BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2064.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_587768.1| hypothetical protein Rmet_5640 [Cupriavidus met... 278 6e-73 ref|YP_004682582.1| hypothetical protein CNE_2c24030 [Cupriavidu... 270 1e-70 ref|YP_002008848.1| hypothetical protein RALTA_B2219 [Cupriavidu... 268 5e-70 ref|YP_004486945.1| PepSY-associated TM helix domain-containing ... 266 1e-69 ref|YP_001566071.1| PepSY-associated TM helix domain-containing ... 266 2e-69 >ref|YP_587768.1| hypothetical protein Rmet_5640 [Cupriavidus metallidurans CH34] gb|ABF12499.1| conserved hypothetical protein; putative membrane protein with PepSY-associated TM helix [Cupriavidus metallidurans CH34] Length = 223 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 137/216 (63%), Positives = 161/216 (74%), Gaps = 6/216 (2%) Query: 13 ADQKRRAFWLKHLHQWHWISSGICLVAMLVFAATGLTLNHAAQIEAKPQVTHRKATLPES 72 + Q+RRAFWLKHLHQWHWISS ICL+ ML+FA TG TLNHA QIEA P V R T P Sbjct: 8 SSQQRRAFWLKHLHQWHWISSAICLIGMLMFAVTGFTLNHAGQIEASPSVVTRHETAPRE 67 Query: 73 LLAPLRQQAEAADAKGGSK------AALPSAVRDWVGRELAVTVDQQSAEWSADEVYVAL 126 LL L++ A A G K +P + DW+ + + + + AEWSADE+YV L Sbjct: 68 LLDALKRAAPANALAGNQKDQKDQKGPVPRVLADWLSKTMDIEAAGREAEWSADEIYVGL 127 Query: 127 PRPGGDAWLRVALEDGQVEYEKTDRGWISYFNDLHKGRNTGAAWSWFIDVFAVACLVFCI 186 PRPGGDAWL VALEDG+V+YE T RGWISYFNDLHKGRNTG AWSWFID+FA+ACL+F + Sbjct: 128 PRPGGDAWLSVALEDGEVQYEVTSRGWISYFNDLHKGRNTGHAWSWFIDIFALACLIFSV 187 Query: 187 TGLFLLQMHAGKRPATWPLVALGLVAPLLLALVFIH 222 TGLFLL++HAG R ATWPLV GLV PLLLA++FIH Sbjct: 188 TGLFLLKLHAGGRMATWPLVGAGLVVPLLLAILFIH 223 >ref|YP_004682582.1| hypothetical protein CNE_2c24030 [Cupriavidus necator N-1] gb|AEI81350.1| hypothetical membrane protein [Cupriavidus necator N-1] Length = 245 Score = 270 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 135/222 (60%), Positives = 167/222 (75%), Gaps = 1/222 (0%) Query: 2 KPAAAHSLPVVADQKRRAFWLKHLHQWHWISSGICLVAMLVFAATGLTLNHAAQIEAKPQ 61 +P A + Q+RRAFWLKHLHQWHWISS ICL+ ML+FA TG TLNHAAQIEA+P Sbjct: 24 RPTAMTETQPASGQQRRAFWLKHLHQWHWISSAICLIGMLLFAITGFTLNHAAQIEARPA 83 Query: 62 VTHRKATLPESLLAPLRQQAEAADAKG-GSKAALPSAVRDWVGRELAVTVDQQSAEWSAD 120 V R AT+P +L +R +A A DA+ KA +P+ + DW+ + L + + AEWSAD Sbjct: 84 VETRHATMPTRVLDQVRAEAPAGDAQAREKKAPVPAVLADWLAQALDIDASGREAEWSAD 143 Query: 121 EVYVALPRPGGDAWLRVALEDGQVEYEKTDRGWISYFNDLHKGRNTGAAWSWFIDVFAVA 180 E+YVALPRPGGDAW+ + L+ G+ +YEKT RG ISY NDLHKGRNTGAAWS F+DVFA+A Sbjct: 144 EIYVALPRPGGDAWVSLELDSGEAQYEKTTRGAISYLNDLHKGRNTGAAWSLFLDVFALA 203 Query: 181 CLVFCITGLFLLQMHAGKRPATWPLVALGLVAPLLLALVFIH 222 CLVF +TGLFLL++HA R TWPLV LGLV P+LLA++ IH Sbjct: 204 CLVFSVTGLFLLKLHAAGRVGTWPLVGLGLVVPVLLAILLIH 245 >ref|YP_002008848.1| hypothetical protein RALTA_B2219 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72796.1| Conserved hypothetical protein, transmembrane [Cupriavidus taiwanensis LMG 19424] Length = 218 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 