BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2076.p (920 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_973764.1| UvrD/REP helicase [Polaromonas naphthalenivoran... 897 0.0 ref|YP_002912194.1| UvrD/REP helicase [Burkholderia glumae BGR1]... 674 0.0 ref|YP_004852712.1| Superfamily I DNA and RNA helicase [Xanthomo... 673 0.0 ref|YP_004793088.1| UvrD/REP helicase [Burkholderia sp. JV3] >gi... 662 0.0 ref|ZP_05134487.1| UvrD/REP helicase [Stenotrophomonas sp. SKA14... 662 0.0 >ref|YP_973764.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gb|ABM40022.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] Length = 914 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 453/910 (49%), Positives = 593/910 (65%), Gaps = 50/910 (5%) Query: 6 FEDAKFTAGLFWTQIEIANSDAETFILDGIPNLRAKKLKIALGKTIAAIQHATKIKWLIE 65 E G FWT + + + + LDGIPN A L+ L TI I+H +++ L++ Sbjct: 45 LESLAIEPGTFWTALHFPSKNGKRQSLDGIPNEEAASLRQTLFSTIEQIRHRERVQALLK 104 Query: 66 NLEEQIEPIKSWVSSFRSAISAQLKQHGWLTTEFAKVNEALKPNSLGNLLDAPEIKDYLS 125 + P+ +W A QL++ GWLT EF + KP L L PE+ +++ Sbjct: 105 DFNTVTAPVLTWAKQAVQAAKDQLQKKGWLTHEFVQRQNEGKPTGLSKYLSTPEVANHVE 164 Query: 126 THSEIIRTHGLETWRKPVSQVVAEFNEAHLRSQLDAFKDFFGKRGFLILYGIEKAPLTPE 185 S L+ W+ S NE HL +L K+FF +EK+PLT E Sbjct: 165 KQSAQFHAD-LKFWKHDFSIFAKGVNERHLAKELIGSKEFFDS--------VEKSPLTDE 215 Query: 186 QREAVICFDNRVLLVACAGSGKTSTMVAKVGYALLNRYLHPDHILLLAFNADAAAELRDR 245 Q +AV+CFDNRVLLVA AGSGKTSTMVAK GYAL Y D +LLLAFN DAAAELR R Sbjct: 216 QAKAVVCFDNRVLLVASAGSGKTSTMVAKAGYALKMGYCEADRMLLLAFNNDAAAELRQR 275 Query: 246 LERCLGPFAVDVKSVKARTFHSFGLEVIGQATGKKPRLAWWLESARSDLEKLMSIVDTLK 305 ++ LGP + V A+TFH+FGL+VIG ATGK+P LA W+E+ + DLE+LM+IVD LK Sbjct: 276 IQDRLGPLGLPADKVVAKTFHAFGLDVIGLATGKRPSLAPWVENGK-DLEQLMAIVDDLK 334 Query: 306 DKDQVFRTQWDMFRIVLAQDMPEFGKDEEVAESWDHVNGRPSFWTKNNEQVKSYGELLIA 365 D+D FR WD+FR+VL QD+P+FGK+ + +SWD + + F T NNE VKS GE LIA Sbjct: 335 DRDTGFRISWDLFRVVLGQDLPKFGKEAQAPDSWDRNSKKEGFRTLNNEVVKSRGEQLIA 394 Query: 366 DWLFYNGVKYQYEAPYEHNVADAHHGQYRPDFYFPDIDAYLEHWGVDQDGNPPESFKGYK 425 +W FYNGV+Y YE YE + ADAHH QY PDFY PD AYLEHW +D +G P F GY+ Sbjct: 395 NWFFYNGVRYVYEGAYEVDTADAHHRQYYPDFYLPDAKAYLEHWALDANGQAPPDFVGYQ 