BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2067.p         (350 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002008845.1| thiamine biosynthesis lipoprotein; apbe fami...   342   4e-92
ref|YP_842013.1| protein involved in thiamine biosynthesis [Rals...   342   4e-92
ref|YP_004682579.1| thiamine biosynthesis protein [Cupriavidus n...   342   5e-92
ref|YP_299402.1| ApbE-like lipoprotein [Ralstonia eutropha JMP13...   320   3e-85
ref|YP_587765.1| ApbE-like lipoprotein [Cupriavidus metalliduran...   317   3e-84

>ref|YP_002008845.1| thiamine biosynthesis lipoprotein; apbe family [Cupriavidus
           taiwanensis LMG 19424]
 emb|CAQ72793.1| Thiamine biosynthesis lipoprotein; apbE family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 335

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 200/336 (59%), Positives = 233/336 (69%), Gaps = 7/336 (2%)

Query: 18  HRVLIPVDLQAPSLLPPDVA-LQRLSGQTMGTTWSVQALAPRSVTQETIATAIAARLQRV 76
           +RVL+PV L AP   P   A LQR  G TMGT+WSV AL P       I   I A L RV
Sbjct: 2   NRVLVPVALSAPPSPPAAGARLQRWGGPTMGTSWSVAALLPPDADAGAIGAGIRAVLGRV 61

Query: 77  IDEMSTWEADSLISRFNRAPAGSWHALPEDFFTVLDAALTMAVDSAGAFDPTVGPLVDLW 136
           I +MS WEADS +SRFNRAP+GSWHALP D F VL AAL +A DS GA+DP+ GPLVDLW
Sbjct: 62  IAQMSNWEADSDLSRFNRAPSGSWHALPADAFAVLQAALQVARDSGGAYDPSAGPLVDLW 121

Query: 137 GFGAGSVQRDALRLPDPTLLESTRQRCGWQRLVFDRGQRKVQQAGGVHLDFSGIAKGYAV 196
           GFG    +R     P P  +++ R RCGW R+  D   R+  Q GGV LDF  IAKG+AV
Sbjct: 122 GFGPAPARRAP---PSPDDVQAARARCGWARIEIDAAGRRAWQPGGVALDFCAIAKGFAV 178

Query: 197 DLVAQALRDCGCVSWLAEVGGELVGEGVKADGQPWWVALERPP---ADDSPGMVVALHGL 253
           D VA+ L + G    L E+GGEL G GVK DG PWWVALE PP   +DD+   +VALHGL
Sbjct: 179 DAVARYLCEQGLEHHLTEIGGELRGHGVKPDGMPWWVALEAPPGWGSDDAQQTLVALHGL 238

Query: 254 AIATSGDYRRYVDHDGLRYAHTIDPRTGTPVRTALASVTVLHRQCMVADALATVLTVLGE 313
           ++ATSGDYRRY D DG RYAHTIDPRTG P   ALASVTV+H QCM+ADAL+T LTVLG 
Sbjct: 239 SVATSGDYRRYFDSDGRRYAHTIDPRTGYPASHALASVTVIHPQCMLADALSTALTVLGP 298

Query: 314 EAGLSFARERGIAALFITREADGFRESLTPALAAML 349
           +AG++ AR  GIAA F+ R A+GF E L+PA AAML
Sbjct: 299 DAGMAHARRLGIAARFVVRTANGFLEHLSPAFAAML 334


>ref|YP_842013.1| protein involved in thiamine biosynthesis [Ralstonia eutropha H16]
 emb|CAJ97283.1| protein involved in thiamine biosynthesis [Ralstonia eutropha H16]
          Length = 338

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 197/336 (58%), Positives = 229/336 (68%), Gaps = 7/336 (2%)

Query: 18  HRVLIPVDLQAPSLLPP-DVALQRLSGQTMGTTWSVQALAPRSVTQETIATAIAARLQRV 76
           +RVL+PV L AP   P  D+ LQR  G TMGTTWSV AL P +   + IA  I A L  V
Sbjct: 5   NRVLVPVALTAPPQPPAADMRLQRWGGATMGTTWSVAALLPPATDADAIAAGIQAVLDGV 64

Query: 77  IDEMSTWEADSLISRFNRAPAGSWHALPEDFFTVLDAALTMAVDSAGAFDPTVGPLVDLW 136
           I +MS WEADS +SRFN A  GSWHALPED F VL  AL +A DS GA+DP+ GPLVDLW
Sbjct: 65  IAQMSNWEADSDLSRFNGAAPGSWHALPEDCFMVLQCALLVARDSGGAYDPSAGPLVDLW 124

Query: 137 GFGAGSVQRDALRLPDPTLLESTRQRCGWQRLVFDRGQRKVQQAGGVHLDFSGIAKGYAV 196
           GFG    +      P P  +++TR RCGW R+  D   R+  Q GGV LDF  IAKG+AV
Sbjct: 125 GFGPAPARTAP---PSPDAVQATRGRCGWARIEVDATGRRAWQPGGVSLDFCAIAKGFAV 181

