BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2056.p         (167 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777285.1| hypothetical protein Hsero_3904 [Herbaspiril...   251   4e-65
ref|YP_001354802.1| hypothetical protein mma_3112 [Janthinobacte...   193   7e-48
ref|YP_004751290.1| hypothetical protein CFU_0631 [Collimonas fu...   189   8e-47
ref|YP_001101092.1| hypothetical protein HEAR2857 [Herminiimonas...   189   1e-46
ref|YP_001021925.1| hypothetical protein Mpe_A2736 [Methylibium ...   169   1e-40

>ref|YP_003777285.1| hypothetical protein Hsero_3904 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65377.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score =  251 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/128 (96%), Positives = 127/128 (99%)

Query: 27  MSAPSSPVPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVLSPSAEVRGHGPGQEVLQTG 86
           MSAPSSPVPVSFKVRKLSRVVEVEFDDGVM++LPFELMRV SPSAEVRGHGPGQEVLQTG
Sbjct: 1   MSAPSSPVPVSFKVRKLSRVVEVEFDDGVMYALPFELMRVYSPSAEVRGHGPGQEVLQTG 60

Query: 87  KRDVEIHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGRDQAALWEAYLQKLEAAGFTR 146
           KR+VEIHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGRDQAALWEAYLQKLEAAGFTR
Sbjct: 61  KREVEIHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGRDQAALWEAYLQKLEAAGFTR 120

Query: 147 ESGRDHQP 154
           +SGRDHQP
Sbjct: 121 DSGRDHQP 128


>ref|YP_001354802.1| hypothetical protein mma_3112 [Janthinobacterium sp. Marseille]
 gb|ABR90005.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 145

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 96/140 (68%), Positives = 111/140 (79%), Gaps = 5/140 (3%)

Query: 30  PSSPVPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVLSPSAEVRGHGPGQEVLQTGKRD 89
           P +P P    VRK SRV+E+EFDDG  FSLPFELMRV SPSAEVRGHGPGQE LQTG+R+
Sbjct: 8   PPAPQPTGLTVRKQSRVLEIEFDDGAAFSLPFELMRVWSPSAEVRGHGPGQETLQTGQRN 67

Query: 90  VEIHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGRDQAALWEAYLQKLEAAGFTRESG 149
           VEI G+EPVGNY +KP FSDGH +GIF+W+YLY LG D+ ALWE YL++LEAAGFTRESG
Sbjct: 68  VEITGVEPVGNYAIKPSFSDGHDTGIFSWEYLYHLGTDKDALWEDYLRRLEAAGFTRESG 127

Query: 150 RD---HQPVEGGNAHACGHH 166
           RD    + V GG+   CG H
Sbjct: 128 RDAPMSKAVTGGS--GCGSH 145


>ref|YP_004751290.1| hypothetical protein CFU_0631 [Collimonas fungivorans Ter331]
 gb|AEK60467.1| hypothetical protein CFU_0631 [Collimonas fungivorans Ter331]
          Length = 143

 Score =  189 bits (481), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 99/143 (69%), Positives = 111/143 (77%), Gaps = 4/143 (2%)

Query: 24  GEPMSAPSSPVPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVLSPSAEVRGHGPGQEVL 83
           G   SAP+ PVPVSF V K S  +EV FDDG +FSLPFELMRV SPSAEV GHGPGQEVL
Sbjct: 3   GSKQSAPA-PVPVSFTVHKQSCKLEVAFDDGAVFSLPFELMRVYSPSAEVSGHGPGQEVL 61

Query: 84  QTGKRDVEIHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGRDQAALWEAYLQKLEAAG 143
           QTGKR+VE+  +EPVGNY VKP FSDGH SGI+TW YLY+LGRDQ A+WE YL++LEAAG
Sbjct: 62  QTGKRNVEMAALEPVGNYAVKPTFSDGHVSGIYTWAYLYKLGRDQEAMWEDYLKRLEAAG 121

Query: 144 FTRESGRDHQPVEGGNA--HACG 164
            TRE GRD  P+   NA  H C 
Sbjct: 122 HTREGGRD-LPMTAKNAGGHGCA 143


>ref|YP_001101092.1| hypothetical protein HEAR2857 [Herminiimonas arsenicoxydans]
 emb|CAL62971.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 145

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/140 (65%), Positives = 112/140 (80%), Gaps = 5/140 (3%)

Query: 30  PSSPVPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVLSPSAEVRGHGPGQEVLQTGKRD 89
           P++P P    VRK SRV+E+EFDDG  FSLPFEL+RV SPSAEVRGHGPGQE LQTG+R+
Sbjct: 8   PAAPQPTGLTVRKQSRVLEIEFDDGAAFSLPFELLRVWSPSAEVRGHGPGQETLQTGQRN 67

Query: 90  VEIHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGRDQAALWEAYLQKLEAAGFTRESG 149
           VEI  +EPVGNY +KP+FSDGH +GIF+W+YL+ LG +Q ALWE YL++LEAAGFTRESG
Sbjct: 68  VEITAVEPVGNYAIKPVFSDGHDTGIFSWEYLHHLGTNQDALWEDYLRRLEAAGFTRESG 127

Query: 150 RD---HQPVEGGNAHACGHH 166
           RD   ++ V  G+   CG H
Sbjct: 128 RDAPMNKAVVSGS--GCGSH 145


>ref|YP_001021925.1| hypothetical protein Mpe_A2736 [Methylibium petroleiphilum PM1]
 gb|ABM95690.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 138

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/138 (59%), Positives = 99/138 (71%), Gaps = 5/138 (3%)

Query: 30  PSSPVPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVLSPSAEVRGHGPGQEVLQTGKRD 89
           P +P P +  V + SRV+E+ F DG  F LPFEL+RV SPSAEV+GHGPGQEVLQTGKR+
Sbjct: 6   PDTPTPTALTVHQQSRVLEIAFSDGAQFRLPFELLRVYSPSAEVQGHGPGQEVLQTGKRN 65

Query: 90  VEIHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGRDQAALWEAYLQKLEAAGFTRESG 149
           V+I  +EPVGNY V+P FSDGH SG+F WDYLY LGR Q  LW+AY  +L AAG  R++ 
Sbjct: 66  VDIVELEPVGNYAVQPTFSDGHNSGLFAWDYLYHLGRQQEQLWQAYEARLAAAGVDRDA- 124

Query: 150 RDHQPVEGGNAHACGHHH 167
               P+      ACGHHH
Sbjct: 125 ----PMVEAGGSACGHHH 138