BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2049.p (499 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777280.1| major facilitator superfamily permease [Herb... 813 0.0 ref|YP_003908998.1| major facilitator superfamily protein [Burkh... 560 e-157 ref|YP_004230192.1| major facilitator superfamily protein [Burkh... 559 e-157 ref|ZP_02881617.1| major facilitator superfamily MFS_1 [Burkhold... 558 e-156 ref|ZP_06838766.1| major facilitator superfamily MFS_1 [Burkhold... 555 e-156 >ref|YP_003777280.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ65372.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 498 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 469/499 (93%), Positives = 478/499 (95%), Gaps = 1/499 (0%) Query: 1 MPAFRMVQPETTEAKNTVGINDTSLPDARVRMLPYIVAATFFMEYLDTTIIATALPQMAQ 60 MPAFRM PE+ +N V ND SL DARVRMLPYIVAATFFMEYLDTTIIATALPQMAQ Sbjct: 1 MPAFRMEHPES-RGENNVATNDNSLTDARVRMLPYIVAATFFMEYLDTTIIATALPQMAQ 59 Query: 61 SFGVGPNELSLGMTAYMLTLAVFIPISGWVADRFGSRTVFGIAIAIFTLASVLCGYSQNV 120 SFGVGPNELSLGMTAYMLTLAVFIPISGWVADRFGSRTVFG+AIAIFTLAS+LCG+SQNV Sbjct: 60 SFGVGPNELSLGMTAYMLTLAVFIPISGWVADRFGSRTVFGMAIAIFTLASILCGFSQNV 119 Query: 121 WEFTAARVLQGLGGAMMVPVGRMIVVRSTGKDRLMKAIATITWPAIVAPVVGPSIGGFIT 180 WEFTAARVLQGLGGAMMVPVGRMIVVRSTGKDRLMKAIATITWPAIVAPVVGPSIGGFIT Sbjct: 120 WEFTAARVLQGLGGAMMVPVGRMIVVRSTGKDRLMKAIATITWPAIVAPVVGPSIGGFIT 179 Query: 181 TYASWHWIFLMNVPFGFAAFIAVMRVVRNEHGHSKRPLDVIGFLLSGAALTSLLYGTEIA 240 TYASWHWIFLMNVPFG AAF AVM VVRNEHG SKRPLD++GFLLSGAALTSLLYGTEIA Sbjct: 180 TYASWHWIFLMNVPFGLAAFTAVMMVVRNEHGVSKRPLDLVGFLLSGAALTSLLYGTEIA 239 Query: 241 SHMESNIKVAAGFVALGVVLGYCAWRHMQRIEHPLLDFSNLRIPTYSVTVLTGSLTRIGV 300 SHMESNIKVA GFVALGVVLGY AWRHMQRIEHPLLDFSNLRIPTYSVTVLTGSLTRIGV Sbjct: 240 SHMESNIKVALGFVALGVVLGYGAWRHMQRIEHPLLDFSNLRIPTYSVTVLTGSLTRIGV 299 Query: 301 DAVPYLMPLMFQIGFGLTAFQSGLLLLATALGNLGMKAFTTRILQRFGFRSVAVNNAAIA 360 DAVPYLMPLMFQIGFGLTAFQSGLLLLATALGNLGMKAFTTRILQRFGFRSVAVNNAAIA Sbjct: 300 DAVPYLMPLMFQIGFGLTAFQSGLLLLATALGNLGMKAFTTRILQRFGFRSVAVNNAAIA 359 Query: 361 GCLIIACGLLTPGTPLPVILGVIFCYGLSRSMQFSTLATLAYADISDARKSSASTLWSVA 