454 Query: 426 ESMEWKRRTHKEHETVLLETTTAGLADGQIFTYLTSELTRLGIRLDPNPDRPVKGRKPIE 485 E MEWK++ H + T LLETT A L G+ F YL ++L +LG+ L+PNPDRPV GRK IE Sbjct: 455 EGMEWKKQVHAANGTKLLETTVAQLWSGKAFEYLQTQLQQLGVTLEPNPDRPVPGRKAIE 514 Query: 486 NARLARTIRSFITHAKSNRLNVLGIRQRLDNEQHGQFKFRHRLFLNLIDEIWKAWETELR 545 N RLA+T RSFITHAKSNRL++ +++RL++ G FKFRH +FL L+++IW WE +L Sbjct: 515 NPRLAKTFRSFITHAKSNRLDLGDLKKRLESGVAGDFKFRHTMFLGLLEKIWTQWEAQLT 574 Query: 546 SSQSIDFEDMLNQATDLIESGKWKSPYGLVMVDEFQDASYARAKLLAGLVKESGKHLFAV 605 + IDF+DMLN ATD +E GKWKSPY LVMVDEFQDAS ARA+L+AGLV K LFAV Sbjct: 575 KDKCIDFDDMLNLATDCVEQGKWKSPYELVMVDEFQDASQARARLVAGLVSGPDKCLFAV 634 Query: 606 GDDWQSINRFAGADISVMTNFQDGFGEHVTLKLEKTFRCVRSICDVSSAFVMKNPKQLRK 665 GDDWQSINRFAGAD++VMT+F+ +G VTLKLE TFRC +S+CD+SSAFV KNPKQLRK Sbjct: 635 GDDWQSINRFAGADLAVMTDFERRYGSAVTLKLETTFRCPQSLCDISSAFVQKNPKQLRK 694 Query: 666 LVTSIHDSADASRREANEAIAKLFSVVSSISEGIDHQQQKLAAATDNSDSAISIICADKE 725 V S + N + II D E Sbjct: 695 AVRS---------------------------------------SKPNLAEPVLIIRVDDE 715 Query: 726 HQIRDVIAIQLKRIADEYRAERTRPTVYVLGRYQKDRQFVPLDHFGLDVEFVTMHSSKGL 785 QIR + ++L I+ E +P V +LGRYQKD+ ++P + L+++F+T+HSSKGL Sbjct: 716 RQIRAAVQMRLGEISRENATVGRKPKVLMLGRYQKDKAYLPYANDALELDFITVHSSKGL 775 Query: 786 EADHVFIPKMTSDILGFPSRVADDPVLRLAMPGGDDYPFAEERRLFYVALTRARKTVTLV 845 EADH+ +P+MTS+ +GFPS++ADDPVL LAMPGGD + AEERRLFYVALTRAR TVTL+ Sbjct: 776 EADHIILPRMTSETMGFPSQIADDPVLLLAMPGGDAFENAEERRLFYVALTRARATVTLI 835 Query: 846 TVSGKESLFITEMMKEYKVPLLNREGQLANASEICPKCKIGLLSKWTGKYGPFIGCTRFP 905 T++ KES F+ E+++E+++ + +G +++E+C C G + GKYG F+GC+ +P Sbjct: 836 TITLKESAFVKELVREHQITVRMADGT-ESSNELCSVCGDGFVVPKNGKYGAFLGCSNYP 894 Query: 906 RCDFRRSYSE 915 RC R+ + Sbjct: 895 RCRHTRNIEQ 904 >ref|YP_002912194.1| UvrD/REP helicase [Burkholderia glumae BGR1] gb|ACR29490.1| UvrD/REP helicase [Burkholderia glumae BGR1] Length = 945 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 381/914 (41%), Positives = 527/914 (57%), Gaps = 71/914 (7%) Query: 14 GLFWTQIEIANSDAETFILDGIPNLRAKKLKIALGKTIAAIQHATKIKWLIENLEEQIEP 73 G+FWT + + + + +DG+PN R L A+ + Q I+ + + + + Sbjct: 53 GVFWTDVTLHPNPSRFVKVDGLPNARGTDLTSAVEAALVEKQ----IRQDVAFVRDAHQT 