BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2061.p         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777288.1| transmembrane protein [Herbaspirillum serope...   278   3e-73
ref|YP_004751284.1| hypothetical protein CFU_0625 [Collimonas fu...   226   1e-57
ref|ZP_04579945.1| conserved hypothetical protein [Oxalobacter f...   219   2e-55
ref|YP_001354805.1| hypothetical protein mma_3115 [Janthinobacte...   219   2e-55
ref|ZP_04577795.1| transmembrane protein [Oxalobacter formigenes...   217   5e-55

>ref|YP_003777288.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65380.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 163

 Score =  278 bits (710), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 157/163 (96%), Positives = 162/163 (99%)

Query: 18  MIESAVLWLLNILAIPTVGLTSVFLISFISATLLPLGSEPAVFAVIKASPEMFWPVILIA 77
           MIESAVLWLLNILAIPTVGLTSVFLISF+SATLLPLGSEPAVFAVIKASP+MFWPVILIA
Sbjct: 1   MIESAVLWLLNILAIPTVGLTSVFLISFVSATLLPLGSEPAVFAVIKASPDMFWPVILIA 60

Query: 78  TLGNTLGGIVDYWMGYGAKQAFAKERSSRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 137
           TLGNTLGGIVDYWMGYGAKQAFAKERS+RWFHWLERFGAKTMLLAWLPGIGDPICTLAGW
Sbjct: 61  TLGNTLGGIVDYWMGYGAKQAFAKERSTRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 120

Query: 138 LRLPFWPSVFYMAIGKFIRYVLMTWLLLNVPDGFWHKLGDWLA 180
           LRLPFWPSV YMAIGKFIRYVLMTWLLLNVPDGFWH++GDWLA
Sbjct: 121 LRLPFWPSVVYMAIGKFIRYVLMTWLLLNVPDGFWHRVGDWLA 163


>ref|YP_004751284.1| hypothetical protein CFU_0625 [Collimonas fungivorans Ter331]
 gb|AEK60461.1| conserved hypothetical protein; putative integral membrane protein
           [Collimonas fungivorans Ter331]
          Length = 177

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 131/163 (80%), Positives = 147/163 (90%)

Query: 18  MIESAVLWLLNILAIPTVGLTSVFLISFISATLLPLGSEPAVFAVIKASPEMFWPVILIA 77
           MIESAVLWLL  LA+PTVGLTSVF+ISF++ATLLPLGSEPAVFAVIKA+  +FWPVI +A
Sbjct: 15  MIESAVLWLLKTLAVPTVGLTSVFIISFVAATLLPLGSEPAVFAVIKANGALFWPVIFVA 74

Query: 78  TLGNTLGGIVDYWMGYGAKQAFAKERSSRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 137
           T GNTLGG+VDYWMGYGAKQAF++ER S WF WLER+GAKTMLLAW+PGIGDPICTL GW
Sbjct: 75  TAGNTLGGMVDYWMGYGAKQAFSRERGSSWFSWLERYGAKTMLLAWVPGIGDPICTLGGW 134

Query: 138 LRLPFWPSVFYMAIGKFIRYVLMTWLLLNVPDGFWHKLGDWLA 180
           L+LPFWPSV YMAIGKF RYVL+ WLLLNVPDGFW ++  WLA
Sbjct: 135 LKLPFWPSVMYMAIGKFARYVLVVWLLLNVPDGFWRQVASWLA 177


>ref|ZP_04579945.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gb|EEO30918.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 163

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 114/163 (69%), Positives = 142/163 (87%)

Query: 18  MIESAVLWLLNILAIPTVGLTSVFLISFISATLLPLGSEPAVFAVIKASPEMFWPVILIA 77
           M+ESAV WL++ LAIP +GLTSVF+I F+SATLLP+GSEPAVFAVI +SP MFWPV+++A
Sbjct: 1   MVESAVHWLMSYLAIPEIGLTSVFIICFVSATLLPMGSEPAVFAVIASSPSMFWPVMIVA 60

Query: 78  TLGNTLGGIVDYWMGYGAKQAFAKERSSRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 137
           T+GNTLGGI++YW+GYGAK+AFA+ER +RWF WLE++GAKTMLL W+PGIGDP+CTL GW
Sbjct: 61  TIGNTLGGILNYWIGYGAKEAFARERKTRWFGWLEKYGAKTMLLGWMPGIGDPLCTLGGW 120

Query: 138 LRLPFWPSVFYMAIGKFIRYVLMTWLLLNVPDGFWHKLGDWLA 180
           L+LPFWP V+YM IGKFIRY+LMTWLLL +P+  W +    L 
Sbjct: 121 LKLPFWPCVWYMTIGKFIRYLLMTWLLLYIPNETWREFARLLG 163


>ref|YP_001354805.1| hypothetical protein mma_3115 [Janthinobacterium sp. Marseille]
 gb|ABR90382.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 121/159 (76%), Positives = 137/159 (86%)

Query: 18  MIESAVLWLLNILAIPTVGLTSVFLISFISATLLPLGSEPAVFAVIKASPEMFWPVILIA 77
           MIESAV W+L  LA P VGL SVF+ISFISATLLPLGSEPAVFAV+K++ ++FWP +L+A
Sbjct: 1   MIESAVQWVLVTLAAPEVGLLSVFIISFISATLLPLGSEPAVFAVVKSNIDLFWPALLVA 60

Query: 78  TLGNTLGGIVDYWMGYGAKQAFAKERSSRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 137
           T GNTLGG V+YWMG GAKQ FAKER +RWF WLERFGAKTMLLAWLPGIGDP+C LAGW
Sbjct: 61  TAGNTLGGAVNYWMGLGAKQVFAKERQTRWFGWLERFGAKTMLLAWLPGIGDPLCLLAGW 120

Query: 138 LRLPFWPSVFYMAIGKFIRYVLMTWLLLNVPDGFWHKLG 176
           L+LPFWP V YMAIGKF+RY+ MTWLLL +PDGFW  L 
Sbjct: 121 LKLPFWPCVLYMAIGKFLRYLTMTWLLLYIPDGFWQYLA 159


>ref|ZP_04577795.1| transmembrane protein [Oxalobacter formigenes HOxBLS]
 gb|EEO28757.1| transmembrane protein [Oxalobacter formigenes HOxBLS]
          Length = 163

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 119/163 (73%), Positives = 139/163 (85%)

Query: 18  MIESAVLWLLNILAIPTVGLTSVFLISFISATLLPLGSEPAVFAVIKASPEMFWPVILIA 77
           MIESAV WLL+ LAIP VGLTSVFLISFISATLLPLGSEPAVFAV+ A   +FW V+ +A
Sbjct: 1   MIESAVHWLLSYLAIPEVGLTSVFLISFISATLLPLGSEPAVFAVVAADKSLFWQVMAVA 60

Query: 78  TLGNTLGGIVDYWMGYGAKQAFAKERSSRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 137
             GNTLGGI++YW+G+GAK+AFAKER +RWF WLE++GAKTMLL W+PGIGDP+CTLAGW
Sbjct: 61  AAGNTLGGILNYWIGFGAKKAFAKERETRWFGWLEKYGAKTMLLGWMPGIGDPLCTLAGW 120

Query: 138 LRLPFWPSVFYMAIGKFIRYVLMTWLLLNVPDGFWHKLGDWLA 180
           L+LPFWP V YMAIGK  RYVLMTWLLL++PD  W +L  +L 
Sbjct: 121 LKLPFWPCVAYMAIGKLARYVLMTWLLLHIPDSSWRELARFLG 163