BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2037.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777268.1| universal stress protein [Herbaspirillum ser...   254   3e-66
ref|YP_004751364.1| Universal stress protein [Collimonas fungivo...   195   2e-48
ref|ZP_08276002.1| Universal stress protein [Oxalobacteraceae ba...   176   7e-43
ref|YP_001352123.1| universal stress protein (Usp) [Janthinobact...   148   3e-34
ref|YP_001098742.1| hypothetical protein HEAR0391 [Herminiimonas...   145   2e-33

>ref|YP_003777268.1| universal stress protein [Herbaspirillum seropedicae SmR1]
 emb|CAM32578.1| Universal stress protein [Herbaspirillum seropedicae]
 gb|ADJ65360.1| universal stress protein [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  254 bits (649), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 134/145 (92%), Positives = 138/145 (95%)

Query: 1   MFKNILVPTDGSERSDKAIATAIDYAKNSGASIVGISVAEPYPFSPLAESSMAIDPALYE 60
           MFK ILVPTDGSERSDKAIATA+DYAKNSGA ++GI+VAEPYPFSPLAESSMAIDPALYE
Sbjct: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60

Query: 61  ENVKTLANQHIKKIADAAAAAGVPCQTEIVMSFNPDEEIIKAATLHGCDAIFMASHGRSG 120
           ENVKTLA QHIKKI DAA AAGVPCQTEIVMSFNPDEEIIKAA LH CDAIFMASHGRSG
Sbjct: 61  ENVKTLAQQHIKKITDAATAAGVPCQTEIVMSFNPDEEIIKAAQLHACDAIFMASHGRSG 120

Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145
           LSRIFLGSKTQKVLTHSTIPVLVLR
Sbjct: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145


>ref|YP_004751364.1| Universal stress protein [Collimonas fungivorans Ter331]
 gb|AEK60541.1| Universal stress protein [Collimonas fungivorans Ter331]
          Length = 158

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 101/145 (69%), Positives = 117/145 (80%)

Query: 1   MFKNILVPTDGSERSDKAIATAIDYAKNSGASIVGISVAEPYPFSPLAESSMAIDPALYE 60
           MFK ILVPTDGS  SDKAI TAI++AK S   I+ +SVAEPYPFSP+AES+MA DP  YE
Sbjct: 14  MFKTILVPTDGSHLSDKAINTAIEFAKFSSGRIIALSVAEPYPFSPMAESTMATDPGTYE 73

Query: 61  ENVKTLANQHIKKIADAAAAAGVPCQTEIVMSFNPDEEIIKAATLHGCDAIFMASHGRSG 120
           EN+  LA  +++K+ADAA  AGVPC+     +FNPDEEII AA  + CDAIFMASHGRSG
Sbjct: 74  ENMLALAKLNVQKVADAARNAGVPCEMLTAQAFNPDEEIISAAEKYHCDAIFMASHGRSG 133

Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145
           LSR+FLGSKTQ+VL HSTIPVLVLR
Sbjct: 134 LSRLFLGSKTQRVLAHSTIPVLVLR 158


>ref|ZP_08276002.1| Universal stress protein [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30529.1| Universal stress protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 145

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 115/145 (79%)

Query: 1   MFKNILVPTDGSERSDKAIATAIDYAKNSGASIVGISVAEPYPFSPLAESSMAIDPALYE 60
           MFK ILVPTDGS  SDKAI  AI++A+ +GA IVG+SVAEPYP+SPL+E ++ ID   Y+
Sbjct: 1   MFKTILVPTDGSALSDKAIHAAIEFAQLTGARIVGLSVAEPYPYSPLSEGAITIDSTAYQ 60

Query: 61  ENVKTLANQHIKKIADAAAAAGVPCQTEIVMSFNPDEEIIKAATLHGCDAIFMASHGRSG 120
           E +  +A  ++++IADAA+AA V C+T +  SF+P EEI+  A LHGCD +FMASHGR G
Sbjct: 61  EKMLEIARSNVRQIADAASAANVTCETHVRESFSPYEEIVSVADLHGCDVVFMASHGRKG 120

Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145
           L+++F+GS+TQKVL HST+PVLV R
Sbjct: 121 LNKLFVGSETQKVLAHSTLPVLVFR 145


>ref|YP_001352123.1| universal stress protein (Usp) [Janthinobacterium sp. Marseille]
 gb|ABR90388.1| universal stress protein (Usp) [Janthinobacterium sp. Marseille]
          Length = 147

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 1   MFKNILVPTDGSERSDKAIATAIDYAKNSGASIVGISVAEPYPFSPLAESS--MAIDPAL 58
           MFK IL+PTDGS  SDKA+  AI++A+  G+ ++ +SVAEPY +  L E +     DP +
Sbjct: 1   MFKKILIPTDGSPLSDKAVDAAIEFAQKMGSELLVLSVAEPYVYMGLMEGAGVFPTDPVM 60

Query: 59  YEENVKTLANQHIKKIADAAAAAGVPCQTEIVMSFNPDEEIIKAATLHGCDAIFMASHGR 118
           Y++ VK LA +H+ K+  A    GV C+T + +  +P EEI++ A    CD IFMASHGR
Sbjct: 61  YDDKVKELAQKHLDKVEAATRDKGVSCKTVVSVGLSPYEEIVRVAEEQKCDVIFMASHGR 120

Query: 119 SGLSRIFLGSKTQKVLTHSTIPVLVLR 145
            GL+++F+GS+TQKVL H+++PVLVLR
Sbjct: 121 KGLNKLFIGSETQKVLAHTSLPVLVLR 147


>ref|YP_001098742.1| hypothetical protein HEAR0391 [Herminiimonas arsenicoxydans]
 emb|CAL60613.1| Universal stress protein UspA [Herminiimonas arsenicoxydans]
          Length = 147

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 100/147 (68%), Gaps = 2/147 (1%)

Query: 1   MFKNILVPTDGSERSDKAIATAIDYAKNSGASIVGISVAEPYPFSPLAESS--MAIDPAL 58
           MFK ILVPTDGS  SDKAI  AI++AK     +V + VAEPY +S L E +    +D   
Sbjct: 1   MFKKILVPTDGSPLSDKAITAAIEFAKTVNGELVTLCVAEPYVYSALVEGAGVFPMDSVA 60

Query: 59  YEENVKTLANQHIKKIADAAAAAGVPCQTEIVMSFNPDEEIIKAATLHGCDAIFMASHGR 118
           Y+E  + +A  ++ K A  A A GV C+T + +SF+P EEI++ A    CD IFMASHGR
Sbjct: 61  YDEKAQEIAQHNVDKAAALARAQGVTCKTAVALSFSPYEEIVRTAEASACDVIFMASHGR 120

Query: 119 SGLSRIFLGSKTQKVLTHSTIPVLVLR 145
            GL+++F+GS+TQKVL HSTIPVLV R
Sbjct: 121 KGLNKLFVGSETQKVLAHSTIPVLVFR 147