108 Query: 74 IKSWVSSFRSAISAQLKQHGWLTTEFAKVNEALKPNSLGNLLDAPEIKDYLSTHSEIIR- 132 + W+ A W+T E EA +P+ +D ++ ++ + R Sbjct: 109 VLDWLDHKTQQEQAAEAGRRWITHEVQAAIEAARPS-----IDVKAVRARMTKANVNARL 163 Query: 133 -------THGLETWRKPVSQVVAEFNEAHLRSQLDAFKDFFGKRGFLILYGIEKAPLTPE 185 L W A N AH +L A KD F + +E+ PLT E Sbjct: 164 GKDAADVERSLVQWETDHRPYWASLNVAHTERELKACKDLFDR--------VERKPLTEE 215 Query: 186 QREAVICFDNRVLLVACAGSGKTSTMVAKVGYALLNRYLHPDHILLLAFNADAAAELRDR 245 Q AVICFDNRV +VA AGSGKTSTMVAK YA+ ++ P I++LAFN AA EL DR Sbjct: 216 QARAVICFDNRVQVVASAGSGKTSTMVAKAAYAIDRGFVAPKRIVMLAFNKQAADELADR 275 Query: 246 LERCLGPFAVDVKSVKARTFHSFGLEVIGQATGKKPRLAWWLESARSDLEKLMSIVDTLK 305 + A+ +V+A TFH+ GL +IG+AT +KP + W + KL +IVD LK Sbjct: 276 AAKSFERLAMSNVAVEASTFHALGLRIIGKATKEKPDVPDWATDTAGGISKLTAIVDQLK 335 Query: 306 DKDQVFRTQWDMFRIVLAQDMPEFGKDEEVAESWD-HVNGRPSFWTKNNEQVKSYGELLI 364 D+ FRTQWD+FR V +D+P FG + + WD NGR T + ++V+S E + Sbjct: 336 DRSATFRTQWDLFRFVFGKDLPAFGSNGS-PDVWDDQGNGRT--LTADGKRVRSQEEATL 392 Query: 365 ADWLFYNGVKYQYEAPYEHNVADAHHGQYRPDFYFPDIDAYLEHWGVDQDGNPPESFKGY 424 ++WLFYNGV Y YE Y+ AD H QYRPDFY+P ID Y EH+ +D +G P F Y Sbjct: 393 SNWLFYNGVDYLYEERYKFKTADEDHRQYRPDFYYPGIDLYHEHFALDANGKAPPHFTDY 452 Query: 425 KESMEWKRRTHKEHETVLLETTTAGLADGQIFTYLTSELTRLGIRLDPNPDR--PVKGRK 482 +EWKR H+E T L+ETT+ + G +F +L +ELTR GI+LDPNPDR P G+K Sbjct: 453 VAGVEWKRTLHRERGTALIETTSHQVRTGDVFKHLANELTRRGIQLDPNPDREIPSGGQK 512 Query: 483 PIENARLARTIRSFITHAKSNRLNVLGIRQRLDNEQHGQFKFRHRLFLNLIDEIWKAWET 542 P+E L +R+FI+HAKSN L +RQRLD FK+R+R+FL++ + I KAW+ Sbjct: 513 PMEPEELVNLLRTFISHAKSNCLTAAALRQRLDALPDDAFKYRYRMFLDIAEPIIKAWDA 572 Query: 543 ELRSSQSIDFEDMLNQATDLIESGKWKSPYGLVMVDEFQDASYARAKLLAGLVKESGKHL 602 L + IDFEDMLN A + +ESG++++PY LVM DEFQDAS ARA+L LV++ G++L Sbjct: 573 ALAAEDGIDFEDMLNLAAEHLESGRYEAPYELVMADEFQDASRARARLCRALVQKPGRYL 632 Query: 603 FAVGDDWQSINRFAGADISVMTNFQDGFGEHVTLKLEKTFRCVRSICDVSSAFVMKNPKQ 662 FAVGDDWQSINRFAGAD+SVMT F++ FG LKLE+TFRC +++CDVSS FV KNP Q Sbjct: 633 FAVGDDWQSINRFAGADVSVMTGFREWFGHGQVLKLEQTFRCPQALCDVSSRFVSKNPTQ 692 Query: 663 LRKLVTSIHDSADASRREANEAIAKLFSVVSSISEGIDHQQQKLAAATDNSDSAISIICA 722 + K VTS+ A + + F V ++KLA A D ++ Sbjct: 693 