BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2069.p (464 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775110.1| CBS domains containing hemolysin protein [He... 806 0.0 ref|NP_903912.1| hypothetical protein CV_4242 [Chromobacterium v... 481 e-133 ref|YP_001004776.1| hypothetical protein YE0403 [Yersinia entero... 480 e-133 ref|YP_160561.1| hypothetical protein ebA6189 [Aromatoleum aroma... 478 e-133 gb|ADV97301.1| putative inner membrane protein [Yersinia pestis ... 478 e-133 >ref|YP_003775110.1| CBS domains containing hemolysin protein [Herbaspirillum seropedicae SmR1] gb|ADJ63202.1| CBS domains containing hemolysin protein [Herbaspirillum seropedicae SmR1] Length = 442 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 417/435 (95%), Positives = 427/435 (98%) Query: 4 MSIFTSLLLILLLVVVSAFLSCAEISIAASRKIRLEMMSKEGVHNADRVLSLQAQPGNFF 63 MSIFTSLLLILLLVVVSAFLSCAEISIAASRKIRLEMMSKEGVHNADRVLSLQAQPGNFF Sbjct: 1 MSIFTSLLLILLLVVVSAFLSCAEISIAASRKIRLEMMSKEGVHNADRVLSLQAQPGNFF 60 Query: 64 TVVQIGLNAVAILGGVVGEPALTPHMREIVSTFYVGPLLENISFAMSFLVVTAFFILFAD 123 TVVQIGLNAVAILGGVVGEPALTPHMREI+S+FY+GP LEN SFAMSFLVVTAFFILFAD Sbjct: 61 TVVQIGLNAVAILGGVVGEPALTPHMREIISSFYIGPWLENASFAMSFLVVTAFFILFAD 120 Query: 124 LMPKRLAMAAPERAAVALVQPMLLLETLFRPLVWFFNSLSKWIFTLFGLPQVRQDVITPS 183 LMPKRLAM APERAAVALV+PMLLLETLF+PLVWFFNSLSKWIFTLFGLPQVRQ+VITP+ Sbjct: 121 LMPKRLAMVAPERAAVALVKPMLLLETLFKPLVWFFNSLSKWIFTLFGLPQVRQEVITPN 180 Query: 184 EIHAMVDAGAQAGVLLTQEHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSEDMIRQKI 243 EIHAMVDAGAQAGVLLTQEHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSE IRQKI Sbjct: 181 EIHAMVDAGAQAGVLLTQEHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSEATIRQKI 240 Query: 244 IDHPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVHTPLSIPDSLNLWEV 303 IDHPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVH PLSIPDSLNLWEV Sbjct: 241 IDHPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVHPPLSIPDSLNLWEV 300 Query: 304 LERMKAMDEDLAIVVNEYALVVGIISITDVTGVLMGNLLAITEEEQQIVRRDENSWLMDG 363 LERMKAMDEDLAIVVNEYALVVGIIS TDVTGVLMGNLLAITEEEQQIVRRDENSWLMDG Sbjct: 301 LERMKAMDEDLAIVVNEYALVVGIISTTDVTGVLMGNLLAITEEEQQIVRRDENSWLMDG 360 Query: 364 LTPLNDVMNELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLFSDFKFEVVDIEGNRI 423 LTPLNDVM+ELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLF++FKFEVVDIEGNRI Sbjct: 361 LTPLNDVMSELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLFAEFKFEVVDIEGNRI 420 Query: 424 NQLLVTRFKQDKGEK 438 NQLLVTRFKQDK EK Sbjct: 421 NQLLVTRFKQDKSEK 435 >ref|NP_903912.1| hypothetical protein CV_4242 [Chromobacterium violaceum ATCC 12472] gb|AAQ61902.