133/211 (63%), Positives = 164/211 (77%), Gaps = 1/211 (0%) Query: 13 ADQKRRAFWLKHLHQWHWISSGICLVAMLVFAATGLTLNHAAQIEAKPQVTHRKATLPES 72 A Q+RRAFWLKHLHQWHWISS ICL+ ML+FA TG TLNHA QIEA+P V R+AT+P Sbjct: 8 AGQQRRAFWLKHLHQWHWISSAICLIGMLLFAVTGFTLNHAGQIEARPAVQTRQATVPTR 67 Query: 73 LLAPLRQQAEAADAKGG-SKAALPSAVRDWVGRELAVTVDQQSAEWSADEVYVALPRPGG 131 +L +R A + + ++A +P+ + DW+ + L V + AEWSADE+YVALPRPGG Sbjct: 68 VLDKVRAAAPSGAGQASETRAPVPAVLADWLAQSLQVDAGGREAEWSADEIYVALPRPGG 127 Query: 132 DAWLRVALEDGQVEYEKTDRGWISYFNDLHKGRNTGAAWSWFIDVFAVACLVFCITGLFL 191 DAW+ +AL+ G+ +YE T RG ISY NDLHKGRNTGAAWS F+D FA+ACLVFC+TGLFL Sbjct: 128 DAWVSIALDSGEAQYEHTSRGAISYLNDLHKGRNTGAAWSLFLDAFALACLVFCVTGLFL 187 Query: 192 LQMHAGKRPATWPLVALGLVAPLLLALVFIH 222 L++HAG R ATWPLV LGL PLLLA++FIH Sbjct: 188 LKLHAGGRVATWPLVGLGLAVPLLLAILFIH 218 >ref|YP_004486945.1| PepSY-associated TM helix domain-containing protein [Delftia sp. Cs1-4] gb|AEF88590.1| PepSY-associated TM helix domain protein [Delftia sp. Cs1-4] Length = 212 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 127/209 (60%), Positives = 166/209 (79%), Gaps = 3/209 (1%) Query: 14 DQKRRAFWLKHLHQWHWISSGICLVAMLVFAATGLTLNHAAQIEAKPQVTHRKATLPESL 73 D +RR++WLK LH+WHW+SS +CL+ ML+FA TG TLNHA QIE+KP++ +A LP++L Sbjct: 7 DPRRRSYWLKTLHEWHWVSSALCLIGMLLFAVTGFTLNHAGQIESKPRIVRGEAALPDAL 66 Query: 74 LAPLRQQAEAADAKGGSKAALPSAVRDWVGRELAVTVDQQSAEWSADEVYVALPRPGGDA 133 L QQ +A+ + +A +P+ DWV + + + + AEW+ADE+YV+LPRPGGDA Sbjct: 67 RVQLVQQ-QASQPR--DRAPVPAPFADWVRGQWGLEAEGREAEWTADELYVSLPRPGGDA 123 Query: 134 WLRVALEDGQVEYEKTDRGWISYFNDLHKGRNTGAAWSWFIDVFAVACLVFCITGLFLLQ 193 W+RVAL DG+ EYE+TDRGWI+Y NDLHKGRNTGAAWSWFID+FA ACLVF +TGLF+L+ Sbjct: 124 WVRVALADGEAEYERTDRGWIAYLNDLHKGRNTGAAWSWFIDIFAAACLVFTVTGLFILK 183 Query: 194 MHAGKRPATWPLVALGLVAPLLLALVFIH 222 MHAG RP TWP+V +GLV P+LLAL+ IH Sbjct: 184 MHAGNRPFTWPMVGMGLVIPMLLALLLIH 212 >ref|YP_001566071.1| PepSY-associated TM helix domain-containing protein [Delftia acidovorans SPH-1] gb|ABX37686.1| PepSY-associated TM helix domain protein [Delftia acidovorans SPH-1] Length = 212 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 126/209 (60%), Positives = 166/209 (79%), Gaps = 3/209 (1%) Query: 14 DQKRRAFWLKHLHQWHWISSGICLVAMLVFAATGLTLNHAAQIEAKPQVTHRKATLPESL 73 D +RR++WLK LH+WHW+SS +CL+ ML+FA TG TLNHA QIE++P++ +A LP++L Sbjct: 7 DPRRRSYWLKTLHEWHWVSSALCLIGMLLFAVTGFTLNHAGQIESRPRIVRGEAALPDAL 66 Query: 74 LAPLRQQAEAADAKGGSKAALPSAVRDWVGRELAVTVDQQSAEWSADEVYVALPRPGGDA 133 L QQ +A+ + +A +P+ DWV + + + + AEW+ADE+YV+LPRPGGDA Sbjct: 67 RVQLVQQ-QASQPR--DRAPVPAPFADWVRGQWGLEAEGREAEWTADELYVSLPRPGGDA 123 Query: 134 WLRVALEDGQVEYEKTDRGWISYFNDLHKGRNTGAAWSWFIDVFAVACLVFCITGLFLLQ 193 W+RVAL DG+ EYE+TDRGWI+Y NDLHKGRNTGAAWSWFID+FA ACLVF +TGLF+L+ Sbjct: 124 WVRVALADGEAEYERTDRGWIAYLNDLHKGRNTGAAWSWFIDIFAAACLVFTVTGLFILK 183 Query: 194 MHAGKRPATWPLVALGLVAPLLLALVFIH 222 MHAG RP TWP+V +GLV P+LLAL+ IH Sbjct: 184 MHAGNRPFTWPMVGMGLVIPMLLALLLIH 212