ISKRVTSV--------APAIGPVLQAFQV---------DNKEKLADAIDQFVMKLA---- 731 Query: 723 DKEHQIRDVIAIQLKRIADEYRAERTRPTVYVLGRYQKDRQFVPLDHFG----LDVEFVT 778 H ++D + +V+VLGRY DRQ+VP + +DV F+T Sbjct: 732 ---HGVQD---------GSIPPGHDGKVSVFVLGRYNADRQYVPANKARFERWVDVSFLT 779 Query: 779 MHSSKGLEADHVFIPKMTSDILG--FPSRVADDPVLRLAMPGGDDYPFAEERRLFYVALT 836 +H SKG EAD+V +P+M S + G FP+ ADDPVL LAMP GD+YP EERRLFYVALT Sbjct: 780 VHRSKGSEADYVILPEMLSVMRGRSFPNTRADDPVLALAMPAGDNYPDGEERRLFYVALT 839 Query: 837 RARKTVTLVTVSGKESLFITEMMKEYKVPLLNREGQLANASEICPKCKIGLLSKWTGKYG 896 RAR++V + T G+ S F+ E+ ++ V + + +GQ+ E CP C+ G+L G YG Sbjct: 840 RARRSVAMFTARGQRSSFLRELEQDGAVSITDTDGQVVQEEE-CPSCRRGVLVLRNGPYG 898 Query: 897 PFIGCTRFPRCDFR 910 F C+ FP C ++ Sbjct: 899 EFRSCSNFPACKYK 912 >ref|YP_004852712.1| Superfamily I DNA and RNA helicase [Xanthomonas axonopodis pv. citrumelo F1] gb|AEO43414.1| Superfamily I DNA and RNA helicase [Xanthomonas axonopodis pv. citrumelo F1] Length = 940 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 388/919 (42%), Positives = 514/919 (55%), Gaps = 73/919 (7%) Query: 10 KFTAGLFWTQIEIANSDAETFILDGIPNLRAKKLKIALGKTIAAIQHATKIKWLIENLEE 69 + AG FWT I + + DG+PN + L AL + +++ + L+ Sbjct: 19 RVNAGTFWTDITLHPGQSREVKADGLPNSQGAALVQALSVALTE----KRLREDVAFLKG 74 Query: 70 QIEPIKSWVSSFRSAISAQLKQHGWLTTE----FAKVNEALKPNSLGNLLDAPEIKDYLS 125 + I +W+ A L+Q W T E + P +L L P + L Sbjct: 75 EQRTIDTWLDHKAEQERACLEQRRWFTHEQQADVLAARAQVDPAALRARLKKPGVAARLG 134 Query: 126 THSEIIRTHGLETWRKPVSQVVAEFNEAHLRSQLDAFKDFFGKRGFLILYGIEKAPLTPE 185 ++ I L W A N AH+ +L A KD + +E PLTPE Sbjct: 135 PAAQAIE-RSLAAWEDDHRSAWAALNAAHVERELVASKDLMDR--------VESKPLTPE 185 Query: 186 QREAVICFDNRVLLVACAGSGKTSTMVAKVGYALLNRYLHPDHILLLAFNADAAAELRDR 245 Q AV+CFDNRV +VA AGSGKTSTMVAK YA+ ++ P I+LLAFN AA EL++R Sbjct: 186 QARAVLCFDNRVQVVASAGSGKTSTMVAKAAYAIHRGFVDPKRIVLLAFNKQAAEELKER 245 Query: 246 LERCLGPFAVDVKSVKARTFHSFGLEVIGQATGKKPRLAWWLESARSDLEKLMSIVDTLK 305 + +V+A TFH+ GL +IG+ATG+KP + W A S + KL IVD LK Sbjct: 246 AALAFDRSGMAEVTVEASTFHALGLRLIGKATGEKPDIPDWATDAASGVRKLTQIVDQLK 305 Query: 306 DKDQVFRTQWDMFRIVLAQDMPEFGKDEEVAESWDHVNGRPSFWTKNNEQVKSYGELLIA 365 D+ FR QWD+FR V +D+P FG E AE WD G+ S T E+VKS