BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2071.p         (63 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADR59801.1| Hypothetical protein, conserved [Pseudomonas puti...    63   1e-08
ref|NP_745762.1| hypothetical protein PP_3626 [Pseudomonas putid...    62   4e-08
ref|YP_004702543.1| hypothetical protein PPS_3116 [Pseudomonas p...    61   5e-08
ref|YP_001668527.1| hypothetical protein PputGB1_2290 [Pseudomon...    61   5e-08
ref|YP_001749725.1| hypothetical protein PputW619_2864 [Pseudomo...    61   7e-08

>gb|ADR59801.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 66

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 7  VAKDVKSPCVSLCKLKHEVCPGCGRTRDEIKDWKSMKRKEQLHTVELAAKRMKALKK 63
          +AKD+ +PCVSLC+L  E+C  CGRTRDEI+ W+ MKR E++ TV+ AA RMKA+ K
Sbjct: 1  MAKDIDNPCVSLCQLNSELCVSCGRTRDEIRKWRGMKRPEKMATVQRAATRMKAIAK 57


>ref|NP_745762.1| hypothetical protein PP_3626 [Pseudomonas putida KT2440]
 gb|AAN69226.1|AE016557_6 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 66

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 7  VAKDVKSPCVSLCKLKHEVCPGCGRTRDEIKDWKSMKRKEQLHTVELAAKRM 58
          +AKD+ +PCVSLC+L  E+C  CGRTRDEI+ W+ MKR E++ TV+ AA RM
Sbjct: 1  MAKDIDNPCVSLCQLNSELCVSCGRTRDEIRKWRGMKRPEKMATVQRAATRM 52


>ref|YP_004702543.1| hypothetical protein PPS_3116 [Pseudomonas putida S16]
 gb|AEJ13663.1| conserved hypothetical protein [Pseudomonas putida S16]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query: 7  VAKDVKSPCVSLCKLKHEVCPGCGRTRDEIKDWKSMKRKEQLHTVELAAKRM 58
          +AKD+ +PCVSLC+L  E+C  CGR+RDEI+ W+SMKR E++ TV+ AA RM
Sbjct: 1  MAKDIDNPCVSLCQLNSELCVSCGRSRDEIRKWRSMKRPEKMATVQRAATRM 52


>ref|YP_001668527.1| hypothetical protein PputGB1_2290 [Pseudomonas putida GB-1]
 gb|ABY98191.1| protein of unknown function DUF1289 [Pseudomonas putida GB-1]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 7  VAKDVKSPCVSLCKLKHEVCPGCGRTRDEIKDWKSMKRKEQLHTVELAAKRM 58
          +AKD+ +PCVSLC+L  E+C  CGRTRDEI+ W+ MKR E++ TV+ AA RM
Sbjct: 1  MAKDIDNPCVSLCQLNSELCVSCGRTRDEIRKWRGMKRPEKMATVQRAATRM 52


>ref|YP_001749725.1| hypothetical protein PputW619_2864 [Pseudomonas putida W619]
 gb|ACA73356.1| protein of unknown function DUF1289 [Pseudomonas putida W619]
          Length = 66

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 7  VAKDVKSPCVSLCKLKHEVCPGCGRTRDEIKDWKSMKRKEQLHTVELAAKRMKALKK 63
          +AKD+++PCVSLC+L  E+C  CGRTR+EI+ W+ MKR E++ TV+ AA RMKA+ K
Sbjct: 1  MAKDIENPCVSLCQLNSELCVSCGRTREEIRKWRGMKRPEKMATVQRAATRMKAIVK 57