BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2040.p         (221 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777271.1| ribulose-5-phosphate 3-epimerase [Herbaspiri...   413   e-114
ref|YP_001098565.1| ribulose-phosphate 3-epimerase [Herminiimona...   396   e-109
ref|YP_001351927.1| D-ribulose-5-phosphate 3-epimerase [Janthino...   390   e-107
ref|XP_002535323.1| ribulose-5-phosphate-3-epimerase, putative [...   381   e-104
ref|ZP_08274202.1| Ribulose-phosphate 3-epimerase [Oxalobacterac...   380   e-104

>ref|YP_003777271.1| ribulose-5-phosphate 3-epimerase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65363.1| ribulose-5-phosphate 3-epimerase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 221

 Score =  413 bits (1062), Expect = e-114,   Method: Composition-based stats.
 Identities = 218/221 (98%), Positives = 221/221 (100%)

Query: 1   MPTFRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60
           MPT+RIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV
Sbjct: 1   MPTYRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60

Query: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120
           QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT
Sbjct: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120

Query: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDESGRNILLEVDGGIK 180
           PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDESGR+ILLEVDGGIK
Sbjct: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDESGRDILLEVDGGIK 180

Query: 181 VENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV 221
           +ENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV
Sbjct: 181 IENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV 221


>ref|YP_001098565.1| ribulose-phosphate 3-epimerase [Herminiimonas arsenicoxydans]
 emb|CAL60436.1| Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase)
           (PPE) (R5P3E) [Herminiimonas arsenicoxydans]
          Length = 221

 Score =  396 bits (1018), Expect = e-109,   Method: Composition-based stats.
 Identities = 198/221 (89%), Positives = 213/221 (96%)

Query: 1   MPTFRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60
           MP++RIAPSILSADFARLGEEVRNVVAAGAD IHFDVMDNHYVPNLTIGPLVCEAIRPHV
Sbjct: 1   MPSYRIAPSILSADFARLGEEVRNVVAAGADIIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60

Query: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120
           QVPIDVHLMVKPVDRI+PDFAKAGAN+ITFHPEASEH+DR+LQLIRDNGCKAGLVFNP T
Sbjct: 61  QVPIDVHLMVKPVDRIVPDFAKAGANIITFHPEASEHVDRTLQLIRDNGCKAGLVFNPAT 120

Query: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDESGRNILLEVDGGIK 180
           PLHYL+HVMDKLD++L+MSVNPGFGGQSFIP  LKKIA VR+ IDESGR+I+LEVDGGIK
Sbjct: 121 PLHYLEHVMDKLDIILLMSVNPGFGGQSFIPHTLKKIAAVRKLIDESGRDIMLEVDGGIK 180

Query: 181 VENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV 221
           V+NI AAARAGADTFVAGSAIFGKPDYKAVIDAMR ELA+V
Sbjct: 181 VDNIEAAARAGADTFVAGSAIFGKPDYKAVIDAMRNELAKV 221


>ref|YP_001351927.1| D-ribulose-5-phosphate 3-epimerase [Janthinobacterium sp.
           Marseille]
 gb|ABR88980.1| D-ribulose-5-phosphate 3-epimerase [Janthinobacterium sp.
           Marseille]
          Length = 221

 Score =  390 bits (1002), Expect = e-107,   Method: Composition-based stats.
 Identities = 196/221 (88%), Positives = 212/221 (95%)

Query: 1   MPTFRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60
           MP +RIAPSILSADFARLGEEV NVVAAGAD IHFDVMDNHYVPNLTIGPLVCEAIRPHV
Sbjct: 1   MPNYRIAPSILSADFARLGEEVCNVVAAGADIIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60

Query: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120
           QVPIDVHLMVKPVDRIIPDFAKAGAN+ITFHPEASEHIDR+LQLIRDNGCKAGLVFNP T
Sbjct: 61  QVPIDVHLMVKPVDRIIPDFAKAGANIITFHPEASEHIDRTLQLIRDNGCKAGLVFNPAT 120

Query: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDESGRNILLEVDGGIK 180
           PL++L+HVMDKLD++L+MSVNPGFGGQSFIP  LKKIA VR+ IDESGR+I+LEVDGGIK
Sbjct: 121 PLNHLEHVMDKLDIILMMSVNPGFGGQSFIPHTLKKIAAVRKMIDESGRDIMLEVDGGIK 180

Query: 181 VENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV 221
           ++NI AAARAGADTFVAGSAIFGKPDYKAVIDAMR+ELA+V
Sbjct: 181 IDNIEAAARAGADTFVAGSAIFGKPDYKAVIDAMRSELAKV 221


>ref|XP_002535323.1| ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
 gb|EEF27061.1| ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
          Length = 228

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 202/223 (90%), Positives = 213/223 (95%), Gaps = 2/223 (0%)

Query: 1   MPTFRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60
           M T+RIAPSILSADFARLGEEVRNVVAAGAD IHFDVMDNHYVPNLTIGPLVC+AIRPHV
Sbjct: 1   MTTYRIAPSILSADFARLGEEVRNVVAAGADIIHFDVMDNHYVPNLTIGPLVCQAIRPHV 60

Query: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120
           QVPIDVHLMVKPVDRIIPDFAKAGA++ITFHPEASEHIDR+LQLIRDNGCKAGLVFNPGT
Sbjct: 61  QVPIDVHLMVKPVDRIIPDFAKAGADIITFHPEASEHIDRTLQLIRDNGCKAGLVFNPGT 120

Query: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDESGR--NILLEVDGG 178
           PLHYL+HVMDK+DMVLIMSVNPGFGGQSFIPEALKKIA  RR ID+SGR  +I+LEVDGG
Sbjct: 121 PLHYLEHVMDKIDMVLIMSVNPGFGGQSFIPEALKKIALARRMIDQSGRGSDIMLEVDGG 180

Query: 179 IKVENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV 221
           IK +NIAAAA AGADTFVAGSAIFGKPDYKAVIDAMRAELA V
Sbjct: 181 IKADNIAAAAEAGADTFVAGSAIFGKPDYKAVIDAMRAELAGV 223


>ref|ZP_08274202.1| Ribulose-phosphate 3-epimerase [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32338.1| Ribulose-phosphate 3-epimerase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 223

 Score =  380 bits (976), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/219 (89%), Positives = 210/219 (95%)

Query: 1   MPTFRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60
           MPT+ IAPSILSADFARLGEEVRNVV+AGAD IHFDVMDNHYVPNLTIGPLVC AIRPHV
Sbjct: 3   MPTYHIAPSILSADFARLGEEVRNVVSAGADIIHFDVMDNHYVPNLTIGPLVCAAIRPHV 62

Query: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120
           QVPIDVHLMVKPVDR+IPDFAKAGAN+I+FHPEASEHIDR+LQLIRDNGCKAGLVFNPGT
Sbjct: 63  QVPIDVHLMVKPVDRLIPDFAKAGANIISFHPEASEHIDRTLQLIRDNGCKAGLVFNPGT 122

Query: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDESGRNILLEVDGGIK 180
           PLH+LDHVMDK+D++LIMSVNPGFGGQSFIPEALKKIA VR+ IDESGR ILLEVDGGIK
Sbjct: 123 PLHFLDHVMDKIDLILIMSVNPGFGGQSFIPEALKKIAAVRKLIDESGRTILLEVDGGIK 182

Query: 181 VENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELA 219
           +ENIAAAA+AGADTFVAGSAIFG  DYK VIDAMRAELA
Sbjct: 183 IENIAAAAKAGADTFVAGSAIFGAADYKTVIDAMRAELA 221