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 438 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 242/426 (56%), Positives = 324/426 (76%), Gaps = 1/426 (0%) Query: 4 MSIFTSLLLILLLVVVSAFLSCAEISIAASRKIRLEMMSKEGVHNADRVLSLQAQPGNFF 63 MS+ +L +ILLL+ SAF S +EIS+AA+RKI+L ++++EG NA+RVL LQ QPG+FF Sbjct: 1 MSLANNLSIILLLIAASAFFSVSEISLAAARKIKLRLLAEEGNLNAERVLELQQQPGHFF 60 Query: 64 TVVQIGLNAVAILGGVVGEPALTPHMREIVSTFYVGPLLENISFAMSFLVVTAFFILFAD 123 TVVQIGLNAVAIL G++GE A TP+ ++ +E++SF +SF VT+ F+LFAD Sbjct: 61 TVVQIGLNAVAILAGILGEAAFTPYFAAMLHLVTPAGWVEHLSFVLSFAAVTSLFVLFAD 120 Query: 124 LMPKRLAMAAPERAAVALVQPMLLLETLFRPLVWFFNSLSKWIFTLFGLPQVRQDVITPS 183 LMPKRL M APER A+ +V+PML LFRPLVW FN L+ F + G+P R + +TP+ Sbjct: 121 LMPKRLGMVAPERIALLVVRPMLFCVALFRPLVWLFNGLANVFFRMLGVPTARAEDLTPA 180 Query: 184 EIHAMVDAGAQAGVLLTQEHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSEDMIRQKI 243 ++ AM+DAGA+AGVL +EHHLIENVFELESR VPS+MT R+SIVYF L + E I+QKI Sbjct: 181 DLLAMMDAGAEAGVLQQKEHHLIENVFELESRTVPSSMTARESIVYFTLHEDEASIKQKI 240 Query: 244 IDHPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVHTPLSIPDSLNLWEV 303 +HPH++FLVCDG ID+V+GY+DSKD+L RL+ + S+ + + L IPDSL L E+ Sbjct: 241 AEHPHTKFLVCDGVIDSVIGYVDSKDILMRLINQQSLSMKRELTIRNVLIIPDSLTLSEL 300 Query: 304 LERMKAMDEDLAIVVNEYALVVGIISITDVTGVLMGNLLAITEEEQQIVRRDENSWLMDG 363 LER KA ED A+V+NEYALVVG+I++ D+ +MG+L++ +EE QIVRRD+ SWL+DG Sbjct: 301 LERFKASREDFAVVMNEYALVVGVITLNDLMSTVMGDLVSQFQEE-QIVRRDDRSWLVDG 359 Query: 364 LTPLNDVMNELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLFSDFKFEVVDIEGNRI 423 TP+ DV+ LDI+ +P+ YET++GF+MYMLR+IPK+TD V F +KFEVVDI+ RI Sbjct: 360 ATPVEDVLRALDIESFPDDENYETIAGFMMYMLRRIPKRTDSVEFEGYKFEVVDIDNYRI 419 Query: 424 NQLLVT 429 +QLLVT Sbjct: 420 DQLLVT 425 >ref|YP_001004776.1| hypothetical protein YE0403 [Yersinia enterocolitica subsp. enterocolitica 8081] emb|CAL10530.1| putative membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 443 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 246/426 (57%), Positives = 315/426 (73%), Gaps = 1/426 (0%) Query: 6 IFTSLLLILLLVVVSAFLSCAEISIAASRKIRLEMMSKEGVHNADRVLSLQAQPGNFFTV 65 + S+LLIL L+ VSAF S +EIS+AASRKI+L++++ EG NA RVL LQ PG FFTV Sbjct: 1 MLNSILLILFLIAVSAFFSLSEISLAASRKIKLKLLADEGDINALRVLKLQETPGIFFTV 60 Query: 66 VQIGLNAVAILGGVVGEPALTPHMREIVSTFYVGPLLENISFAMSFLVVTAFFILFADLM 