BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2081.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775134.1| proline/glycine betaine ABC transporter perm... 370 e-101 ref|YP_004752112.1| ABC glycine betaine/choline/proline family t... 297 1e-78 ref|YP_004350198.1| Amino acid ABC transporter, permease protein... 256 3e-66 ref|YP_002909295.1| amino acid ABC transporter permease [Burkhol... 237 8e-61 ref|NP_252577.1| ABC transporter permease [Pseudomonas aeruginos... 230 1e-58 >ref|YP_003775134.1| proline/glycine betaine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63226.1| ABC-type proline/glycine betaine transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 228/237 (96%), Positives = 234/237 (98%) Query: 1 MTRVRHVFAGAFGFALVIAGLVWWIGPDVIQKYRGDLVYYTGKHLELVFSSMVLALATGI 60 MTRVRHVFAGA GFALV+AGLVWWIGPDVIQKYRGDL+YYTGKHLELVF+SM+LALATGI Sbjct: 1 MTRVRHVFAGALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI 60 Query: 61 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAAFGIGNGPTILALWLASLLPI 120 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALA FGIGNGPTILALWLASLLPI Sbjct: 61 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAFFGIGNGPTILALWLASLLPI 120 Query: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILFRVELPNALPIIVGGVRTSLAINVGTAPLS 180 VRNTYEGLKNVPAAMKEAARGIGMKPHQIL RVELPNALPIIVGGVRT+LAINVGTAPLS Sbjct: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180 Query: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTSLSGFYLARRGLRT 237 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVT+LSGFYLARRGLRT Sbjct: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT 237 >ref|YP_004752112.1| ABC glycine betaine/choline/proline family transporter, inner membrane subunit [Collimonas fungivorans Ter331] gb|AEK61289.1| ABC glycine betaine/choline/proline family transporter, inner membrane subunit [Collimonas fungivorans Ter331] Length = 276 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 176/233 (75%), Positives = 197/233 (84%) Query: 3 RVRHVFAGAFGFALVIAGLVWWIGPDVIQKYRGDLVYYTGKHLELVFSSMVLALATGIPA 62 R R+ GA LV+A + W IGP VI +Y+GDL+YYTG+HL LV SM LAL GIPA Sbjct: 42 RYRNAMIGAAVTLLVVAAIGWSIGPAVIHQYQGDLIYYTGRHLVLVGWSMSLALLCGIPA 101 Query: 63 GIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAAFGIGNGPTILALWLASLLPIVR 122 GI LSRP R AEK++QIFNIGNTIPS+AVLALALA FGIG+ P ILALWLASLLPIVR Sbjct: 102 GILLSRPYFSRHAEKWMQIFNIGNTIPSMAVLALALALFGIGDKPAILALWLASLLPIVR 161 Query: 123 NTYEGLKNVPAAMKEAARGIGMKPHQILFRVELPNALPIIVGGVRTSLAINVGTAPLSML 182 NTYEGLK V AMKEAA+GIGMKP Q+LFRVELPNALPIIVGGVRT+LAINVGTAPLS+L Sbjct: 162 NTYEGLKQVSPAMKEAAKGIGMKPLQVLFRVELPNALPIIVGGVRTALAINVGTAPLSIL 221 Query: 183 IGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTSLSGFYLARRGL 235 IGGESLGGLIFPGIYLNNHGQLLLGA ATA+LAL+LDA+V+ S YL++RGL Sbjct: 222 IGGESLGGLIFPGIYLNNHGQLLLGATATAVLALMLDAIVSLGSNAYLSKRGL 274 >ref|YP_004350198.1| Amino acid ABC transporter, permease protein [Burkholderia gladioli BSR3] gb|AEA64686.1| Amino acid ABC transporter, permease protein [Burkholderia gladioli BSR3] Length = 238 Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 153/235 (65%), Positives = 188/235 (80%), Gaps = 1/235 (0%) Query: 1 MTRVRHVFAGAFGFALVIAG-LVWWIGPDVIQKYRGDLVYYTGKHLELVFSSMVLALATG 59 MTR AG+ A+++ G + IG D +++ GDLVYYTG+HL LV SMVLA+A G Sbjct: 1 MTRRTVRLAGSLLLAVILFGWIASAIGADTWRQHSGDLVYYTGRHLMLVGCSMVLAIAVG 60 Query: 60 IPAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAAFGIGNGPTILALWLASLLP 119 IPAG+ALSRP R AE+F+Q+FNIGNT+PS+AVLA+AL FGIG+ P I+AL+LASLLP Sbjct: 61 IPAGVALSRPALARQAERFMQVFNIGNTVPSLAVLAIALGIFGIGDMPAIVALFLASLLP 120 Query: 120 IVRNTYEGLKNVPAAMKEAARGIGMKPHQILFRVELPNALPIIVGGVRTSLAINVGTAPL 179 I RN YEG++NVPA+++EAARGIGM P Q L RVELPNALPIIVGGVRT+LAINVGTAPL Sbjct: 121 ITRNAYEGMRNVPASLREAARGIGMTPWQSLTRVELPNALPIIVGGVRTALAINVGTAPL 180 Query: 180 SMLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTSLSGFYLARRG 234 + LIG +SLG LIFPGIYL+N LLLGAA+TA+LAL+LDA+V + S +AR G Sbjct: 181 AYLIGADSLGTLIFPGIYLDNQQMLLLGAASTAVLALLLDAIVAAGSRHVMARNG 235 >ref|YP_002909295.1| amino acid ABC transporter permease [Burkholderia glumae BGR1] gb|ACR32060.1| amino acid ABC transporter permease [Burkholderia glumae BGR1] Length = 238 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 154/235 (65%), Positives = 185/235 (78%), Gaps = 1/235 (0%) Query: 1 MTRVRHVFAGAFGFALVIAG-LVWWIGPDVIQKYRGDLVYYTGKHLELVFSSMVLALATG 59 MTR AG+ A+++ G + IG D ++Y GDLVYYTG+HL LV SM LA+ G Sbjct: 1 MTRRTVRIAGSLLLAIIVLGWIAQAIGADTWRQYSGDLVYYTGRHLMLVGYSMALAILVG 60 Query: 60 IPAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAAFGIGNGPTILALWLASLLP 119 IPAG+ALSRP A R AE+F+Q+FNIGNT+PS+AVLA+AL FGIG P I+AL+LASLLP Sbjct: 61 IPAGVALSRPSAARHAERFMQVFNIGNTVPSLAVLAIALGIFGIGEAPAIVALFLASLLP 120 Query: 120 IVRNTYEGLKNVPAAMKEAARGIGMKPHQILFRVELPNALPIIVGGVRTSLAINVGTAPL 179 I RN YEG++NVPAA++EAARGIGM P Q L RVELPNALPII+GGVRT+LAINVGTAPL Sbjct: 121 ITRNAYEGMRNVPAALREAARGIGMTPWQSLVRVELPNALPIIIGGVRTALAINVGTAPL 180 Query: 180 SMLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTSLSGFYLARRG 234 + LIG +SLG LIFPGIYL+N LLLGAAATA+LAL+LD +V + S LAR G Sbjct: 181 AYLIGADSLGTLIFPGIYLDNQQMLLLGAAATAVLALLLDGIVAAGSRHVLARNG 235 >ref|NP_252577.1| ABC transporter permease [Pseudomonas aeruginosa PAO1] ref|ZP_01367322.1| hypothetical protein PaerPA_01004474 [Pseudomonas aeruginosa PACS2] ref|YP_789232.1| ABC transporter permease [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002438695.1| putative permease of ABC transporter [Pseudomonas aeruginosa LESB58] ref|ZP_04930110.1| hypothetical protein PACG_02800 [Pseudomonas aeruginosa C3719] ref|ZP_04935902.1| hypothetical protein PA2G_03334 [Pseudomonas aeruginosa 2192] ref|ZP_06877068.1| putative permease of ABC transporter [Pseudomonas aeruginosa PAb1] ref|ZP_07795277.1| putative permease component of an ABC-type transpo [Pseudomonas aeruginosa 39016] gb|AAG07275.1|AE004806_2 probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] gb|ABJ13161.1| putative permease component of an ABC-type transpo [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ54229.1| hypothetical protein PACG_02800 [Pseudomonas aeruginosa C3719] gb|EAZ60021.1| hypothetical protein PA2G_03334 [Pseudomonas aeruginosa 2192] emb|CAW25816.1| probable permease of ABC transporter [Pseudomonas aeruginosa LESB58] gb|EFQ40373.1| putative permease component of an ABC-type transpo [Pseudomonas aeruginosa 39016] gb|EGM13872.1| putative permease of ABC transporter [Pseudomonas aeruginosa 152504] gb|EGM14344.1| putative permease of ABC transporter [Pseudomonas aeruginosa 138244] dbj|GAA15568.1| probable permease of ABC transporter [Pseudomonas aeruginosa NCMG1179] gb|AEO73540.1| putative permease of ABC transporter [Pseudomonas aeruginosa M18] dbj|BAK91899.1| ABC transporter permease [Pseudomonas aeruginosa NCGM2.S1] Length = 240 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 147/211 (69%), Positives = 169/211 (80%) Query: 22 VWWIGPDVIQKYRGDLVYYTGKHLELVFSSMVLALATGIPAGIALSRPGAQRSAEKFIQI 81 + WI P I YR DL++Y HL LVFSSM AL G+PAGI LSRPG Q AE+ +Q+ Sbjct: 23 IHWITPATILHYREDLLFYLQAHLVLVFSSMAAALLVGVPAGILLSRPGMQAQAERLMQV 82 Query: 82 FNIGNTIPSIAVLALALAAFGIGNGPTILALWLASLLPIVRNTYEGLKNVPAAMKEAARG 141 FN+GNTIP +AVLA+ALA GIGNGP ILAL+LASLLPIVRNTYEGL+NV A+KEAA G Sbjct: 83 FNVGNTIPPLAVLAIALAIIGIGNGPAILALFLASLLPIVRNTYEGLRNVSPALKEAATG 142 Query: 142 IGMKPHQILFRVELPNALPIIVGGVRTSLAINVGTAPLSMLIGGESLGGLIFPGIYLNNH 201 IGM P+Q+L RVELPNA+PIIVGGVR +LA+NVG+APL+ LIG SLG LIFPGIYLNNH Sbjct: 143 IGMTPNQVLLRVELPNAVPIIVGGVRVALALNVGSAPLAFLIGANSLGSLIFPGIYLNNH 202 Query: 202 GQLLLGAAATALLALVLDALVTSLSGFYLAR 232 QLLLGAA TALLAL+LDALV S +L R Sbjct: 203 QQLLLGAACTALLALLLDALVVLFSRMFLER 233