Query: 197 DLVAQALRDCGCVSWLAEVGGELVGEGVKADGQPWWVALERPP---ADDSPGMVVALHGL 253
           D VA  L + G    L E+GGEL G GVK DG PWWVALE PP   +D +   +VALHGL
Sbjct: 182 DAVAGYLCEQGLDHHLTEIGGELRGHGVKPDGMPWWVALEAPPGLGSDAAGQTLVALHGL 241

Query: 254 AIATSGDYRRYVDHDGLRYAHTIDPRTGTPVRTALASVTVLHRQCMVADALATVLTVLGE 313
           ++ATSGDYRRY D DG RYAHTIDPRTG P   ALASVTV+H QCM+ADAL+T LTVLG 
Sbjct: 242 SVATSGDYRRYFDSDGRRYAHTIDPRTGYPASHALASVTVIHAQCMLADALSTALTVLGP 301

Query: 314 EAGLSFARERGIAALFITREADGFRESLTPALAAML 349
           +AG++ AR  GIAA F+ R   GF E L+PA AAML
Sbjct: 302 QAGMAHARRHGIAARFLVRTPGGFDEQLSPAFAAML 337


>ref|YP_004682579.1| thiamine biosynthesis protein [Cupriavidus necator N-1]
 gb|AEI81347.1| protein involved in thiamine biosynthesis [Cupriavidus necator N-1]
          Length = 338

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 197/336 (58%), Positives = 228/336 (67%), Gaps = 7/336 (2%)

Query: 18  HRVLIPVDLQAPSLLPP-DVALQRLSGQTMGTTWSVQALAPRSVTQETIATAIAARLQRV 76
           +RVL+PV L AP   P  D  LQR  G TMGTTWSV AL P +     IA  I A L  V
Sbjct: 5   NRVLVPVALTAPPQPPAADTRLQRWGGVTMGTTWSVAALLPPAADAHGIAAGIQAVLDGV 64

Query: 77  IDEMSTWEADSLISRFNRAPAGSWHALPEDFFTVLDAALTMAVDSAGAFDPTVGPLVDLW 136
           I +MS WEADS +SRFNRA  G+WHALP+D F VL  AL +A DS GA+DP+ GPLVDLW
Sbjct: 65  ITQMSNWEADSDLSRFNRAAPGNWHALPDDCFAVLQCALQVARDSGGAYDPSAGPLVDLW 124

Query: 137 GFGAGSVQRDALRLPDPTLLESTRQRCGWQRLVFDRGQRKVQQAGGVHLDFSGIAKGYAV 196
           GFG    +      P P  +++TR RCGW R+  D   R+ +Q GG+ LDF  IAKG+AV
Sbjct: 125 GFGPAPARSAP---PSPDAVQATRSRCGWARIEVDAAGRRARQPGGLSLDFCAIAKGFAV 181

Query: 197 DLVAQALRDCGCVSWLAEVGGELVGEGVKADGQPWWVALERPPADDSPG---MVVALHGL 253
           D VA+ L + G    L E+GGEL G GVK D  PWWVALE PP  DS       VALHGL
Sbjct: 182 DAVARYLCEQGLDHHLTEIGGELRGHGVKPDVMPWWVALESPPGLDSDAAGQTRVALHGL 241

Query: 254 AIATSGDYRRYVDHDGLRYAHTIDPRTGTPVRTALASVTVLHRQCMVADALATVLTVLGE 313
           ++ATSGDYRRY D DG RYAHTIDPRTG P   ALASVTV+H QCM+ADAL+T LTVLG 
Sbjct: 242 SVATSGDYRRYFDSDGRRYAHTIDPRTGYPASHALASVTVIHGQCMLADALSTALTVLGP 301

Query: 314 EAGLSFARERGIAALFITREADGFRESLTPALAAML 349
           EAG++ AR  GIAA F+ R  DGF E L+PA AAML
Sbjct: 302 EAGMAHARRHGIAARFLVRTPDGFDEHLSPAFAAML 337


>ref|YP_299402.1| ApbE-like lipoprotein [Ralstonia eutropha JMP134]
 gb|AAZ64558.1| ApbE-like lipoprotein [Ralstonia eutropha JMP134]
          Length = 335

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 183/336 (54%), Positives = 216/336 (64%), Gaps = 7/336 (2%)

Query: 18  HRVLIPVDLQAPSLLP-PDVALQRLSGQTMGTTWSVQALAPRSVTQETIATAIAARLQRV 76
           +RVLIP  L AP + P      QR SG+TMGTTWSV A+  +    + +   I A L  V
Sbjct: 2   NRVLIPPTLSAPPVPPGAQTRAQRWSGETMGTTWSVVAMLVQEADADALEQGICAVLDSV 61