E+LIA Sbjct: 306 DRSSAFRRQWDLFRFVFGKDLPAFGA-PEAAEVWD-AQGKGSLVTSRGERVKSMEEVLIA 363 Query: 366 DWLFYNGVKYQYEAPYEHNVADAHHGQYRPDFYFPDIDAYLEHWGVDQDGNPPESFKGYK 425 + LF NGV Y+YEAPY H AD H QY+PDFY+PD+D + EH+ +D DG PP F+GY Sbjct: 364 NLLFLNGVDYRYEAPYPHRTADETHRQYKPDFYYPDLDLFHEHFALDADGMPPTHFEGYL 423 Query: 426 ESMEWKRRTHKEHETVLLETTTAGLADGQIFTYLTSELTRLGIRLDPNPDR--PVKGRKP 483 + + WKR+ H + T L ETT+ GL G L ELT G+ LDPNPDR P +G+KP Sbjct: 424 DGVIWKRQLHADKGTALFETTSHGLRHGNDLDQLERELTSRGLVLDPNPDRGIPPEGQKP 483 Query: 484 IENARLARTIRSFITHAKSNRLNVLGIRQRLDNEQHGQFKFRHRLFLNLIDEIWKAWETE 543 +E L +R+F++HAKSN L+ L +++RLD FK RH++FL++ + AW+ Sbjct: 484 MEPVELIGLVRTFMSHAKSNGLSALDLQRRLDAMPADTFKLRHQMFLDIAVPVMAAWDQA 543 Query: 544 LRSSQSIDFEDMLNQATDLIESGKWKSPYGLVMVDEFQDASYARAKLLAGLVKESGKHLF 603 L + IDFEDMLN A +ESG SPY LVM DEFQDAS ARA+L LV++ G+ F Sbjct: 544 LAAEDGIDFEDMLNLAAAHLESGLVASPYDLVMADEFQDASRARARLCRALVQDKGRFFF 603 Query: 604 AVGDDWQSINRFAGADISVMTNFQDGFGEHVTLKLEKTFRCVRSICDVSSAFVMKNPKQL 663 AVGDDWQSINRFAGAD+SVMT F+ FG LKLE+TFRC +++CDVSSAFV KNP Q+ Sbjct: 604 AVGDDWQSINRFAGADVSVMTGFRQWFGHGQVLKLEQTFRCPQALCDVSSAFVSKNPGQI 663 Query: 664 RKLVTSIHDSADASRREANEAIAKLFSVVSSISEGIDHQQQKLAAATDNSDSAISIICAD 723 K V S T + + D Sbjct: 664 AKRVHS---------------------------------------PTPAQGPVLQALQVD 684 Query: 724 KEHQIRDVIAIQLKRIADEYRAERTRP------TVYVLGRYQKDRQFVPL--DHFG--LD 773 + Q+ D I + +A+ R P +VYVLGRY DRQ+VP+ + F +D Sbjct: 685 SKDQLADAIDRFVVTLAEGVRDGTIPPGRNGKVSVYVLGRYNTDRQYVPIRQNRFNRWVD 744 Query: 774 VEFVTMHSSKGLEADHVFIPKMTSDI--LGFPSRVADDPVLRLAMPGGDDYPFAEERRLF 831 V F+T+H SKG EAD+V +P+M S FP+ ADDPVL LAMP GD +P EERRLF Sbjct: 745 VSFLTIHRSKGSEADYVILPEMISAPRRRSFPNTRADDPVLALAMPEGDTFPLGEERRLF 804 Query: 832 YVALTRARKTVTLVTVSGKESLFITEMMKEYKVPLLNREGQLANASEICPKCKIGLLSKW 891 YVALTRAR+ V + T+ G+ S F+ E+ + V + + +GQ A CP CK G+L Sbjct: 805 YVALTRARRCVAMFTIRGQCSTFLRELEDDRAVVITDTDGQ-AIKEAPCPACKQGVLVLR 863 Query: 892 TGKYGPFIGCTRFPRCDFR 910 TG YG F C+ FP C ++ Sbjct: 864 TGPYGEFRSCSNFPACKYK 882 >ref|YP_004793088.1| UvrD/REP helicase [Burkholderia sp. JV3] gb|AEM51862.1| UvrD/REP helicase [Burkholderia sp. JV3] Length = 917 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 