BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2066.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_299403.1| hypothetical protein Reut_B5213 [Ralstonia eutr... 358 6e-97 ref|YP_002008846.1| hypothetical protein RALTA_B2217 [Cupriavidu... 353 2e-95 ref|YP_004682580.1| ABC transporter permease [Cupriavidus necato... 351 5e-95 ref|YP_842014.1| ABC-type transporter, periplasmic component [Ra... 350 1e-94 ref|YP_001101618.1| putative signal peptide [Herminiimonas arsen... 335 3e-90 >ref|YP_299403.1| hypothetical protein Reut_B5213 [Ralstonia eutropha JMP134] gb|AAZ64559.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 274 Score = 358 bits (918), Expect = 6e-97, Method: Composition-based stats. Identities = 177/246 (71%), Positives = 205/246 (83%) Query: 31 HRQWLLPSATVLSGNEAWVTVDAAVSNDLFYFEHFPLRLDGLVVTGPEGKPVQAVNASTG 90 HRQWLLPSATVLSGN+ WVTVDAAVSNDLFYFEH PLRLD LVVTGP+G V+A NASTG Sbjct: 28 HRQWLLPSATVLSGNDTWVTVDAAVSNDLFYFEHVPLRLDNLVVTGPDGSAVKAENASTG 87 Query: 91 KYRSTFDVQLSQPGTYKIAVVNNGVFASYKVDGQQKRWRGTAETLAKEIPANATELKVTQ 150 +YRSTFD+ L+QPGTY++AVVN G+FASYK +GQ KRWRGTA+ AKE+PANA EL+VTQ Sbjct: 88 RYRSTFDLHLTQPGTYRVAVVNQGLFASYKENGQTKRWRGTADAFAKEVPANAQELQVTQ 147 Query: 151 MNSRVETFVTAGKPSKGALAPTGVGLELQPVTHPTDLVAGDTATFQLLLDGKPASDVEVE 210 RVE+FVT GKPS LA +G GLEL P+THP DLV+G TA+F+LLLDGKPAS+++V Sbjct: 148 AEGRVESFVTNGKPSSQGLAASGRGLELAPITHPNDLVSGGTASFRLLLDGKPASNLKVA 207 Query: 211 LVPGGIRYRDKLLDSKLKTDADGKFSVKWTGPGMYWMEASVSDQKTSLPQATQRRATYIA 270 +VPGGIRYRD+L + TDADGKFSVKW PGMYWMEA V D+KTS+ A RRATY Sbjct: 208 VVPGGIRYRDQLQEFSATTDADGKFSVKWPAPGMYWMEAEVRDEKTSVKAAKTRRATYAV 267 Query: 271 TIEVLP 276 T+EVLP Sbjct: 268 TVEVLP 273 >ref|YP_002008846.1| hypothetical protein RALTA_B2217 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72794.1| conserved hypothetical protein; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 279 Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 175/246 (71%), Positives = 202/246 (82%) Query: 31 HRQWLLPSATVLSGNEAWVTVDAAVSNDLFYFEHFPLRLDGLVVTGPEGKPVQAVNASTG 90 HRQWLLPSATVLSG++ WVTVDAAVSNDLFYFEH P+RLD L VT P+G V+A NA+TG Sbjct: 33 HRQWLLPSATVLSGSDPWVTVDAAVSNDLFYFEHVPMRLDNLQVTAPDGSAVKAENAATG 92 Query: 91 KYRSTFDVQLSQPGTYKIAVVNNGVFASYKVDGQQKRWRGTAETLAKEIPANATELKVTQ 150 KYRSTFD+ L+QPGTY++AVVNNG+FASYKVDGQ KRWRGTAET A IPANA +L+VTQ Sbjct: 93 KYRSTFDLHLTQPGTYRVAVVNNGLFASYKVDGQPKRWRGTAETFAGAIPANAQDLQVTQ 152 Query: 151 MNSRVETFVTAGKPSKGALAPTGVGLELQPVTHPTDLVAGDTATFQLLLDGKPASDVEVE 210 R+E+FVTAGKPS L G GLEL P+THP DLVAGDTA+F+LLLDGKPAS+++V Sbjct: 153 AEGRIESFVTAGKPSDKGLRTVGRGLELAPITHPNDLVAGDTASFRLLLDGKPASNLKVA 212 Query: 211 LVPGGIRYRDKLLDSKLKTDADGKFSVKWTGPGMYWMEASVSDQKTSLPQATQRRATYIA 270 +VPGGIRYRD+L + TDA+GKFSVKW PGMYWMEA V D KT+ QA RRA Y Sbjct: 213 VVPGGIRYRDQLQEFSATTDAEGKFSVKWPAPGMYWMEAEVKDDKTTFKQARSRRAVYAV 272 Query: 271 TIEVLP 276 T+EVLP Sbjct: 273 TLEVLP 278 >ref|YP_004682580.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI81348.