BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2083.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775136.1| proline/glycine betaine ABC transporters per... 304 5e-81 ref|YP_004752114.1| proline/glycine betaine ABC transporter perm... 279 2e-73 ref|YP_367240.1| ABC glycinebetaine/carnitine/choline transporte... 263 9e-69 ref|YP_002153522.1| putative binding-protein-dependent transport... 263 1e-68 ref|YP_001774193.1| binding-protein-dependent transport systems ... 261 5e-68 >ref|YP_003775136.1| proline/glycine betaine ABC transporters permease [Herbaspirillum seropedicae SmR1] gb|ADJ63228.1| ABC-type proline/glycine betaine transport systems, permease component protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 210/216 (97%), Positives = 215/216 (99%) Query: 1 MNIFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MNIFQYLQSDW NIL+LTLQHL+LVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV Sbjct: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 Query: 61 LTLPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP+FS+FGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI Sbjct: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAVIGAGGLGVLILHAISQSN 180 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAA+IGAGGLGVLILHAISQSN Sbjct: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK Sbjct: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 >ref|YP_004752114.1| proline/glycine betaine ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK61291.1| ABC-type proline/glycine betaine transport systems, permease component [Collimonas fungivorans Ter331] Length = 217 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 180/216 (83%), Positives = 199/216 (92%) Query: 1 MNIFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MN F YL S W IL LT+QHL LVGIAV LAI IGVPLGI+++R RWLA P+MGLAT+V Sbjct: 1 MNFFDYLLSAWPEILHLTIQHLMLVGIAVGLAILIGVPLGIVMIRHRWLASPMMGLATVV 60 Query: 61 LTLPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP+FS+FG G+GPLPAITAVFLYSLLPIMRNTYLAL+ I+ GIKEAGI Sbjct: 61 LTLPSIALFGLMIPLFSRFGQGLGPLPAITAVFLYSLLPIMRNTYLALDGIDHGIKEAGI 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAVIGAGGLGVLILHAISQSN 180 GIGMTFWQRLR+VDLPL+VPVILGGVRTAVVMNIGVMA+AA+IGAGGLGVLILHAISQSN Sbjct: 121 GIGMTFWQRLRLVDLPLSVPVILGGVRTAVVMNIGVMAVAAIIGAGGLGVLILHAISQSN 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 MQKLVVGAVMISVLAI+AD LLQ LQ++LTPKG+QK Sbjct: 181 MQKLVVGAVMISVLAIVADMLLQVLQRLLTPKGMQK 216 >ref|YP_367240.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] gb|ABB06596.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] Length = 217 Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats. Identities = 168/216 (77%), Positives = 186/216 (86%) Query: 1 MNIFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 M++F YL S W +L LTLQH+ LVGIAV AI GVPLGILI R WLAGPL+G+ATIV Sbjct: 1 MSVFDYLASSWPELLQLTLQHIWLVGIAVGCAIVAGVPLGILINRHDWLAGPLLGIATIV 60 Query: 61 LTLPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP FS+FG GIG PAITAVFLYSLLPIMRNTYLAL N++AGIKEAG Sbjct: 61 LTLPSIALFGLMIPFFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVDAGIKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAVIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+VDLPLAVPVIL GVRTAVVMNIGVM IAAV+GAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVDLPLAVPVILAGVRTAVVMNIGVMTIAAVVGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216 >ref|YP_002153522.1| putative binding-protein-dependent transport system protein [Burkholderia cenocepacia J2315] emb|CAR57062.1| putative binding-protein-dependent transport system component [Burkholderia cenocepacia J2315] Length = 217 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 168/216 (77%), Positives = 185/216 (85%) Query: 1 MNIFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MN+F YL S W +L LTLQH+ LV IAV AI GVPLGILI R WLAGPL+G+AT+V Sbjct: 1 MNVFDYLASSWPELLQLTLQHVWLVAIAVGCAIVAGVPLGILINRHDWLAGPLLGIATLV 60 Query: 61 LTLPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP FS+FG GIG PAITAVFLYSLLPIMRNTYLAL N++AGIKEAG Sbjct: 61 LTLPSIALFGLMIPFFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVDAGIKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAVIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+VDLPLAVPVIL GVRTAVVMNIGVM IAAVIGAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVDLPLAVPVILAGVRTAVVMNIGVMTIAAVIGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216 >ref|YP_001774193.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] gb|ACA95698.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] Length = 217 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 168/216 (77%), Positives = 186/216 (86%) Query: 1 MNIFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MN+F YL S W +L LTLQH+ LV IAV AI GVPLGILI R WLAGPL+G+AT+V Sbjct: 1 MNVFDYLASSWPELLQLTLQHVWLVAIAVGCAIVAGVPLGILINRHDWLAGPLLGIATLV 60 Query: 61 LTLPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP+FS+FG GIG PAITAVFLYSLLPIMRNTYLAL N+EAGIKEAG Sbjct: 61 LTLPSIALFGLMIPLFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVEAGIKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAVIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+V+LPLAVPVIL GVRTAVVMNIGVM IAAVIGAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVELPLAVPVILAGVRTAVVMNIGVMTIAAVIGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216