BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2048.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777279.1| transcription regulator protein [Herbaspiril... 504 e-141 ref|YP_001353551.1| LysR family transcriptional regulator [Janth... 454 e-125 ref|YP_004750768.1| transcriptional regulator [Collimonas fungiv... 436 e-120 ref|YP_001345657.1| putative transcriptional regulator [Pseudomo... 433 e-119 ref|YP_004379918.1| LysR family transcriptional regulator [Pseud... 427 e-118 >ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65371.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 265/308 (86%), Positives = 284/308 (92%) Query: 1 MESLTSIECFVASAEAGSFSAAARRLGLTSAAVGKNVARLESNLGVRLFQRSTRSLSLTE 60 ME++TSIECFVA+A AGSFSAAAR+LGLTSAAVGKNVARLES+LGVRLF RSTR LSLTE Sbjct: 1 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVARLESSLGVRLFHRSTRKLSLTE 60 Query: 61 AGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIVPLLGGFMERYPA 120 AGERFL+EV GGL +I+SAVANLASA GQPAG LKVSMGTGFGR+YIVPLLG F+ RYP Sbjct: 61 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG 120 Query: 121 ISPDWYFDNRPVDLITEGFDAAIGGGIELPPGIVARELAPAHRVLLASPAYLASHPAIRT 180 I PDW+F+NRPVDLI+EGFDAAI GG EL PG+VARELAPAHRVLLASPAYL +HP + + Sbjct: 121 IQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAHPPLHS 180 Query: 181 PEDLAEHDGILIRSPQTGRVRPFSLRDHGGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 P DLAEH GILIRSPQTGRVRPFSLRD GQQAPVTLQQRMTMSDANAACEVAEAGLGIT Sbjct: 181 PADLAEHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 Query: 241 LVSMPHALLYLDRGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 LV+MPHAL YL+ GTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL Sbjct: 241 LVAMPHALPYLEGGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 Query: 301 AERFSAHR 308 AERFSA R Sbjct: 301 AERFSAQR 308 >ref|YP_001353551.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90109.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 307 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 227/306 (74%), Positives = 264/306 (86%) Query: 1 MESLTSIECFVASAEAGSFSAAARRLGLTSAAVGKNVARLESNLGVRLFQRSTRSLSLTE 60 ME+++SIECFV SAEAGSFS AARRLGLTSAAVGKNVARLE+NL VRLFQRSTR L+LTE Sbjct: 1 METMSSIECFVRSAEAGSFSEAARRLGLTSAAVGKNVARLEANLSVRLFQRSTRRLTLTE 60 Query: 61 AGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIVPLLGGFMERYPA 120 AGERFL EVSGGL+ IQSAVANLASADGQPAG LK+SMGTGFGR YIVPLLG F+ RYPA Sbjct: 61 AGERFLAEVSGGLAVIQSAVANLASADGQPAGTLKISMGTGFGRHYIVPLLGDFLTRYPA 120 Query: 121 ISPDWYFDNRPVDLITEGFDAAIGGGIELPPGIVARELAPAHRVLLASPAYLASHPAIRT 180 I+PDW+FDNR VD+I EGFDAAIGGG ELPPG+VAR L P+H +L+A+P Y +H + + Sbjct: 121 ITPDWHFDNRRVDMIAEGFDAAIGGGFELPPGVVARTLGPSHGILVAAPDYFDTHTPLAS 180 Query: 181 PEDLAEHDGILIRSPQTGRVRPFSLRDHGGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 P +L +HDGI IRSPQTGR+RP+SLR+ G +QAPV ++ RMTMSD +AACE A++GLGI Sbjct: 181 PSELGQHDGIFIRSPQTGRIRPWSLRNKGNEQAPVAMRVRMTMSDPDAACEAAQSGLGIA 240 Query: 241 LVSMPHALLYLDRGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 LVS+P+AL YL+ G L RVLPDWYVD G LSLYF A +LLPAKTRVFVD+VVEHFR E+ Sbjct: 241 LVSVPNALRYLESGRLKRVLPDWYVDIGTLSLYFPAQKLLPAKTRVFVDYVVEHFRTEKF 300 Query: 301 AERFSA 306 A+RFSA Sbjct: 301 AKRFSA 306 >ref|YP_004750768.