BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2072.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004704343.1| TM2 domain-containing protein [Pseudomonas p...   192   1e-47
ref|NP_747192.1| hypothetical protein PP_5091 [Pseudomonas putid...   192   2e-47
gb|ADR62433.1| Hypothetical protein, conserved [Pseudomonas puti...   191   3e-47
ref|YP_001671361.1| TM2 domain-containing protein [Pseudomonas p...   189   1e-46
ref|YP_001270268.1| TM2 domain-containing protein [Pseudomonas p...   189   1e-46

>ref|YP_004704343.1| TM2 domain-containing protein [Pseudomonas putida S16]
 gb|AEJ15463.1| TM2 domain-containing protein [Pseudomonas putida S16]
          Length = 139

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/127 (78%), Positives = 117/127 (92%)

Query: 6   NNTHSKTLGYLLWIFGFLGAHRFYYGKPVTGTIWFFTLGLFGIGWIVDLFLIPSMDREAD 65
           ++THSKT+GYLLWIFGF G+HRFYYGKPVTGTIWFFTLGL GIGW++DLFLIPSMDREAD
Sbjct: 11  HDTHSKTIGYLLWIFGFTGSHRFYYGKPVTGTIWFFTLGLLGIGWLIDLFLIPSMDREAD 70

Query: 66  RRFVAGEINYSVAWLLLTFLGIFGAHRLYIGKWISGIVYFFTGGFFLLGVLYDFWTLNAQ 125
            RF +G I+Y++AW+LLTFLG+FG HRLY GKWI+ I+YFFTGG FL+GVLYDFWTLN+Q
Sbjct: 71  LRFQSGRIDYNIAWILLTFLGVFGLHRLYQGKWITAIIYFFTGGLFLVGVLYDFWTLNSQ 130

Query: 126 ISERNHG 132
           +SERN G
Sbjct: 131 VSERNAG 137


>ref|NP_747192.1| hypothetical protein PP_5091 [Pseudomonas putida KT2440]
 gb|AAN70656.1|AE016710_1 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 139

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/127 (77%), Positives = 117/127 (92%)

Query: 6   NNTHSKTLGYLLWIFGFLGAHRFYYGKPVTGTIWFFTLGLFGIGWIVDLFLIPSMDREAD 65
           ++THSKT+GYLLWIFGF G+HRFYYGKP+TGTIWFFTLGL GIGW++DLFLIPSMDREAD
Sbjct: 11  HDTHSKTIGYLLWIFGFTGSHRFYYGKPITGTIWFFTLGLLGIGWLIDLFLIPSMDREAD 70

Query: 66  RRFVAGEINYSVAWLLLTFLGIFGAHRLYIGKWISGIVYFFTGGFFLLGVLYDFWTLNAQ 125
            RF +G I+Y++AW+LLTFLG+FG HRLY GKWI+ I+YFFTGG FL+GVLYDFWTLN+Q
Sbjct: 71  LRFQSGRIDYNIAWILLTFLGVFGLHRLYQGKWITAIIYFFTGGLFLVGVLYDFWTLNSQ 130

Query: 126 ISERNHG 132
           +SERN G
Sbjct: 131 VSERNAG 137


>gb|ADR62433.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 139

 Score =  191 bits (485), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/127 (77%), Positives = 117/127 (92%)

Query: 6   NNTHSKTLGYLLWIFGFLGAHRFYYGKPVTGTIWFFTLGLFGIGWIVDLFLIPSMDREAD 65
           ++THSKT+GYLLWIFGF G+HRFYYG+P+TGTIWFFTLGL GIGW++DLFLIPSMDREAD
Sbjct: 11  HDTHSKTIGYLLWIFGFTGSHRFYYGRPITGTIWFFTLGLLGIGWLIDLFLIPSMDREAD 70

Query: 66  RRFVAGEINYSVAWLLLTFLGIFGAHRLYIGKWISGIVYFFTGGFFLLGVLYDFWTLNAQ 125
            RF +G I+Y++AW+LLTFLG+FG HRLY GKWI+ I+YFFTGG FL+GVLYDFWTLN+Q
Sbjct: 71  LRFQSGRIDYNIAWILLTFLGVFGLHRLYQGKWITAIIYFFTGGLFLVGVLYDFWTLNSQ 130

Query: 126 ISERNHG 132
           +SERN G
Sbjct: 131 VSERNAG 137


>ref|YP_001671361.1| TM2 domain-containing protein [Pseudomonas putida GB-1]
 gb|ABZ01026.1| TM2 domain containing protein? [Pseudomonas putida GB-1]
          Length = 139

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/127 (76%), Positives = 116/127 (91%)

Query: 6   NNTHSKTLGYLLWIFGFLGAHRFYYGKPVTGTIWFFTLGLFGIGWIVDLFLIPSMDREAD 65
           ++THSKT+GYLLWIFGF G+HRFYYGKP+TGT+WFFT GL GIGW++DLFLIPSMDREAD
Sbjct: 11  HDTHSKTIGYLLWIFGFTGSHRFYYGKPITGTLWFFTFGLLGIGWLIDLFLIPSMDREAD 70

Query: 66  RRFVAGEINYSVAWLLLTFLGIFGAHRLYIGKWISGIVYFFTGGFFLLGVLYDFWTLNAQ 125
            RF +G I+Y++AW+LLTFLG+FG HRLY GKWI+ I+YFFTGG FL+GVLYDFWTLN+Q
Sbjct: 71  LRFQSGRIDYNIAWVLLTFLGVFGLHRLYQGKWITAIIYFFTGGLFLVGVLYDFWTLNSQ 130

Query: 126 ISERNHG 132
           +SERN G
Sbjct: 131 VSERNAG 137


>ref|YP_001270268.1| TM2 domain-containing protein [Pseudomonas putida F1]
 gb|ABQ81084.1| TM2 domain containing protein+B7201 [Pseudomonas putida F1]
          Length = 139

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/127 (76%), Positives = 116/127 (91%)

Query: 6   NNTHSKTLGYLLWIFGFLGAHRFYYGKPVTGTIWFFTLGLFGIGWIVDLFLIPSMDREAD 65
           ++THSKT+GYLLWIFGF G+HRFYYG+P+TGTIWFFT GL GIGW++DLFLIPSMDREAD
Sbjct: 11  HDTHSKTIGYLLWIFGFTGSHRFYYGRPITGTIWFFTFGLLGIGWLIDLFLIPSMDREAD 70

Query: 66  RRFVAGEINYSVAWLLLTFLGIFGAHRLYIGKWISGIVYFFTGGFFLLGVLYDFWTLNAQ 125
            RF +G I+Y++AW+LLTFLG+FG HRLY GKWI+ I+YFFTGG FL+GVLYDFWTLN+Q
Sbjct: 71  LRFQSGRIDYNIAWILLTFLGVFGLHRLYQGKWITAIIYFFTGGLFLVGVLYDFWTLNSQ 130

Query: 126 ISERNHG 132
           +SERN G
Sbjct: 131 VSERNAG 137