420 G LIIACGLLTP TPLPVILGVIFCYGLSRSMQFSTLATLAYADISDARKSSASTLWSVA Sbjct: 360 GGLIIACGLLTPATPLPVILGVIFCYGLSRSMQFSTLATLAYADISDARKSSASTLWSVA 419 Query: 421 QQMTIGMGIAFGALALRIAAAIRGEEIDATGAHFTLGDFQWAFAMAGVVTLISVIGYRGL 480 QQMTIGMGIAFGALALRIAAA+RGE IDA+GAHFTLGDFQWAFAMAGVVTLISVIGYRGL Sbjct: 420 QQMTIGMGIAFGALALRIAAALRGEAIDASGAHFTLGDFQWAFAMAGVVTLISVIGYRGL 479 Query: 481 ARDAGSNIGGGMRAAQSKR 499 ARDAGSNIGGGMRAA KR Sbjct: 480 ARDAGSNIGGGMRAAPGKR 498 >ref|YP_003908998.1| major facilitator superfamily protein [Burkholderia sp. CCGE1003] gb|ADN59707.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1003] Length = 479 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 321/467 (68%), Positives = 382/467 (81%), Gaps = 3/467 (0%) Query: 30 VRMLPYIVAATFFMEYLDTTIIATALPQMAQSFGVGPNELSLGMTAYMLTLAVFIPISGW 89 V LPYIVAATFFMEYLDTT+IATALPQMA SFGVGPN +SLGMTAYML LA+FIP SGW Sbjct: 11 VGWLPYIVAATFFMEYLDTTVIATALPQMAHSFGVGPNSISLGMTAYMLALAIFIPASGW 70 Query: 90 VADRFGSRTVFGIAIAIFTLASVLCGYSQNVWEFTAARVLQGLGGAMMVPVGRMIVVRST 149 VADR GSR VF AI +FT+AS+LCG SQNV EFTAAR+LQG+GGAMMVPVGR+IVVRST Sbjct: 71 VADRCGSRNVFFSAIGVFTVASILCGLSQNVAEFTAARLLQGIGGAMMVPVGRLIVVRST 130 Query: 150 GKDRLMKAIATITWPAIVAPVVGPSIGGFITTYASWHWIFLMNVPFGFAAFIAVMRVVRN 209 K R+M+AI+TITWPAI APVVGP IGGFITTYASW WIFL+NVPFG AA + +V N Sbjct: 131 EKSRMMQAISTITWPAIAAPVVGPPIGGFITTYASWRWIFLLNVPFGLAAMAVALAMVPN 190 Query: 210 EHGHSKRPLDVIGFLLSGAALTSLLYGTEIASHMESNIKVAAGFVALGVVLGYCAWRHMQ 269 G +RPLDV+G LLSG ALT++LYG E+AS N VA +A G+++G A++H + Sbjct: 191 LRGSERRPLDVVGLLLSGTALTAILYGAELASQPAENPWVAGAIIAAGLLVGVVAFQHAK 250 Query: 270 RIEHPLLDFSNLRIPTYSVTVLTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSGLLLLAT 329 R HPL+D S L+IPT+SVTV+TGS TRIG+ AVPYLMPL+FQ+GFGL+AF+SGLLLLA+ Sbjct: 251 RHPHPLIDVSTLKIPTFSVTVVTGSFTRIGIGAVPYLMPLLFQVGFGLSAFKSGLLLLAS 310 Query: 330 ALGNLGMKAFTTRILQRFGFRSVAVNNAAIAGCLIIACGLLTPGTPLPVILGVIFCYGLS 389 ALGNLGMKA TTRILQRFGFR V++ + +AG IIACGLLTP PL ++L V+F YG++ Sbjct: 311 ALGNLGMKALTTRILQRFGFRMVSIVDVTVAGIFIIACGLLTPEVPLALVLIVVFVYGVA 370 Query: 390 