BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2082.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775135.1| proline/glycine betaine ABC transporter peri... 509 e-142 ref|YP_004752113.1| glycine betaine ABC transporter substrate-bi... 398 e-109 ref|YP_004022536.1| glycine betaine-binding protein [Burkholderi... 347 2e-93 ref|YP_552352.1| glycine betaine/choline/proline ABC transporter... 323 2e-86 ref|YP_296700.1| substrate-binding region of ABC-type glycine be... 316 4e-84 >ref|YP_003775135.1| proline/glycine betaine ABC transporter periplasmic substrate-binding protein [Herbaspirillum seropedicae SmR1] emb|CAM32580.1| ABC-type proline/glycine betaine transport system, periplasmic (osmoprotectant) binding component pr [Herbaspirillum seropedicae] gb|ADJ63227.1| ABC-type proline/glycine betaine transport system, periplasmic binding component protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 283/306 (92%), Positives = 293/306 (95%), Gaps = 2/306 (0%) Query: 1 MTKKTIAKYALCALALGLAMFGTARA--QAQNLVIGGKNFTEQLLLSDMTAQYLRAKGYD 58 MTKKTIA YALCALALGLA+ G A A QAQ+LVIGGKNFTEQLLLSDMTAQYLRAKGYD Sbjct: 1 MTKKTIATYALCALALGLALLGAAPARAQAQHLVIGGKNFTEQLLLSDMTAQYLRAKGYD 60 Query: 59 TDLKNGLGTTLMRSALESGQIDIVWDYTGTALIVYNHIEDKLDPDQIYQKVKELDAPRGL 118 T+LKNGLGTTLMRSALESGQ+DIVWDYTGTALIVYNHIEDKLDPDQIYQKVKELDAPRGL Sbjct: 61 TELKNGLGTTLMRSALESGQLDIVWDYTGTALIVYNHIEDKLDPDQIYQKVKELDAPRGL 120 Query: 119 TWLNQSELNNTYAFAMPRDVAEKYHIHSLQDLANRINEDDKEGNKQHLLGVDYEFASRPD 178 TWLNQSELNNTYAFAMPR +A+KY+IHSLQDLA RINEDDKEG + HL+GVDYEFASRPD Sbjct: 121 TWLNQSELNNTYAFAMPRALADKYNIHSLQDLAKRINEDDKEGGQPHLMGVDYEFASRPD 180 Query: 179 GLGPMQALYGFKLDRSEVKQMDPGLVYTALKNEQLFVGLTYASDGRIKGFDLQLLEDDKG 238 GLGPMQ LYGFKLDRSEVKQMDPGLVYTALKNEQLFVGLTYASDGRIKGFDLQLLEDDKG Sbjct: 181 GLGPMQQLYGFKLDRSEVKQMDPGLVYTALKNEQLFVGLTYASDGRIKGFDLQLLEDDKG 240 Query: 239 YFAAYKATPVVRQEILDKNPKLAEQLNALAAKIDTATMTELNKRVDIDQEPVAKVAADFL 298 YFAAYKATPVVRQEIL K+PKLAEQLN LAAKIDTATMTELNKRVDIDQEPVAKVAADFL Sbjct: 241 YFAAYKATPVVRQEILAKHPKLAEQLNELAAKIDTATMTELNKRVDIDQEPVAKVAADFL 300 Query: 299 KQAGLI 304 KQAGLI Sbjct: 301 KQAGLI 306 >ref|YP_004752113.1| glycine betaine ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK61290.1| Substrate-binding region of ABC-type glycine betaine transport system [Collimonas fungivorans Ter331] Length = 302 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 203/291 (69%), Positives = 248/291 (85%), Gaps = 1/291 (0%) Query: 14 LALGLAMFGTARAQAQNLVIGGKNFTEQLLLSDMTAQYLRAKGYDTDLKNGLGTTLMRSA 