388/914 (42%), Positives = 512/914 (56%), Gaps = 77/914 (8%) Query: 14 GLFWTQIEIANSDAETFILDGIPNLRAKKLKIALGKTIAAIQHATKIKWLIENLEEQIEP 73 GLFW+++E+ A +DG+ N +A +L AL + + + K L + + +QI+ Sbjct: 51 GLFWSRVELQTGSAARLSVDGLANAQASRLAAAL-QEVRFARTTRGRKALFDTILQQIQ- 108 Query: 74 IKSWVSSFRSAISAQLKQHGWLTTEFAKVNEA------LKPNSLGNLLDAPEIKDYLSTH 127 +W+S+ + I W+T E + A L+P L L + L +H Sbjct: 109 --AWLSAADALIDRGSAGRRWITHEQQQALLAERSSLPLQPAELEQLFLDGSVHGDLHSH 166 Query: 128 SEIIRTHGLETWRKPVSQVVAEFNEAHLRSQLDAFKDFFGKRGFLILYGIEKAPLTPEQR 187 S L W+ AE N + KDF + +E PLT EQ Sbjct: 167 SHRAALDALHDWQLDWPAAWAEANATMATRERVLAKDFLDR--------VESRPLTEEQA 218 Query: 188 EAVICFDNRVLLVACAGSGKTSTMVAKVGYALLNRYLHPDHILLLAFNADAAAELRDRLE 247 AVICFDNRV +VA AGSGKTSTMVAK YA+ ++ P+ I++LAFN DAA EL R + Sbjct: 219 RAVICFDNRVQVVAAAGSGKTSTMVAKAAYAIDRGFVEPERIVMLAFNKDAAKELEARAQ 278 Query: 248 RCLGPFAVDVKSVKARTFHSFGLEVIGQATGKKPRLAWWLESARSDLEKLMSIVDTLKDK 307 RC + V+ARTFH+ GL +I +ATG+KP + W A KL +VD LKD+ Sbjct: 279 RCFDRLGMGDTVVEARTFHALGLAIIAKATGRKPDIPEWAVDATLGFNKLAELVDDLKDR 338 Query: 308 DQVFRTQWDMFRIVLAQDMPEFGKDEEVAESWDHVNGRPSFWTKNNEQVKSYGELLIADW 367 FRTQWDMFR+V +D+P G D +A+ +D +G P T E+VKS E +IADW Sbjct: 339 STHFRTQWDMFRLVFGRDLPPLGADM-MADGYDR-DGTPYIRTLQGERVKSLEECVIADW 396 Query: 368 LFYNGVKYQYEAPYEHNVADAHHGQYRPDFYFPDIDAYLEHWGVDQDGNPPESFKGYKES 427 LFYNGV Y YE YE + A H QYRPDFY+PD Y EH+ +D DG PP+ F Y + Sbjct: 397 LFYNGVAYDYERRYEFDTATDTHRQYRPDFYYPDAQLYHEHFALDADGQPPKHFANYSDG 456 Query: 428 MEWKRRTHKEHETVLLETTTAGLADGQIFTYLTSELTRLGIRLDPNPDR--PVKGRKPIE 485 M WKR+ H T L+ETT+ GL GQ L L + LDPNPDR P +G KP+ Sbjct: 457 MHWKRQQHMARGTALVETTSFGLRSGQALQDLAERLGASDVELDPNPDREQPDQGAKPMP 516 Query: 486 NARLARTIRSFITHAKSNRLNVLGIRQRLDNEQHGQFKFRHRLFLNLIDEIWKAWETELR 545 +A L +R+FI HAKSN L + + RL QFK R+R FL + +++AW+ L Sbjct: 517 DADLIGLMRTFIAHAKSNCLTLDDMAARLRQMPEDQFKERYRRFLEIAGPVFQAWDNALA 576 Query: 546 SSQSIDFEDMLNQATDLIESGKWKSPYGLVMVDEFQDASYARAKLLAGLVKESGKHLFAV 605 +SIDFEDMLN A L+E G ++SPY LVM DEFQDAS ARA+L LV + G+HLFAV Sbjct: 577 DERSIDFEDMLNMAAGLLEQGHYESPYDLVMADEFQDASRARARLCRALVSQPGRHLFAV 636 Query: 606 GDDWQSINRFAGADISVMTNFQDGFGEHVTLKLEKTFRCVRSICDVSSAFVMKNPKQLRK 665 