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 279 Score = 351 bits (901), Expect = 5e-95, Method: Composition-based stats. Identities = 173/245 (70%), Positives = 201/245 (82%) Query: 32 RQWLLPSATVLSGNEAWVTVDAAVSNDLFYFEHFPLRLDGLVVTGPEGKPVQAVNASTGK 91 RQWLLPSATVLSG++ WVTVDAAVSNDLFYFEH P+RLD L VT P+G V+A NA+TGK Sbjct: 34 RQWLLPSATVLSGSDPWVTVDAAVSNDLFYFEHVPMRLDNLQVTAPDGSAVKAENAATGK 93 Query: 92 YRSTFDVQLSQPGTYKIAVVNNGVFASYKVDGQQKRWRGTAETLAKEIPANATELKVTQM 151 YRSTFD+ L+QPGTY++AVVNNG+FASYKVDGQ KRWRGTAE A+E+PANA +L+VTQ Sbjct: 94 YRSTFDLHLTQPGTYRVAVVNNGLFASYKVDGQAKRWRGTAENFAREVPANAQDLQVTQA 153 Query: 152 NSRVETFVTAGKPSKGALAPTGVGLELQPVTHPTDLVAGDTATFQLLLDGKPASDVEVEL 211 R+E+FVTAGKPS L G GLEL P+THP DLVAGDTA+F+LLLDGKPAS+++V + Sbjct: 154 EGRIESFVTAGKPSDKGLRTVGRGLELAPITHPNDLVAGDTASFRLLLDGKPASNLKVSV 213 Query: 212 VPGGIRYRDKLLDSKLKTDADGKFSVKWTGPGMYWMEASVSDQKTSLPQATQRRATYIAT 271 VPGGIRYRD+L + TDADGKFSVKW GMYWMEA V D KT+ QA RRA Y T Sbjct: 214 VPGGIRYRDQLQEFSATTDADGKFSVKWPAAGMYWMEAEVKDDKTTFKQARSRRAVYAVT 273 Query: 272 IEVLP 276 +EVLP Sbjct: 274 VEVLP 278 >ref|YP_842014.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] emb|CAJ97284.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] Length = 279 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 171/245 (69%), Positives = 201/245 (82%) Query: 32 RQWLLPSATVLSGNEAWVTVDAAVSNDLFYFEHFPLRLDGLVVTGPEGKPVQAVNASTGK 91 RQWLLPSATVLSG++ WVTVDAAVSNDLFYFEH P+RLD L VT P+G V+A NA+TGK Sbjct: 34 RQWLLPSATVLSGSDPWVTVDAAVSNDLFYFEHVPMRLDNLQVTAPDGSAVKAENAATGK 93 Query: 92 YRSTFDVQLSQPGTYKIAVVNNGVFASYKVDGQQKRWRGTAETLAKEIPANATELKVTQM 151 YRSTFD+ L+QPGTY++AVVNNG+FASYKVDGQ KRWRG+AE AKE+PANA +L+ TQ Sbjct: 94 YRSTFDLHLTQPGTYRVAVVNNGLFASYKVDGQAKRWRGSAENFAKEVPANAQDLQATQA 153 Query: 152 NSRVETFVTAGKPSKGALAPTGVGLELQPVTHPTDLVAGDTATFQLLLDGKPASDVEVEL 211 R+E+F+TAGKPS L G GLEL P+THP DLVAGDTA+F++LLDGKPAS+++V + Sbjct: 154 EGRIESFITAGKPSDKGLRTAGRGLELAPITHPNDLVAGDTASFRMLLDGKPASNLKVSV 213 Query: 212 VPGGIRYRDKLLDSKLKTDADGKFSVKWTGPGMYWMEASVSDQKTSLPQATQRRATYIAT 271 VPGGIRYRD+L + TDADGKFSVKW PGMYWMEA V D KT+ QA RRA Y T Sbjct: 214 VPGGIRYRDQLQEFSATTDADGKFSVKWPAPGMYWMEAEVKDDKTTFKQAKSRRAVYAVT 273 Query: 272 IEVLP 276 +EVLP Sbjct: 274 VEVLP 278 >ref|YP_001101618.1| putative signal peptide [Herminiimonas arsenicoxydans] emb|CAL63497.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 285 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 172/276 (62%), Positives = 213/276 (77%), Gaps = 14/276 (5%) Query: 14 KIAALA--LAISLPLSAHAHRQWLLPSATVLSGNEAWVTVDAAVSNDLFYFEHFPLRLDG 71 ++AALA L+++LP+SAHAHR W+LPSATVLSGNE WVTVDAAVSNDLFYFEH PLRLD Sbjct: 8 RVAALAVSLSVALPMSAHAHRSWMLPSATVLSGNEPWVTVDAAVSNDLFYFEHNPLRLDN 67 Query: 72 LVVTGPEGKPVQAVNASTGKYRSTFDVQLSQPGTYKIAVVNNGVFASYKVDGQQKRWRGT 131 L V P+GK V+A N STGKYRSTFDV+L+Q GTYK+ +VN+G+ ASYKV + KRWRGT Sbjct: 68 LAVIAPDGKTVEAENKSTGKYRSTFDVKLTQKGTYKLTMVNDGLSASYKVGTENKRWRGT 127 Query: 132 AETLAKEIPANATELKVTQMNSRVETFVTAGKPSKGALAPTGVGLELQPVTHPTDLVAGD 191 AE+ AK+IPA+A ++ V++M SR+E FV++GKP+ L PTG GLEL P+THP DL AGD Sbjct: 128 AESFAKDIPADAKDVSVSRMQSRMEVFVSSGKPNDTVLKPTGAGLELVPITHPNDLFAGD 187 Query: 192 TATFQLLLDGKPASDVEVELVPGGIRYRDKLLDSKLKTDADGKFSVKWTGPGMYWMEASV 251 T+ F+ +LDGKPA+D+EV L+PGGIRYRD+L + K+KTD DGKFSVKW GMYWM AS Sbjct: 188 TSNFRFMLDGKPAADIEVTLIPGGIRYRDQLGEIKVKTDKDGKFSVKWPTAGMYWMSASN 247 Query: 252 SDQK------TSLPQATQ------RRATYIATIEVL 275 + + PQA RR +Y AT+EVL Sbjct: 248 GGARMEGGAANAAPQAVGTIAKPIRRVSYSATLEVL 283