BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2062.p         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777289.1| threonine dehydratase [Herbaspirillum serope...   139   2e-31
ref|YP_004751283.1| threonine dehydratase biosynthetic [Collimon...   121   3e-26
ref|ZP_08275038.1| Threonine dehydratase biosynthetic [Oxalobact...   120   9e-26
ref|YP_001101096.1| threonine deaminase [Herminiimonas arsenicox...   119   2e-25
ref|YP_001354806.1| threonine dehydratase [Janthinobacterium sp....   119   2e-25

>ref|YP_003777289.1| threonine dehydratase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65381.1| threonine dehydratase protein [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 4  MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 63
          MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA
Sbjct: 1  MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 60

Query: 64 HLTPAQLKR 72
          HLTPAQLKR
Sbjct: 61 HLTPAQLKR 69


>ref|YP_004751283.1| threonine dehydratase biosynthetic [Collimonas fungivorans
          Ter331]
 gb|AEK60460.1| Threonine dehydratase biosynthetic [Collimonas fungivorans
          Ter331]
          Length = 508

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/69 (86%), Positives = 65/69 (94%)

Query: 4  MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 63
          M+ DYL+KILTARVYDVA ETPLELA TLS+RI+N+IYFKREDMQSVFSFKLRGAYNKMA
Sbjct: 1  MTTDYLQKILTARVYDVAVETPLELAPTLSKRIENQIYFKREDMQSVFSFKLRGAYNKMA 60

Query: 64 HLTPAQLKR 72
           LTPAQLKR
Sbjct: 61 SLTPAQLKR 69


>ref|ZP_08275038.1| Threonine dehydratase biosynthetic [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF31494.1| Threonine dehydratase biosynthetic [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 508

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 60/69 (86%), Positives = 63/69 (91%)

Query: 4  MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 63
          M+ DYL+KIL ARVYDVA ETPLELA TLSQRI NRIYFKREDMQSVFSFKLRGAYNKMA
Sbjct: 1  MTIDYLQKILNARVYDVAVETPLELAPTLSQRIGNRIYFKREDMQSVFSFKLRGAYNKMA 60

Query: 64 HLTPAQLKR 72
          HL PAQ+KR
Sbjct: 61 HLPPAQMKR 69


>ref|YP_001101096.1| threonine deaminase [Herminiimonas arsenicoxydans]
 emb|CAL62975.1| Threonine dehydratase biosynthetic (Threonine deaminase)
          [Herminiimonas arsenicoxydans]
          Length = 507

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/69 (84%), Positives = 63/69 (91%)

Query: 4  MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 63
          M+ DYLKKILTARVYDVA E+PLELA TLSQR  N+IYFKRED+QSVFSFKLRGAYNKMA
Sbjct: 1  MTTDYLKKILTARVYDVAVESPLELAPTLSQRFGNQIYFKREDIQSVFSFKLRGAYNKMA 60

Query: 64 HLTPAQLKR 72
          HL PAQ+KR
Sbjct: 61 HLPPAQMKR 69


>ref|YP_001354806.1| threonine dehydratase [Janthinobacterium sp. Marseille]
 gb|ABR88443.1| threonine dehydratase [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/69 (84%), Positives = 64/69 (92%)

Query: 4  MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 63
          M+ DYLKKILTARVYDVA E+PLELA TLSQR+ N+IYFKRED+QSVFSFKLRGAYNKMA
Sbjct: 1  MTTDYLKKILTARVYDVAVESPLELAPTLSQRVGNQIYFKREDIQSVFSFKLRGAYNKMA 60

Query: 64 HLTPAQLKR 72
          HL PAQ+KR
Sbjct: 61 HLPPAQMKR 69