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/86 (70%), Positives = 77/86 (89%)

Query: 1  MRGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLID 60
          MRG+IR+GDSTSHGG+V TG++ S VMGRAVACVGD C+CP++GH  CVIVEGD +V I+
Sbjct: 1  MRGVIRIGDSTSHGGRVETGREGSTVMGRAVACVGDRCTCPMNGHEHCVIVEGDEDVRIE 60

Query: 61 GKAVAFEGHKTSCGASLISSMESSGR 86
          G+AVAF+GH+TSCGA+L+SSM +SGR
Sbjct: 61 GRAVAFDGHRTSCGATLVSSMPTSGR 86


>ref|ZP_02364330.1| paar motif family protein [Burkholderia oklahomensis C6786]
          Length = 87

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/87 (71%), Positives = 75/87 (86%)

Query: 1  MRGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLID 60
          MRG+IR+GDSTSHGG+V TG++ S VMGRAVAC GD C+CP++GH  CVI EGD +V ID
Sbjct: 1  MRGVIRIGDSTSHGGRVETGRENSTVMGRAVACAGDRCTCPMAGHDRCVIAEGDEDVRID 60

Query: 61 GKAVAFEGHKTSCGASLISSMESSGRT 87
          G+AVAF+GHKTSCGA+LISS+  SGRT
Sbjct: 61 GRAVAFDGHKTSCGATLISSISQSGRT 87