RSMQFSTLATLAYADISDARKSSASTLWSVAQQMTIGMGIAFGALALRIAAAIRGEEIDA 449 RSMQFSTLATLAYAD++ + S+ASTLWS A QMTIG+GIAFGA++LR AA GE Sbjct: 371 RSMQFSTLATLAYADVAQPQMSAASTLWSAAAQMTIGLGIAFGAVSLRAAAFFNGE---T 427 Query: 450 TGAHFTLGDFQWAFAMAGVVTLISVIGYRGLARDAGSNIGGGMRAAQ 496 +G FTL DF+ AF +AGV+TL+SVIGY GL+RDAG +IGGG R A+ Sbjct: 428 SGHAFTLDDFRLAFLLAGVLTLLSVIGYMGLSRDAGQSIGGGSRGAE 474 >ref|YP_004230192.1| major facilitator superfamily protein [Burkholderia sp. CCGE1001] gb|ADX57132.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1001] Length = 479 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 323/473 (68%), Positives = 383/473 (80%), Gaps = 3/473 (0%) Query: 24 SLPDARVRMLPYIVAATFFMEYLDTTIIATALPQMAQSFGVGPNELSLGMTAYMLTLAVF 83 S D V LPYIVAATFFMEYLDTT+IATALPQMA SFGVGPN +SLGMTAYML LA+F Sbjct: 5 SARDKHVGWLPYIVAATFFMEYLDTTVIATALPQMAHSFGVGPNSVSLGMTAYMLALAIF 64 Query: 84 IPISGWVADRFGSRTVFGIAIAIFTLASVLCGYSQNVWEFTAARVLQGLGGAMMVPVGRM 143 IP SGW+ADR GSRTVF AI +FT ASVLCG SQNV EFTAAR+LQG+GGAMMVPVGR+ Sbjct: 65 IPASGWIADRCGSRTVFFTAIGVFTAASVLCGLSQNVAEFTAARLLQGIGGAMMVPVGRL 124 Query: 144 IVVRSTGKDRLMKAIATITWPAIVAPVVGPSIGGFITTYASWHWIFLMNVPFGFAAFIAV 203 IVVRST K R+M+AI+TITWPAI APVVGP IGGFITTYASW WIFL+NVPFG AA Sbjct: 125 IVVRSTEKSRMMQAISTITWPAIAAPVVGPPIGGFITTYASWRWIFLLNVPFGLAAMAVA 184 Query: 204 MRVVRNEHGHSKRPLDVIGFLLSGAALTSLLYGTEIASHMESNIKVAAGFVALGVVLGYC 263 + +V N G ++PLDV+G LLSG ALT++LYG E+AS N +A +A G+V+G Sbjct: 185 LAMVPNLRGSERKPLDVVGLLLSGTALTAVLYGAELASQPAENPWIAGAIIAAGLVVGVV 244 Query: 264 AWRHMQRIEHPLLDFSNLRIPTYSVTVLTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSG 323 A++H +R HPL+D S L+IPT+SVTV+TGS TRIG+ AVPYLMPL+FQ+GFGL+AF+SG Sbjct: 245 AFQHAKRHPHPLIDVSTLKIPTFSVTVVTGSFTRIGIGAVPYLMPLLFQVGFGLSAFKSG 304 Query: 324 LLLLATALGNLGMKAFTTRILQRFGFRSVAVNNAAIAGCLIIACGLLTPGTPLPVILGVI 383 LLLLA+ALGNLGMKA TTRILQRFGFR V++ + +AG IIACGLLTP PL ++L V+ Sbjct: 305 LLLLASALGNLGMKALTTRILQRFGFRMVSIVDVTVAGIFIIACGLLTPEVPLALVLIVV 364 Query: 384 FCYGLSRSMQFSTLATLAYADISDARKSSASTLWSVAQQMTIGMGIAFGALALRIAAAIR 443 F YG++RSMQFSTLATLAYAD++ + S+ASTLWS A QMTIG+GIAFGA++LR AA Sbjct: 365 FVYGVARSMQFSTLATLAYADVAQPQMSAASTLWSAAAQMTIGLGIAFGAVSLRAAAFFN 424 Query: 444 GEEIDATGAHFTLGDFQWAFAMAGVVTLISVIGYRGLARDAGSNIGGGMRAAQ 496 G+ G FTL DF+ AF +AGV+TL+SVIGY GLARDAG +IGGG R A+ Sbjct: 425 GQ---TPGHVFTLDDFRLAFLLAGVLTLLSVIGYMGLARDAGQSIGGGSRGAE 474 >ref|ZP_02881617.