125 VQIGLNAVAILGG+VG+ A +P + + F L + +SF SF++VT+ FILFADL Sbjct: 61 VQIGLNAVAILGGIVGDAAFSPSFKVVFERFMSPELADQVSFICSFVLVTSLFILFADLT 120 Query: 126 PKRLAMAAPERAAVALVQPMLLLETLFRPLVWFFNSLSKWIFTLFGLPQVRQDVITPSEI 185 PKR+ M +PE AV +V PM + RPLVWFFN ++ IF LF LP VR D IT +I Sbjct: 121 PKRIGMISPEAVAVRIVNPMRFCIMICRPLVWFFNGMANLIFRLFKLPMVRNDDITSDDI 180 Query: 186 HAMVDAGAQAGVLLTQEHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSEDMIRQKIID 245 +A+V+AGA AGVL QEH LIENVFELESR VPS+MT R+S++YF L +SED I++KI Sbjct: 181 YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTSRESVIYFDLRESEDSIKEKIST 240 Query: 246 HPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVHTPLSIPDSLNLWEVLE 305 HPHS+FLVCDGHID V+GY+DSKD+L R+L + L+ + + L +PD+L L E LE Sbjct: 241 HPHSKFLVCDGHIDQVVGYVDSKDLLNRVLGNQSLVLSSGVQIRSALIVPDTLTLSEALE 300 Query: 306 RMKAMDEDLAIVVNEYALVVGIISITDVTGVLMGNLLAITEEEQQIVRRDENSWLMDGLT 365 K ED A+++NEYALVVGII++ DV LMG+L+ +EE QIV RDENSWL++G T Sbjct: 301 SFKTAGEDFAVILNEYALVVGIITLNDVMTTLMGDLVGQGQEE-QIVARDENSWLIEGGT 359 Query: 366 PLNDVMNELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLFSDFKFEVVDIEGNRINQ 425 P+ DVM L IDE+P YET+ GF+MYMLRKIPK+TDFV ++ +KFEVVDI+ +I+Q Sbjct: 360 PIEDVMRVLHIDEFPQSGNYETIGGFMMYMLRKIPKRTDFVKYAGYKFEVVDIDSYKIDQ 419 Query: 426 LLVTRF 431 LLVTRF Sbjct: 420 LLVTRF 425 >ref|YP_160561.1| hypothetical protein ebA6189 [Aromatoleum aromaticum EbN1] emb|CAI09660.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 432 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 239/427 (55%), Positives = 320/427 (74%), Gaps = 1/427 (0%) Query: 4 MSIFTSLLLILLLVVVSAFLSCAEISIAASRKIRLEMMSKEGVHNADRVLSLQAQPGNFF 63 MS+ +L+I LL+ +SAF S AEIS+AASRKI+L +M+++G A+RVL+LQ PG+FF Sbjct: 1 MSVTNQILVIALLIGISAFFSIAEISLAASRKIKLRLMAQQGNPVAERVLALQENPGHFF 60 Query: 64 TVVQIGLNAVAILGGVVGEPALTPHMREIVSTFYVGPLLENISFAMSFLVVTAFFILFAD 123 TVVQIG NAVAILGG+VGE L+P + +++ Y GP+LE++SF +SF++VT+ F+LF+D Sbjct: 61 TVVQIGQNAVAILGGIVGESTLSPAVAQLIGVLYEGPMLESVSFVLSFVIVTSLFVLFSD 120 Query: 124 LMPKRLAMAAPERAAVALVQPMLLLETLFRPLVWFFNSLSKWIFTLFGLPQVRQDVITPS 183 L+PKRL M +PER A+A+V PM F PLVWFF+ L+ +F LF LP VR + IT + Sbjct: 121 LVPKRLGMTSPERVAIAVVAPMRFCVLAFAPLVWFFDGLANALFRLFKLPNVRTENITSA 180 Query: 184 EIHAMVDAGAQAGVLLTQEHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSEDMIRQKI 243 EI AMVD GAQ G LL QE LI NVFEL+SR VPSAMT R+SIVYF L ++ED IR K+ Sbjct: 181 EIVAMVDVGAQTGALLKQERQLIVNVFELDSRTVPSAMTNRESIVYFTLNETEDSIRAKL 240 Query: 244 IDHPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVHTPLSIPDSLNLWEV 303 + H++F VCD ID V+GY+DSKD+ R+L G++ SL +V L IPD+L L+E Sbjct: 241 VAQTHAKFPVCDSTIDTVVGYVDSKDIFARILSGQKLSLRADPVVRNALVIPDTLTLFEA 300 Query: 304 LERMKAMDEDLAIVVNEYALVVGIISITDVTGVLMGNLLAITEEEQQIVRRDENSWLMDG 363 LER +A ED A++VNEYAL+VG++++ D+ +MG L + +EE IV+RDE SWL+DG Sbjct: 301 LERFRAAREDFAMIVNEYALIVGLLTLQDIMNTVMGELGSAFQEE-LIVKRDEGSWLIDG 359 Query: 364 LTPLNDVMNELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLFSDFKFEVVDIEGNRI 423 +TP+ DVM LDIDE+ YET++GF+MYMLRK+PK+TD V + D+KFEVVDI+ RI Sbjct: 360 ITPIEDVMQALDIDEFVGHENYETIAGFMMYMLRKVPKRTDSVSYRDYKFEVVDIDNYRI 419 Query: 424 NQLLVTR 430 +QLLVTR Sbjct: 420 DQLLVTR 426 >gb|ADV97301.1| putative inner membrane protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 443 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 245/426 (57%), Positives = 314/426 (73%), Gaps = 1/426 (0%) Query: 6 IFTSLLLILLLVVVSAFLSCAEISIAASRKIRLEMMSKEGVHNADRVLSLQAQPGNFFTV 65 + S+LLIL L+ VSAF S +EIS+AASRKI+L++++ EG NA RVL LQ PG FFTV Sbjct: 1 MLNSILLILFLIAVSAFFSLSEISLAASRKIKLKLLADEGDTNALRVLKLQETPGMFFTV 60 Query: 66 VQIGLNAVAILGGVVGEPALTPHMREIVSTFYVGPLLENISFAMSFLVVTAFFILFADLM 125 VQIGLNAVAILGG+VG+ A +P + + F L + SF SF++VT+ FILFADL Sbjct: 61 VQIGLNAVAILGGIVGDAAFSPSFKLVFERFMAPELADQASFVCSFVLVTSLFILFADLT 120 Query: 126 PKRLAMAAPERAAVALVQPMLLLETLFRPLVWFFNSLSKWIFTLFGLPQVRQDVITPSEI 185 PKR+ M +PE AV +V PM +FRPLVWFFN ++ IF LF LP VR D IT +I Sbjct: 121 PKRIGMISPEAVAVRIVNPMRFCLMIFRPLVWFFNGMANLIFRLFKLPMVRNDDITSDDI 180 Query: 186 HAMVDAGAQAGVLLTQEHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSEDMIRQKIID 245 +A+V+AGA AGVL QEH LIENVFELESR VPS+MT R++++YF L +SED I+ KI Sbjct: 181 YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTSRENVIYFDLRESEDSIKDKIST 240 Query: 246 HPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVHTPLSIPDSLNLWEVLE 305 HPHS+FLVCDGHID V+GY+DSKD+L R+L + L+ + + L +PD+L L EVLE Sbjct: 241 HPHSKFLVCDGHIDQVVGYVDSKDLLNRVLGNQSLVLSSGVQIRSALIVPDTLTLSEVLE 300 Query: 306 RMKAMDEDLAIVVNEYALVVGIISITDVTGVLMGNLLAITEEEQQIVRRDENSWLMDGLT 365 K ED A+++NEYALVVGII++ DV LMG+L+ +EE QIV RDENSWL++G T Sbjct: 301 SFKTAGEDFAVILNEYALVVGIITLNDVMTTLMGDLVGQGQEE-QIVARDENSWLIEGGT 359 Query: 366 PLNDVMNELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLFSDFKFEVVDIEGNRINQ 425 P+ DVM L ID++P YET+ GF+MYMLRKIPK+TDFV ++ +KFEVVDI+ +I+Q Sbjct: 360 PIEDVMRVLHIDDFPQSGNYETIGGFMMYMLRKIPKRTDFVKYAGYKFEVVDIDSYKIDQ 419 Query: 426 LLVTRF 431 LLVTR Sbjct: 420 LLVTRL 425