73 LA L++ GT A A +LV+GGKNFTEQL+LS MT QYLRAKGY DLKNGLGTT+MR A Sbjct: 10 LAFMLSLLGTTPASAADLVVGGKNFTEQLILSSMTQQYLRAKGYAVDLKNGLGTTIMRQA 69 Query: 74 LESGQIDIVWDYTGTALIVYNHIEDKLDPDQIYQKVKELDAPRGLTWLNQSELNNTYAFA 133 LESGQIDIVWDYTGTAL+VYN I++KLD DQ YQ+VKELDA R L WL SELNNTYA A Sbjct: 70 LESGQIDIVWDYTGTALVVYNKIDEKLDRDQSYQRVKELDASRKLIWLQPSELNNTYALA 129 Query: 134 MPRDVAEKYHIHSLQDLANRINE-DDKEGNKQHLLGVDYEFASRPDGLGPMQALYGFKLD 192 +P+ AE+ +++++DLAN+I + ++ +K++L+G+D+EFASRPDGL P+QALYGF LD Sbjct: 130 VPQQRAEEEGLNTIEDLANKIRQARQQDPDKKYLMGMDFEFASRPDGLEPLQALYGFSLD 189 Query: 193 RSEVKQMDPGLVYTALKNEQLFVGLTYASDGRIKGFDLQLLEDDKGYFAAYKATPVVRQE 252 RSEVKQMD GLVYTAL N+QL VGLTY+SDGR++GF+L+LLED+KG+FA Y A PVVR+E Sbjct: 190 RSEVKQMDAGLVYTALHNDQLNVGLTYSSDGRVQGFNLKLLEDNKGFFAFYSAVPVVRKE 249 Query: 253 ILDKNPKLAEQLNALAAKIDTATMTELNKRVDIDQEPVAKVAADFLKQAGL 303 ILD NPKLAEQLNAL+A+IDTA MTE+NK+VDIDQ P+A+VAADFL+ GL Sbjct: 250 ILDANPKLAEQLNALSARIDTAKMTEMNKKVDIDQLPIAQVAADFLRSEGL 300 >ref|YP_004022536.1| glycine betaine-binding protein [Burkholderia rhizoxinica HKI 454] emb|CBW77017.1| Glycine betaine-binding protein [Burkholderia rhizoxinica HKI 454] Length = 300 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 166/285 (58%), Positives = 222/285 (77%), Gaps = 2/285 (0%) Query: 19 AMFGTARAQAQNLVIGGKNFTEQLLLSDMTAQYLRAKGYDTDLKNGLGTTLMRSALESGQ 78 A+ G A A LV+GGKNFTEQLLL+++T+QYLR++GY + ++GLG+ LMRSALE+ Q Sbjct: 17 ALAGVIPAHAATLVVGGKNFTEQLLLAEITSQYLRSRGYTVESRSGLGSVLMRSALENRQ 76 Query: 79 IDIVWDYTGTALIVYNHIEDKLDPDQIYQKVKELDAPRGLTWLNQSELNNTYAFAMPRDV 138 +DIVWDYTGTALIVYN I +KLDP Y++V++LD PRGL WL S LNNTYA AMP + Sbjct: 77 LDIVWDYTGTALIVYNRIHEKLDPQTAYRRVRDLDKPRGLVWLKPSALNNTYALAMPSER 136 Query: 139 AEKYHIHSLQDLANRINEDDKEGNKQHLLGVDYEFASRPDGLGPMQALYGFKLDRSEVKQ 198 A++ IH++ LA +I +DD K+H +D EFA+RPDGL P+QALY +L RS++KQ Sbjct: 137 AKRDGIHTISQLAAKIQQDDPR--KRHWFAMDAEFANRPDGLRPLQALYDLRLRRSDIKQ 194 Query: 199 MDPGLVYTALKNEQLFVGLTYASDGRIKGFDLQLLEDDKGYFAAYKATPVVRQEILDKNP 258 MD GLVYTAL N Q GL Y +DGRIKGF + +L+DD G+F AY ATPVVR+++LD++P Sbjct: 195 MDSGLVYTALHNNQAMFGLVYTTDGRIKGFGITVLDDDLGFFPAYNATPVVRRDVLDQHP 254 Query: 259 KLAEQLNALAAKIDTATMTELNKRVDIDQEPVAKVAADFLKQAGL 303 +LA+QL+AL+A+I++ M+E+NKRVDID+E ++ VAADFL+ L Sbjct: 255 ELAKQLDALSAQINSEVMSEMNKRVDIDEESISAVAADFLRTHAL 299 >ref|YP_552352.1| glycine betaine/choline/proline ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE33002.1| ABC glycine betaine/choline/proline family transporter, periplasmic ligand binding