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] gb|EDT13046.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] Length = 484 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 320/475 (67%), Positives = 383/475 (80%), Gaps = 2/475 (0%) Query: 24 SLPDARVRMLPYIVAATFFMEYLDTTIIATALPQMAQSFGVGPNELSLGMTAYMLTLAVF 83 S P V LPYIVAATFFMEYLDTT+IATALPQMA SFGVGPN +SLGMTAYML LA+F Sbjct: 5 SAPHKHVGWLPYIVAATFFMEYLDTTVIATALPQMAHSFGVGPNSVSLGMTAYMLALAIF 64 Query: 84 IPISGWVADRFGSRTVFGIAIAIFTLASVLCGYSQNVWEFTAARVLQGLGGAMMVPVGRM 143 IP SGW+ADR GSRTVF AI +FT+ASVLCG SQNV EFTAAR+LQG+GGAMMVPVGR+ Sbjct: 65 IPASGWIADRCGSRTVFFSAIGVFTVASVLCGLSQNVAEFTAARLLQGIGGAMMVPVGRL 124 Query: 144 IVVRSTGKDRLMKAIATITWPAIVAPVVGPSIGGFITTYASWHWIFLMNVPFGFAAFIAV 203 IVVRST K R+M+AI+TITWPAI APVVGP IGGFITTYASW WIFL+NVPFG AA Sbjct: 125 IVVRSTEKSRMMQAISTITWPAIAAPVVGPPIGGFITTYASWRWIFLLNVPFGLAAMAVA 184 Query: 204 MRVVRNEHGHSKRPLDVIGFLLSGAALTSLLYGTEIASHMESNIKVAAGFVALGVVLGYC 263 + +V N G ++PLD++G LLSG ALT++LYG E+AS N +A + G+++G Sbjct: 185 LAMVPNLRGSERKPLDLVGLLLSGTALTAILYGAELASQPAENPWIAGAIIIAGLLVGVV 244 Query: 264 AWRHMQRIEHPLLDFSNLRIPTYSVTVLTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSG 323 A++H +R HPL+D S L+IPT+SVTV+TGS TRIG+ AVPYLMPL+FQ+GFGL+AF+SG Sbjct: 245 AFQHAKRHPHPLIDVSTLKIPTFSVTVVTGSFTRIGIGAVPYLMPLLFQVGFGLSAFKSG 304 Query: 324 LLLLATALGNLGMKAFTTRILQRFGFRSVAVNNAAIAGCLIIACGLLTPGTPLPVILGVI 383 LLLLA+ALGNLGMKA TTRILQRFGFR V++ + +AG IIACGLLTP PL ++L V+ Sbjct: 305 LLLLASALGNLGMKALTTRILQRFGFRMVSIVDVTVAGIFIIACGLLTPEVPLALVLIVV 364 Query: 384 FCYGLSRSMQFSTLATLAYADISDARKSSASTLWSVAQQMTIGMGIAFGALALRIAAAIR 443 F YG++RSMQFSTLATLAYAD++ + S+ASTLWS A QMTIG+GIAFGA++LR AA Sbjct: 365 FVYGVARSMQFSTLATLAYADVAQPQMSAASTLWSAAAQMTIGLGIAFGAVSLRAAAFFN 424 Query: 444 GEEI--DATGAHFTLGDFQWAFAMAGVVTLISVIGYRGLARDAGSNIGGGMRAAQ 496 