GDDWQSINRFAGAD+SVMT F++ G LKL++TFRC +++CDVSS F+ +NP Q+ K Sbjct: 637 GDDWQSINRFAGADVSVMTGFREWMGHGQVLKLQQTFRCPQALCDVSSRFISRNPAQIAK 696 Query: 666 LVTS-------IHDSADASRREANEAIAKLFSVVSSISEGIDHQQQKLAAATDNSDSAIS 718 V S + + +RRE + +G+ KL Sbjct: 697 KVRSAAPTMGPVLQAFQVNRRE-------------EVQDGVRQYLSKL------------ 731 Query: 719 IICADKEHQIRDVIAIQLKRIADEYRAERTRPTVYVLGRYQKDRQFVPLD---HFG--LD 773 HQ A+ R R TV+VLGRY+ DR VP D FG +D Sbjct: 732 -------HQQLLSGAVAQGR--------NGRVTVFVLGRYRADRGAVPSDWKAAFGSTMD 776 Query: 774 VEFVTMHSSKGLEADHVFIPKMTSDILGFPSRVADDPVLRLAMPGGDDYPFAEERRLFYV 833 VEF+T H SKG EAD+V +P M + FPS ADDPVL LAMP GD YP +EERRLFYV Sbjct: 777 VEFLTAHRSKGREADYVILPGMINR--SFPSLRADDPVLSLAMPDGDTYPLSEERRLFYV 834 Query: 834 ALTRARKTVTLVTVSGKESLFITEMMKEYKVPLLNREGQLANASEICPKCKIGLLSKWTG 893 ALTRAR++V + T+ GK S F+ E++K+ V + G A E CP CK+G+ G Sbjct: 835 ALTRARRSVAMFTLQGKHSPFLDELVKDGAVEVTAISGT-AIHEERCPVCKVGVFVDRNG 893 Query: 894 KYGPFIGCTRFPRC 907 +G F C+ +P C Sbjct: 894 PHGAFRSCSSYPLC 907 >ref|ZP_05134487.1| UvrD/REP helicase [Stenotrophomonas sp. SKA14] gb|EED38548.1| UvrD/REP helicase [Stenotrophomonas sp. SKA14] Length = 924 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 388/917 (42%), Positives = 515/917 (56%), Gaps = 78/917 (8%) Query: 14 GLFWTQIEIANSDAETFILDGIPNLRAKKLKIALGKTIAAIQHATKIKWLIENLEEQIEP 73 GLFW ++ + + G+PN R A + + + + + L E++ QI+ Sbjct: 59 GLFWARVALQTERGPVSV-GGLPN-RQAAQLAAAVQDVLSARSTRGRRGLFEDVLAQIQ- 115 Query: 74 IKSWVSSFRSAISAQLKQHGWLTTEFAKVNEA------LKPNSLGNLLDAPEIKDYLSTH 127 +W+S+ + W+T E + A L P+ L L + D L + Sbjct: 116 --AWLSAADALTDRGHACRRWITHEQQQALLADRPALPLSPDELERLFLDASVHDDLRSS 173 Query: 128 SEIIRTHGLETWRKPVSQVVAEFNEAHLRSQLDAFKDFFGKRGFLILYGIEKAPLTPEQR 187 + L W V AE N+A +L KDF + +E PLT EQ Sbjct: 174 HHLAALEALNDWHLDWPAVWAEANDAMATRELVLAKDFLDR--------VESRPLTEEQA 225 Query: 188 EAVICFDNRVLLVACAGSGKTSTMVAKVGYALLNRYLHPDHILLLAFNADAAAELRDRLE 247 AVICFDNRV +VA AGSGKTSTMVAK YA+ ++ P+ I++LAFN DAA EL +R + Sbjct: 226 RAVICFDNRVQVVASAGSGKTSTMVAKAAYAIDRGFVEPERIVMLAFNKDAARELEERAQ 285 Query: 248 RCLGPFAVDVKSVKARTFHSFGLEVIGQATGKKPRLAWWLESARSDLEKLMSIVDTLKDK 307 RC + V+ARTFH+ GL +IG+ATG+KP + W A KL +VD LKD+ Sbjct: 286 