Query: 77  IDEMSTWEADSLISRFNRAPAGSWHALPEDFFTVLDAALTMAVDSAGAFDPTVGPLVDLW 136
           I +MS WEADS +SRFNRAPA +W ALP D   VL  AL +A DS GA+DP+ GPLVDLW
Sbjct: 62  IAQMSNWEADSDVSRFNRAPADTWVALPADCVRVLACALQVARDSGGAYDPSAGPLVDLW 121

Query: 137 GFGAGSVQRDALRLPDPTLLESTRQRCGWQRLVFDRGQRKVQQAGGVHLDFSGIAKGYAV 196
           GFG    +      P P  +   RQ+CGW R+  D       Q GGV LDF  IAKG+AV
Sbjct: 122 GFGPAPRR---CATPAPDQVAQVRQQCGWDRIELDIDGGCALQPGGVSLDFCAIAKGFAV 178

Query: 197 DLVAQALRDCGCVSWLAEVGGELVGEGVKADGQPWWVALERPP---ADDSPGMVVALHGL 253
           D VAQ L   G    L E+GGEL G GVK DG PWWV LE PP          +VA++GL
Sbjct: 179 DAVAQYLESEGVAHHLTEIGGELRGHGVKPDGLPWWVQLETPPDCAVTAQEQTLVAMYGL 238

Query: 254 AIATSGDYRRYVDHDGLRYAHTIDPRTGTPVRTALASVTVLHRQCMVADALATVLTVLGE 313
           ++ATSGDYRR+ D +G RYAHTIDPRTG P   ALASVTVLH +CM+ADAL+T LTVLG 
Sbjct: 239 SVATSGDYRRFFDSEGRRYAHTIDPRTGYPASHALASVTVLHTECMMADALSTALTVLGP 298

Query: 314 EAGLSFARERGIAALFITREADGFRESLTPALAAML 349
           +AG+  AR  GIAA F+ R   GF E L+PA AAML
Sbjct: 299 QAGMEHARRHGIAARFLVRTPGGFDEHLSPAFAAML 334


>ref|YP_587765.1| ApbE-like lipoprotein [Cupriavidus metallidurans CH34]
 gb|ABF12496.1| ApbE-like lipoprotein, membrane-associated lipoprotein involved in
           thiamine biosynthesis [Cupriavidus metallidurans CH34]
          Length = 337

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 179/337 (53%), Positives = 221/337 (65%), Gaps = 9/337 (2%)

Query: 18  HRVLIPVDLQ-APSLLPPDVALQRLSGQTMGTTWSVQALAPRSVTQETIATAIAARLQRV 76
           +RVLIP  L   P +  P  ++ + +G+TMGTTW+V+A+  R      +   I A L  V
Sbjct: 2   NRVLIPATLDLPPPVREPQGSIAQWTGETMGTTWAVRAVLARGQDGGGLEAGIRAVLDEV 61

Query: 77  IDEMSTWEADSLISRFNRAPAGSWHALPEDFFTVLDAALTMAVDSAGAFDPTVGPLVDLW 136
           I +MS W   S +SRFNRA A +W  LPED FTVL AAL  A DS GA+DP+ GPLVDLW
Sbjct: 62  IAQMSNWSEISDLSRFNRADASAWVTLPEDCFTVLQAALDTARDSGGAYDPSAGPLVDLW 121

Query: 137 GFGAGSVQRDALRLPDPTLLESTRQRCGWQRLVFDRGQRKVQQAGGVHLDFSGIAKGYAV 196
           GFG    +  A   P    +   RQ CGWQR+  D   R+ +Q GG+ LDF  IAKG+AV
Sbjct: 122 GFGPAGKRHTA---PTADDVARARQHCGWQRIEIDPSARRARQPGGLSLDFCAIAKGFAV 178

Query: 197 DLVAQALRDCGCVSWLAEVGGELVGEGVKADGQPWWVALERPPADDSPG-----MVVALH 251
           D V++ L   G    L E+GGEL G+G+K DG PWW+ LE P A  +        +VAL 
Sbjct: 179 DAVSRYLLAQGVPHHLVEIGGELRGQGLKPDGMPWWIELESPSASATAAGGIRRTLVALL 238

Query: 252 GLAIATSGDYRRYVDHDGLRYAHTIDPRTGTPVRTALASVTVLHRQCMVADALATVLTVL 311
           GL+IATSGDYRRY +HDG RYAHTIDPRTG P   ALASVTVLHR+CM+ADAL+T LTVL
Sbjct: 239 GLSIATSGDYRRYFEHDGRRYAHTIDPRTGYPAAHALASVTVLHRECMMADALSTALTVL 298

Query: 312 GEEAGLSFARERGIAALFITREADGFRESLTPALAAM 348
           G EAG++FA  +G+AA F+ R   GF E +TPA AAM
Sbjct: 299 GPEAGITFATRQGLAARFLVRTPHGFDERVTPAFAAM 335