BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2053.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777283.1| transmembrane protein [Herbaspirillum serope... 443 e-122 ref|YP_004751301.1| hypothetical protein CFU_0642 [Collimonas fu... 294 2e-77 ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacte... 249 3e-64 ref|ZP_04577798.1| conserved hypothetical protein [Oxalobacter f... 249 6e-64 ref|ZP_04579948.1| hypothetical protein OFBG_01949 [Oxalobacter ... 242 6e-62 >ref|YP_003777283.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65375.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 292/318 (91%), Positives = 301/318 (94%), Gaps = 2/318 (0%) Query: 1 MKKIFLALLLAITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSY-SQPSR 59 MKK+ LALLL+ITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPS+PS + P R Sbjct: 1 MKKLLLALLLSITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSSPSYSQPSATPYR 60 Query: 60 PAAPAAAPQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGALGGMLGSLLTIALLC 119 P+ PAA QSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGA+GG+LGSLLTIALLC Sbjct: 61 PSTPAATLQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIALLC 120 Query: 120 AAVIFLIRLFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPAALPGA 179 AAVIFLIR+FARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPA L G Sbjct: 121 AAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPA-LQGN 179 Query: 180 GYAASAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAEL 239 Y A+AQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAEL Sbjct: 180 AYGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAEL 239 Query: 240 RMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDASAEPFAEIWNL 299 RMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPD SAEPFAEIWNL Sbjct: 240 RMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEIWNL 299 Query: 300 SKPLNGSGGWVLAGIQQV 317 SKPLNGSGGWVLAGIQQV Sbjct: 300 SKPLNGSGGWVLAGIQQV 317 >ref|YP_004751301.1| hypothetical protein CFU_0642 [Collimonas fungivorans Ter331] gb|AEK60478.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 309 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 192/324 (59%), Positives = 226/324 (69%), Gaps = 24/324 (7%) Query: 1 MKKIFLALLLAITSLSLIM---SPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSYSQP 57 MK+ L LL+ T+LSL M S A+A+RLGGGGSFGKQSS SRQA + + Sbjct: 1 MKRFLLVLLMVATTLSLTMLTISNADARRLGGGGSFGKQSSGISRQAPSQPTQNFGNANQ 60 Query: 58 SRPAAPAAAPQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGALGGMLGSLLTIAL 117 +RPA PAA PQ P PKPASPW+ +LGGALLG GLGALMSHFG+GGA G S L +AL Sbjct: 61 ARPATPAATPQGVP-PKPASPWKGILGGALLGLGLGALMSHFGMGGAFG----SFLMMAL 115 Query: 118 LCAAVIFLIRLFARGREAQNNNPAYATPMPGVSPIGS----AAGATPEIGSGLRDINPPP 173 L AVIF++RL R +N PA A SP S ++G TPEIGS + Sbjct: 116 LAVAVIFVVRLLMR---KSSNTPAPAAYSGANSPAASFDSNSSGFTPEIGSRINS----- 167 Query: 174 AALPGAGYAASAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTP 233 G + +SA WGIP+ FD GFVR+AKTYFIRLQAAWD+AD+NDIREFTTP Sbjct: 168 ----GPSFQSSAPAGHSAPWGIPDDFDVPGFVRSAKTYFIRLQAAWDKADINDIREFTTP 223 Query: 234 EMFAELRMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDASAEPF 293 EMF ELR+QL ERGA+PN TDVVQLD +L+GIET+ DYLA+V+F GLIKE P+ASAEPF Sbjct: 224 EMFGELRLQLQERGASPNNTDVVQLDGELMGIETIGSDYLASVKFTGLIKEVPEASAEPF 283 Query: 294 AEIWNLSKPLNGSGGWVLAGIQQV 317 E+WNLSKP G GGWVLAGIQQ+ Sbjct: 284 TEVWNLSKPQTGQGGWVLAGIQQI 307 >ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacterium sp. Marseille] gb|ABR90330.