protein [Burkholderia xenovorans LB400] Length = 298 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 157/286 (54%), Positives = 213/286 (74%), Gaps = 3/286 (1%) Query: 14 LALGLAMFGTARAQAQNLVIGGKNFTEQLLLSDMTAQYLRAKGYDTDLKNGLGTTLMRSA 73 +A G + +A A LV+GGKNFTEQ +L+++T+QYLRAKGY D + GLG+TL+RSA Sbjct: 11 IAAGALFCASLQAGAATLVLGGKNFTEQYVLTEITSQYLRAKGYTIDARTGLGSTLLRSA 70 Query: 74 LESGQIDIVWDYTGTALIVYNHIEDKLDPDQIYQKVKELDAPRGLTWLNQSELNNTYAFA 133 E+GQ+DI W+YTGTA IVYN I +KLDP +Y++VK LDA RGL WL+ S LNNTYA Sbjct: 71 QENGQVDITWEYTGTAAIVYNKITEKLDPKTMYERVKALDAKRGLVWLDCSPLNNTYALG 130 Query: 134 MPRDVAEKYHIHSLQDLANRINEDDKEGNKQHLLGVDYEFASRPDGLGPMQALYGFKLDR 193 +P+ VA++ I ++ LA ++ + K K+H+ +D EFA+RPDGL P++A YG + R Sbjct: 131 LPQQVAQQTGIRTISQLAAKMAAEPK---KKHVFAMDAEFANRPDGLKPLEAAYGMQFSR 187 Query: 194 SEVKQMDPGLVYTALKNEQLFVGLTYASDGRIKGFDLQLLEDDKGYFAAYKATPVVRQEI 253 E +QMDPGLVYTAL N Q+ +GL Y +DGR+KGF++ LEDD+ YF AY ATPVVR+ Sbjct: 188 EETRQMDPGLVYTALHNNQVPIGLIYTTDGRVKGFNIVPLEDDRHYFPAYNATPVVRKAT 247 Query: 254 LDKNPKLAEQLNALAAKIDTATMTELNKRVDIDQEPVAKVAADFLK 299 LD+NP+LA QLNAL+ ++ TM E+NK+VD+D PV +VAA+FL+ Sbjct: 248 LDQNPQLAPQLNALSDALNNDTMLEMNKQVDVDGRPVREVAAEFLR 293 >ref|YP_296700.1| substrate-binding region of ABC-type glycine betaine transport system [Ralstonia eutropha JMP134] gb|AAZ61856.1| Substrate-binding region of ABC-type glycine betaine transport system [Ralstonia eutropha JMP134] Length = 315 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 158/272 (58%), Positives = 205/272 (75%), Gaps = 2/272 (0%) Query: 33 IGGKNFTEQLLLSDMTAQYLRAKGYDTDLKNGLGTTLMRSALESGQIDIVWDYTGTALIV 92 +GGKNFTEQL+LS MT+QYLRAKG T+L +GLG+TLMR A+E+GQ+D+VWDYTGTALIV Sbjct: 46 VGGKNFTEQLILSSMTSQYLRAKGLGTELTSGLGSTLMRQAMENGQLDVVWDYTGTALIV 105 Query: 93 YNHIEDKLDPDQIYQKVKELDAPRGLTWLNQSELNNTYAFAMPRDVAEKYHIHSLQDLAN 152 +N +E+KLD Y +VK LDA RGL WL S +NNTYA AMP+ A+ + +L A Sbjct: 106 FNKVEEKLDAKASYARVKTLDAARGLVWLEPSRINNTYALAMPKQRAQASGVTTLSAYAE 165 Query: 153 RINEDDKEGNKQHLLGVDYEFASRPDGLGPMQALYGFKLDRSEVKQMDPGLVYTALKNEQ 212 ++ + ++ QH VD EFA+RPDGL P++A Y R +V Q+DPGLVYTALKN Q Sbjct: 166 KMRKAGEDA--QHPFAVDMEFAARPDGLEPLKAQYKLPFKRRDVIQLDPGLVYTALKNNQ 223 Query: 213 LFVGLTYASDGRIKGFDLQLLEDDKGYFAAYKATPVVRQEILDKNPKLAEQLNALAAKID 272 + +GL Y +DGR+KGF+L LLEDD +F Y A PVVR+ +LDK+P+LA L+AL+AK+D Sbjct: 224 VDMGLVYTTDGRVKGFELVLLEDDLHFFPDYSAVPVVRKAVLDKHPELATLLDALSAKLD 283 Query: 273 TATMTELNKRVDIDQEPVAKVAADFLKQAGLI 304 A+MTE+N +VDI Q+PV KVAADFL+ GLI Sbjct: 284 NASMTEMNYQVDIGQQPVDKVAADFLRSHGLI 315