RCFDRLGMGDTVVEARTFHALGLAIIGKATGRKPDIPEWAIDATQGFNKLAELVDDLKDR 345 Query: 308 DQVFRTQWDMFRIVLAQDMPEFGKDEEVAESWDHVNGRPSFWTKNNEQVKSYGELLIADW 367 FRTQWDMFR+V +D+P FG E +A+ +D +G P T E+VKS E +IADW Sbjct: 346 SIHFRTQWDMFRLVFGRDLPPFGA-EMMADGYDR-DGTPYIRTLQGERVKSLEECVIADW 403 Query: 368 LFYNGVKYQYEAPYEHNVADAHHGQYRPDFYFPDIDAYLEHWGVDQDGNPPESFKGYKES 427 LFYNGV Y YE YE + A H QYRPDFY+PD Y EH+ +D +G PP+ F Y E Sbjct: 404 LFYNGVAYDYERRYEFDTATDTHRQYRPDFYYPDAALYHEHFALDANGQPPKHFDNYAEG 463 Query: 428 MEWKRRTHKEHETVLLETTTAGLADGQIFTYLTSELTRLGIRLDPNPDR--PVKGRKPIE 485 M+WKR+ H T L+ETT+ GL G L L I LDPNPDR P G KP+ Sbjct: 464 MQWKRQQHLARGTALVETTSFGLRSGHALHDLAKTLGASDIELDPNPDRELPDAGAKPMP 523 Query: 486 NARLARTIRSFITHAKSNRLNVLGIRQRLDNEQHGQFKFRHRLFLNLIDEIWKAWETELR 545 +A L +R+FI HAKSN L + + RL FK R+R FL + +++AW+ L Sbjct: 524 DADLIGLMRTFIAHAKSNCLTLDDMAGRLRQMPEDHFKERYRRFLEIAGPVFQAWDDALA 583 Query: 546 SSQSIDFEDMLNQATDLIESGKWKSPYGLVMVDEFQDASYARAKLLAGLVKESGKHLFAV 605 + IDFEDMLN A L+E G + SPY LV+ DEFQDAS ARA+L LV + G+HLFAV Sbjct: 584 DERGIDFEDMLNMAAGLLEQGHYASPYDLVLADEFQDASRARARLCRALVSQPGRHLFAV 643 Query: 606 GDDWQSINRFAGADISVMTNFQDGFGEHVTLKLEKTFRCVRSICDVSSAFVMKNPKQLRK 665 GDDWQSINRFAGAD+SVMT F++ G LKLE+TFRC +++CD+SS F+ +NP Q+ K Sbjct: 644 GDDWQSINRFAGADVSVMTGFREWMGHGQVLKLEQTFRCPQALCDISSRFISRNPAQIAK 703 Query: 666 LVTSIHDSA-------DASRREANEAIAKLFSVVSSISEGIDHQQQKLAAATDNSDSAIS 718 V S S +RRE + +G+ +Q LA Sbjct: 704 AVRSAAPSMGPVLQAFQMTRRE-------------EVQDGV---RQYLA----------- 736 Query: 719 IICADKEHQIRDVIAIQLKRIADEYRAERTRPTVYVLGRYQKDRQFVPLD---HFG--LD 773 K HQ A+ R R TV++LGRYQ DR VP + FG +D Sbjct: 737 -----KLHQQLLSGAVPQGR--------NGRVTVFILGRYQADRSAVPAEWRTSFGSTMD 783 Query: 774 VEFVTMHSSKGLEADHVFIPKMTSDILGFPSRVADDPVLRLAMPGGDDYPFAEERRLFYV 833 VEF+T H SKG EAD+V +P M + GFPS +DDPVL LAMP GD YP +EERRLFYV Sbjct: 784 VEFLTAHRSKGREADYVILPGMVNR--GFPSLRSDDPVLSLAMPDGDTYPLSEERRLFYV 841 Query: 834 ALTRARKTVTLVTVSGKESLFITEMMKEYKVPLLNREGQLANASEICPKCKIGLLSKWTG 893 ALTRAR++V + T+ GK SLF+ +++K+ V + G + N E CP CK+G+ + G Sbjct: 842 ALTRARRSVAMFTLQGKHSLFLDQLVKDGAVEVTGISGAVIN-EERCPVCKVGVFVERNG 900 Query: 894 KYGPFIGCTRFPRCDFR 910 +GPF C+ +P C R Sbjct: 901 PHGPFRSCSSYPLCHNR 917