BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2079.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774034.1| small protein A [Herbaspirillum seropedicae ... 265 2e-69 ref|YP_004754502.1| hypothetical protein CFU_3855 [Collimonas fu... 171 3e-41 ref|YP_001100899.1| hypothetical protein HEAR2656 [Herminiimonas... 156 1e-36 ref|YP_001354581.1| hypothetical protein mma_2890 [Janthinobacte... 150 1e-34 ref|ZP_08272881.1| SmpA/OmlA domain protein [Oxalobacteraceae ba... 135 4e-30 >ref|YP_003774034.1| small protein A [Herbaspirillum seropedicae SmR1] gb|ADJ62126.1| small protein A (tmRNA-binding) protein [Herbaspirillum seropedicae SmR1] Length = 181 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 153/185 (82%), Positives = 168/185 (90%), Gaps = 6/185 (3%) Query: 1 MRMLSRMKSRHHTTAIGVLAALAVSLAGCSSTKAPEQAAPTDTSGVKVTGKSNSLFGFFK 60 M MLSR+KSRHH+ AIG+ A LA+SLAGCSSTKAP+QAA D GVKV+GKSNSLFGF + Sbjct: 1 MLMLSRLKSRHHSAAIGLAALLALSLAGCSSTKAPDQAA-ADAQGVKVSGKSNSLFGFLR 59 Query: 61 PYRIDIQQGNFVSKEMVAQLRPGLTRDQVRFVLGTPLLTDMFHSNRWDYDFRLAKGNGEI 120 PYRIDIQQGNFVS+EMVAQLRPGLTRDQVRFVLGTPLLTDMFH+NRWDYDFRLAKGNGEI Sbjct: 60 PYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNGEI 119 Query: 121 MTSRVSVFFKDDLLDHVEGGQNLPTESEYLTLITDAKVGSKAGFSDKPKDDSEIKPASPV 180 MTSRV+VFFKDDLLDHV+GGQ+LPTESEYLTLITDAKVGSKA + D ++KPASPV Sbjct: 120 MTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKLT-----DDDVKPASPV 174 Query: 181 APSSA 185 APSSA Sbjct: 175 APSSA 179 >ref|YP_004754502.1| hypothetical protein CFU_3855 [Collimonas fungivorans Ter331] gb|AEK63679.1| hypothetical protein CFU_3855 [Collimonas fungivorans Ter331] Length = 192 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 101/199 (50%), Positives = 125/199 (62%), Gaps = 19/199 (9%) Query: 1 MRML-SRMKSRHHTTAIGVLAALAVSLAGCSSTKAPE---------QAAP--TDTSGVKV 48 MRML S +++ + SLAGC+S P AAP TDTSGV+ Sbjct: 1 MRMLLSPVRTSARIVPLAAAVLFMASLAGCASKNPPAGQSVAGADPAAAPVATDTSGVQ- 59 Query: 49 TGKSNSLFGFFKPYRIDIQQGNFVSKEMVAQLRPGLTRDQVRFVLGTPLLTDMFHSNRWD 108 T K G F PYRIDIQQGNFVSKEM+AQ++ G+TR+QVRF LGTPLLTD+FH +RWD Sbjct: 60 TIKHRRFLGIFSPYRIDIQQGNFVSKEMLAQVKEGMTREQVRFALGTPLLTDLFHDDRWD 119 Query: 109 YDFRLAKGNGEIMTSRVSVFFKDDLLDHVEGGQNLPTESEYLTLITDAKVGSKAGFSDKP 168 Y FRL KGNGE+ TSRVSVFF +LL V+GG NLPTE++YL ++ A + K Sbjct: 120 YVFRLQKGNGEVTTSRVSVFFNGNLLARVDGG-NLPTENDYLD-----RISGGASEAKKS 173 Query: 169 KDDSEIKPASPVAPSSATN 187 + EI P+ P AP + N Sbjct: 174 VKNVEIAPSVPSAPGPSKN 192 >ref|YP_001100899.1| hypothetical protein HEAR2656 [Herminiimonas arsenicoxydans] emb|CAL62778.1| Hypothetical protein, putative SmpA/OmlA domain [Herminiimonas arsenicoxydans] Length = 216 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 78/120 (65%), Positives = 94/120 (78%), Gaps = 3/120 (2%) Query: 38 AAPTDTSGVK--VTGKSNSLFGFFKPYRIDIQQGNFVSKEMVAQLRPGLTRDQVRFVLGT 95 AAP TSG T ++N G F+PYR DIQQGNFVS+EMVAQL+ G+T+DQV F+LGT Sbjct: 91 AAPVATSGATGVQTKQANRFLGIFRPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGT 150 Query: 96 PLLTDMFHSNRWDYDFRLAKGNGEIMTSRVSVFFKDDLLDHVEGGQNLPTESEYLTLITD 155 PLL D+FH++RWDY FRL KGNGEI TSRV+VFFKD L+ H EGG +LPTE +YL I+D Sbjct: 151 PLLNDLFHADRWDYAFRLQKGNGEITTSRVTVFFKDKLVSHFEGG-DLPTEKDYLDRISD 209 >ref|YP_001354581.1| hypothetical protein mma_2890 [Janthinobacterium sp. Marseille] gb|ABR90487.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 253 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 74/119 (62%), Positives = 90/119 (75%), Gaps = 2/119 (1%) Query: 44 SGVKVTGKSNSLFGFFKPYRIDIQQGNFVSKEMVAQLRPGLTRDQVRFVLGTPLLTDMFH 103 SGV+V + G F PYR DIQQGNFVS+EMVAQL+ G+T+DQV F+LGTPLLTD+FH Sbjct: 136 SGVQVK-REKRFLGIFSPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLLTDVFH 194 Query: 104 SNRWDYDFRLAKGNGEIMTSRVSVFFKDDLLDHVEGGQNLPTESEYLTLITD-AKVGSK 161 +RWDY FR+ KGNGEI +SRV+V FKD L+ EGG +LPTE +YL I D AK +K Sbjct: 195 GDRWDYAFRMQKGNGEITSSRVTVHFKDKLVSSFEGGGDLPTEKDYLARIADKAKAANK 253 >ref|ZP_08272881.1| SmpA/OmlA domain protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33645.1| SmpA/OmlA domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 182 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 67/131 (51%), Positives = 87/131 (66%), Gaps = 11/131 (8%) Query: 55 LFGFFKPYRIDIQQGNFVSKEMVAQLRPGLTRDQVRFVLGTPLLTDMFHSNRWDYDFRLA 114 G PYRIDI QGNF+S+EMV QL+ G+T DQVRF LGTPL+ D+FH++RWDY FR+ Sbjct: 59 FLGVLSPYRIDIPQGNFISEEMVQQLKEGMTPDQVRFALGTPLIIDIFHADRWDYVFRML 118 Query: 115 KGNGEIMTSRVSVFFKDDLLDHVEGGQNLPTESEYLTLITDAKVGSKAGFSDKPKDDSEI 174 K N E+++SRV+V+FKD + EGG NLPTE +YL ++ P+ + Sbjct: 119 KRNDEVLSSRVTVYFKDGRVSRFEGG-NLPTEVDYLEMLAGG----------VPQKVKPL 167 Query: 175 KPASPVAPSSA 185 P PVAPSSA Sbjct: 168 APTVPVAPSSA 178