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK59945.1| Transcriptional regulator [Collimonas fungivorans Ter331] Length = 307 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 226/306 (73%), Positives = 254/306 (83%) Query: 1 MESLTSIECFVASAEAGSFSAAARRLGLTSAAVGKNVARLESNLGVRLFQRSTRSLSLTE 60 ME++ ++CFV SAEAGSFS AARRLG+TSAAVGKNVARLE+ LGVRLF RSTRSL+LTE Sbjct: 1 METMIGMQCFVRSAEAGSFSEAARRLGMTSAAVGKNVARLETGLGVRLFHRSTRSLTLTE 60 Query: 61 AGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIVPLLGGFMERYPA 120 AGE FL E+ GL+SIQSAV NLASA GQPAGVLKVSMGTGFGR Y+VPLL F+E+YPA Sbjct: 61 AGESFLHEIRDGLTSIQSAVDNLASAGGQPAGVLKVSMGTGFGRVYMVPLLAPFLEKYPA 120 Query: 121 ISPDWYFDNRPVDLITEGFDAAIGGGIELPPGIVARELAPAHRVLLASPAYLASHPAIRT 180 ISPDW+FDNR VDLI +GFDAAIGGG ELPPG+VAREL PAHRVL+A+PAY PA + Sbjct: 121 ISPDWHFDNRQVDLIAQGFDAAIGGGFELPPGVVARELGPAHRVLVAAPAYFNERPAPAS 180 Query: 181 PEDLAEHDGILIRSPQTGRVRPFSLRDHGGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 P DL DGI IRSPQTGRVRP+ LR+ QQAPVTL+ RMTMSD AACE A+ GLGI Sbjct: 181 PADLHAFDGIFIRSPQTGRVRPWPLRNGSNQQAPVTLRVRMTMSDPEAACESAQMGLGIA 240 Query: 241 LVSMPHALLYLDRGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 LVS+P+AL +L TLVRVLPDWYVD G LSLYF A +LLPAKTRVFVD+VVEHFR + L Sbjct: 241 LVSVPNALPFLLNKTLVRVLPDWYVDGGTLSLYFAAQKLLPAKTRVFVDYVVEHFRTQEL 300 Query: 301 AERFSA 306 A FSA Sbjct: 301 ARHFSA 306 >ref|YP_001345657.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR84110.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 310 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 218/306 (71%), Positives = 249/306 (81%) Query: 1 MESLTSIECFVASAEAGSFSAAARRLGLTSAAVGKNVARLESNLGVRLFQRSTRSLSLTE 60 ME+L++I+CFV SAEAGSF+ AARRLGLT A VGKNVARLESNLGVRLFQRSTR L+LTE Sbjct: 1 METLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLALTE 60 Query: 61 AGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIVPLLGGFMERYPA 120 AGERFL+EV G L+ IQ+A+AN+++ QP+G LKVSMG FGR+YI+PLLG F+ERYP Sbjct: 61 AGERFLQEVGGSLAGIQTALANVSNVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPG 120 Query: 121 ISPDWYFDNRPVDLITEGFDAAIGGGIELPPGIVARELAPAHRVLLASPAYLASHPAIRT 180 I PDW+FDNR VDLI EGFDAAIGGG ELPPG+VAR L P H +LLASPAYL P IR Sbjct: 121 IVPDWHFDNRQVDLIGEGFDAAIGGGFELPPGVVARHLTPGHLILLASPAYLRDKPPIRH 180 Query: 181 PEDLAEHDGILIRSPQTGRVRPFSLRDHGGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 P DL + DGI IRSPQTGRVRP+ LR G+QAP+ L++RMTMSD A CEVA GLGIT Sbjct: 181 PGDLCDFDGIRIRSPQTGRVRPWPLRRRDGEQAPIELRERMTMSDPEATCEVAAMGLGIT 240 Query: 241 LVSMPHALLYLDRGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 LV M HA YL+ G LVRVLPDWYVD G SLY+ A RLLPAKTRVFVDFVV++FRR+ L Sbjct: 241 LVCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANRLLPAKTRVFVDFVVDYFRRQEL 300 Query: 301 AERFSA 306 A RF A Sbjct: 301 ARRFCA 306 >ref|YP_004379918.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB58166.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 316 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 222/308 (72%), Positives = 252/308 (81%) Query: 1 MESLTSIECFVASAEAGSFSAAARRLGLTSAAVGKNVARLESNLGVRLFQRSTRSLSLTE 60 ME+L+SIE FV +AEAGSF+ AARRLGL+ AAVGKNVARLES+LGVRLF RSTR L+LTE Sbjct: 1 METLSSIESFVRTAEAGSFAEAARRLGLSPAAVGKNVARLESSLGVRLFLRSTRRLTLTE 60 Query: 61 AGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIVPLLGGFMERYPA 120 AGERFL EVSGGL++IQ AVANLAS+ GQPAG LKVSMG FGR+YI+P L F+ RYPA Sbjct: 61 AGERFLAEVSGGLANIQGAVANLASSQGQPAGTLKVSMGVAFGRDYILPHLTDFLARYPA 120 Query: 121 ISPDWYFDNRPVDLITEGFDAAIGGGIELPPGIVARELAPAHRVLLASPAYLASHPAIRT 180 I+PDW+FDNR VDLI GFDAAIGGG ELPPG +AR+LAPAHRVLLA+P YLA H I Sbjct: 121 ITPDWHFDNRAVDLIGGGFDAAIGGGFELPPGAIARQLAPAHRVLLAAPVYLAKHAPITR 180 Query: 181 PEDLAEHDGILIRSPQTGRVRPFSLRDHGGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 PEDL +HDGILIRSPQTGRVR + LR QQA + L+QRMTM+D AAC A GLGIT Sbjct: 181 PEDLTQHDGILIRSPQTGRVRSWPLRTRDDQQATLELKQRMTMNDPEAACHAALQGLGIT 240 Query: 241 LVSMPHALLYLDRGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 LVS HAL YL RG++ VLPDWYVDTG LSLYF+A +LLPAKTRVF+DF+VE FR R Sbjct: 241 LVSTVHALPYLQRGSMQWVLPDWYVDTGSLSLYFSAQKLLPAKTRVFIDFIVERFREHRW 300 Query: 301 AERFSAHR 308 AERF A + Sbjct: 301 AERFDARK 308