GE + G FTL DF+ AF +AGV+TL+SVIGY GLARDAG +IGGG R + Sbjct: 425 GETTGHETAGLVFTLDDFRLAFLLAGVLTLLSVIGYMGLARDAGQSIGGGSRGTE 479 >ref|ZP_06838766.1| major facilitator superfamily MFS_1 [Burkholderia sp. Ch1-1] gb|EFG73212.1| major facilitator superfamily MFS_1 [Burkholderia sp. Ch1-1] Length = 479 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 322/469 (68%), Positives = 380/469 (81%), Gaps = 3/469 (0%) Query: 28 ARVRMLPYIVAATFFMEYLDTTIIATALPQMAQSFGVGPNELSLGMTAYMLTLAVFIPIS 87 A V LPYIVAATFFMEYLDTT+IATALPQMA SFGVGPN LSLGMTAYML LA+FIP S Sbjct: 9 AHVGWLPYIVAATFFMEYLDTTVIATALPQMAHSFGVGPNSLSLGMTAYMLALAIFIPAS 68 Query: 88 GWVADRFGSRTVFGIAIAIFTLASVLCGYSQNVWEFTAARVLQGLGGAMMVPVGRMIVVR 147 GWVADR GSRTVF AI +FT+ASVLCG SQNV EFTAAR+LQG+GGAMMVPVGR+IVVR Sbjct: 69 GWVADRCGSRTVFFSAIGVFTVASVLCGLSQNVVEFTAARLLQGMGGAMMVPVGRLIVVR 128 Query: 148 STGKDRLMKAIATITWPAIVAPVVGPSIGGFITTYASWHWIFLMNVPFGFAAFIAVMRVV 207 ST K R+M+AI+TITWPAI APVVGP IGGFITTYASW WIFL+NVPFG AA + +V Sbjct: 129 STEKSRMMQAISTITWPAIAAPVVGPPIGGFITTYASWRWIFLLNVPFGLAAMAVALALV 188 Query: 208 RNEHGHSKRPLDVIGFLLSGAALTSLLYGTEIASHMESNIKVAAGFVALGVVLGYCAWRH 267 N G ++PLDV+G LLSGA LT++LYG E+AS N VA + G+++G A++ Sbjct: 189 PNLRGTERKPLDVVGLLLSGATLTAILYGAELASQPGENPWVAGAIILGGLLMGVVAFQQ 248 Query: 268 MQRIEHPLLDFSNLRIPTYSVTVLTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSGLLLL 327 +R HPL+D S L+IPT+SVTV+TGS TRIG+ AVPYLMPL+FQ+GFGL+AF+SGLLLL Sbjct: 249 AKRHPHPLVDVSTLKIPTFSVTVVTGSFTRIGIGAVPYLMPLLFQVGFGLSAFKSGLLLL 308 Query: 328 ATALGNLGMKAFTTRILQRFGFRSVAVNNAAIAGCLIIACGLLTPGTPLPVILGVIFCYG 387 A+ALGNLGMKA TTRILQR+GFR V++ + +AG IIACGLLTP PL ++L V+F YG Sbjct: 309 ASALGNLGMKALTTRILQRYGFRMVSIVDVTVAGVFIIACGLLTPNVPLMLVLFVVFVYG 368 Query: 388 LSRSMQFSTLATLAYADISDARKSSASTLWSVAQQMTIGMGIAFGALALRIAAAIRGEEI 447 ++RSMQFSTLATLAYAD++ + S+ASTLWS A QMTIG+GIAFGA++LR AA GE Sbjct: 369 VARSMQFSTLATLAYADVAQPQMSAASTLWSAAAQMTIGLGIAFGAVSLRAAAFFNGE-- 426 Query: 448 DATGAHFTLGDFQWAFAMAGVVTLISVIGYRGLARDAGSNIGGGMRAAQ 496 TG FTL DF+ AF AGVVTL+SV GY GLARDAG +IGGG R ++ Sbjct: 427 -TTGRIFTLDDFRLAFLFAGVVTLVSVTGYMGLARDAGQSIGGGSRGSE 474