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 307 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 164/317 (51%), Positives = 211/317 (66%), Gaps = 11/317 (3%) Query: 1 MKKIFLALLLAITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSYSQPSRP 60 MKK+ LA+ + ++S++ I AEAKR+GGGGSFGKQS ++ R P+ S S + Sbjct: 1 MKKLLLAVAVMVSSMTFIAVEAEAKRMGGGGSFGKQSQSFQR---PAPAQSSSANASKPA 57 Query: 61 AAPAAAPQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGALGGMLGSLLTIALLCA 120 AAPAAA A S RN+LGGALLG GLGAL+SH GIGGA M+ ++L +ALL Sbjct: 58 AAPAAAGAGAAAAAKPSMMRNILGGALLGLGLGALLSHLGIGGAFASMISTILMVALLGF 117 Query: 121 AVIFLIRLFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPAALPGAG 180 A +F+ R+ N P++A SA +TP+IGSGL P+AL A Sbjct: 118 AAMFIYRMIKNKSAGNNAQPSFANGY-------SAKNSTPDIGSGLNQQYQQPSALQSAA 170 Query: 181 YAASAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAELR 240 AS + +P FD F+RNAKTYFIRLQAAWD+AD+NDIREFTTPEMFAEL+ Sbjct: 171 PMASGAAYEAVN-ELPADFDVESFIRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELK 229 Query: 241 MQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDASAEPFAEIWNLS 300 +QL ERGA PN TDVV L+ + G+ET+ DY+A+++F G+I+EA A EPF+E WNLS Sbjct: 230 LQLQERGATPNVTDVVTLNGEFYGVETVGNDYIASIKFTGMIREADHAPTEPFSEAWNLS 289 Query: 301 KPLNGSGGWVLAGIQQV 317 KP+NG+GGWVLAGIQQ+ Sbjct: 290 KPVNGNGGWVLAGIQQL 306 >ref|ZP_04577798.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gb|EEO28760.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 305 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 156/317 (49%), Positives = 205/317 (64%), Gaps = 13/317 (4%) Query: 1 MKKIFLALLLAITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSYSQPSRP 60 MKK LA +L S++M+ +A+RLGGG SFG+QSSN R A + Q + Sbjct: 1 MKKFLLAFVLVAGLASMVMTDVQARRLGGG-SFGRQSSNIGRIAPMQRNMAQPNQQAQQA 59 Query: 61 AAPAAAPQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGALGGMLGSLLTIALLCA 120 A Q+A +PAS W +LGGALLG GLGAL+SHFGIGG + GM+ ++L + ++ Sbjct: 60 QRAANQSQAANAARPASRWGGILGGALLGLGLGALLSHFGIGGDMAGMISTILMLVIIVY 119 Query: 121 AVIFLIRLFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPAALPGAG 180 V FL+R F++ R+ + + AYA+ G +TPEIGSGL P G Sbjct: 120 VVRFLLRRFSKRRQMEQDPTAYAS---NYRNTGYQHSSTPEIGSGL------PHQFQGNQ 170 Query: 181 YAASAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAELR 240 A A WGIP FD F+R AK+YFIR+QAAWD+ D+NDI EFTTPEMFAE+R Sbjct: 171 SGAGAVS---DTWGIPADFDVPAFLRAAKSYFIRMQAAWDKGDINDIHEFTTPEMFAEIR 227 Query: 241 MQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDASAEPFAEIWNLS 300 +QL ERG +PN TDVV LDA+LLGIET+ +Y+A+V+F G I+EA A AEPF E+WNL+ Sbjct: 228 LQLQERGDSPNVTDVVSLDAELLGIETLNDEYMASVKFSGKIREAESAPAEPFEEVWNLT 287 Query: 301 KPLNGSGGWVLAGIQQV 317 +P++ GWVLAGIQQ+ Sbjct: 288 RPISKKDGWVLAGIQQL 304 >ref|ZP_04579948.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13] gb|EEO30921.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13] Length = 305 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 154/317 (48%), Positives = 205/317 (64%), Gaps = 13/317 (4%) Query: 1 MKKIFLALLLAITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSYSQPSRP 60 MKK LA +L + S++M+ A+R GGG SFG+QSSN R AP S P+ Sbjct: 1 MKKFLLAFVLVASLSSMVMTDVHARRFGGG-SFGRQSSNIGR-IAPMQRSMPNQQAQQAQ 58 Query: 61 AAPAAAPQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGALGGMLGSLLTIALLCA 120 A + + +PAS W +LGGALLG GLGAL+SH GIGG GM+ ++L +AL+ Sbjct: 59 RAANQSQAANAA-RPASRWGGILGGALLGLGLGALLSHMGIGGDFAGMISTVLMLALIFF 117 Query: 121 AVIFLIRLFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPAALPGAG 180 A+ FL+R F GR + AYA+ + G +TPEIGSGL P G Sbjct: 118 AIRFLMRRFT-GRGKPQDQTAYASQY---NDNGYNQSSTPEIGSGL------PHQYAGNQ 167 Query: 181 YAASAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAELR 240 + Q WGIP FD F+R AK+Y+IR+QAAWD+AD++DI EFTTPEMFAE++ Sbjct: 168 TVNTGSGMQNDNWGIPVDFDVPAFLRAAKSYYIRMQAAWDKADIHDIHEFTTPEMFAEMK 227 Query: 241 MQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDASAEPFAEIWNLS 300 +QL ERG PN TDVV LDA+LLGIET+ +Y+A+V+F G+I+E+ A AEPFAE+WN++ Sbjct: 228 LQLQERGPGPNITDVVSLDAELLGIETLNNEYMASVKFSGMIRESEGAPAEPFAEVWNMT 287 Query: 301 KPLNGSGGWVLAGIQQV 317 +P++ GGWVLAGIQQ+ Sbjct: 288 RPISKEGGWVLAGIQQL 304