BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2035.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775103.1| AraC family transcription regulator protein ... 356 3e-96 ref|ZP_02959762.1| hypothetical protein PROSTU_01654 [Providenci... 254 2e-65 ref|YP_002152664.1| transcriptional regulator [Proteus mirabilis... 254 2e-65 ref|ZP_03318396.1| hypothetical protein PROVALCAL_01327 [Provide... 253 3e-65 ref|ZP_06688742.1| AraC family transcriptional regulator [Achrom... 248 6e-64 >ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63195.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 184/245 (75%), Positives = 209/245 (85%) Query: 44 LPIDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHA 103 LPID+VD IARPVVAAGA Y ++Q WHSHRRAQLL+GL GLMQV+T DGAWVVPPQHA Sbjct: 14 LPIDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHA 73 Query: 104 VWIPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYA 163 VWIPSGREHQSRML VTTCSAF+EPEHAPR A +CQVL V PLLRELLIEATR+DPHY Sbjct: 74 VWIPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLAVRPLLRELLIEATRMDPHYV 133 Query: 164 PDSREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHM 223 SREE L+ LLL EI RA EIP +VPLP E +LG LC F+ +PSIR+ PA+WA QLH+ Sbjct: 134 LHSREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHI 193 Query: 224 SERSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKR 283 SER+F+RRFLAQTGMGFQQWRLRAC++ AISRLALG VT IAYDLGYE+PA FSTMF++ Sbjct: 194 SERTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRK 253 Query: 284 MTGYV 288 MTG++ Sbjct: 254 MTGHM 258 >ref|ZP_02959762.1| hypothetical protein PROSTU_01654 [Providencia stuartii ATCC 25827] gb|EDU58479.1| hypothetical protein PROSTU_01654 [Providencia stuartii ATCC 25827] Length = 261 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 123/247 (49%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 44 LPIDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHA 103 +P+ VD IAR V+A G DY D+L +H+HRRAQ L+ GL+++ T DG WV+PP Sbjct: 4 IPLKSVDNIARDVIALGTDYLPDTLLEYHAHRRAQFLYPATGLIEISTADGEWVIPPSCG 63 Query: 104 VWIPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYA 163 VWIP H++RML V+T S ++EP PR A +C+V+ V PLLR+LL+EA I Y Sbjct: 64 VWIPEQVAHETRML-NVSTRSLYIEPAAKPRHAVSCEVVSVSPLLRQLLLEAVDIPAEYD 122 Query: 164 PDSREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHM 223 R+ LM L+L E+AR +P + P+P++EKLG LCR+FMR P I ++P EWAEQLH Sbjct: 123 IQGRDGVLMQLILCELARMPPLPFFAPIPRDEKLGRLCREFMRKPVITSQPGEWAEQLHK 182 Query: 224 SERSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKR 283 SERSF+R F QTGM F +WR +AC++N++S + G S+T +AY+LGY FS MFK+ Sbjct: 183 SERSFSRFFRTQTGMSFSEWRQQACLLNSLSHILSGKSITEVAYELGYNSAGAFSIMFKK 242 Query: 284 MTGYVPS 290 G PS Sbjct: 243 QMGQSPS 249 >ref|YP_002152664.1| transcriptional regulator [Proteus mirabilis HI4320] ref|ZP_03839428.1| AraC family transcriptional regulator [Proteus mirabilis ATCC 29906] emb|CAR45830.1| probable transcriptional regulator [Proteus mirabilis HI4320] gb|EEI49651.1| AraC family transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 256 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 122/247 (49%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 44 LPIDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHA 103 +P++ VD + R V+A G DY ++L H HRRAQ L+ GL++V T DG WV+PP Sbjct: 4 VPLESVDLLERDVIALGTDYLPNTLLETHRHRRAQFLYPATGLIEVSTNDGEWVIPPSCG 63 Query: 104 VWIPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYA 163 VWIP H++RML V+T S ++EP APR ++ C+VL V PLLR+LL+EA + Y Sbjct: 64 VWIPPQTGHETRML-DVSTRSLYIEPAAAPRQSQQCEVLRVSPLLRQLLLEAVDVPAQYD 122 Query: 164 PDSREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHM 223 R+ LM L+L E+A+A +P +VP+PQ+ KL LCRDF+R P I A P +WAE+LH Sbjct: 123 KKGRDGILMQLILYELAKAEPLPFFVPIPQDSKLAKLCRDFIRQPKIDALPQQWAEKLHK 182 Query: 224 SERSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKR 283 SERSF+R F QTGM F QWR + C++N+++++ GHS+TA+A+DLGY ++FSTMFK+ Sbjct: 183 SERSFSRFFRQQTGMAFSQWRQQVCLLNSLTQILSGHSITAVAFDLGYNSASSFSTMFKK 242 Query: 284 MTGYVPS 290 G PS Sbjct: 243 QMGQSPS 249 >ref|ZP_03318396.1| hypothetical protein PROVALCAL_01327 [Providencia alcalifaciens DSM 30120] gb|EEB46603.1| hypothetical protein PROVALCAL_01327 [Providencia alcalifaciens DSM 30120] Length = 257 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 119/248 (47%), Positives = 168/248 (67%), Gaps = 1/248 (0%) Query: 44 LPIDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHA 103 +P++ +D + R V+A G DY + L H HRRAQ L+G GL++V T+DG WV+PP Sbjct: 4 IPLNTIDHVPRDVLALGTDYLPNVLLNSHKHRRAQFLYGATGLIEVSTEDGEWVIPPDSG 63 Query: 104 VWIPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYA 163 VWIP H++RML V+T S ++EP APR + C+VL V PLLR+LL+EA + Y Sbjct: 64 VWIPQNTAHETRML-NVSTRSLYIEPAAAPRNSNKCEVLRVTPLLRQLLLEAVDVPLEYD 122 Query: 164 PDSREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHM 223 R+ L+ L+L E+ARA +P + P+P++E L LC+ F++SP I + P +WA +LH Sbjct: 123 LTGRDGVLIQLILHEVARAEPLPFFAPIPRDESLATLCKAFLKSPQITSLPQDWAAKLHK 182 Query: 224 SERSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKR 283 SERSF+R F AQTG+ F WR +AC++NAISR++ G S+T +A+DLGY +FSTMFK+ Sbjct: 183 SERSFSRFFGAQTGLSFSDWRQQACLLNAISRISAGKSITEVAFDLGYSNVGSFSTMFKK 242 Query: 284 MTGYVPSS 291 G PSS Sbjct: 243 WLGQSPSS 250 >ref|ZP_06688742.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF74363.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 267 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 139/260 (53%), Positives = 175/260 (67%), Gaps = 4/260 (1%) Query: 36 KPSLSRSPLP---IDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQ 92 +P+ RSPL IDR D + R VVA G DY H+HRRAQLL+G G+MQV T+ Sbjct: 5 QPTALRSPLRNTHIDRYDHLDREVVAIGNDYPPGHELPAHAHRRAQLLYGATGVMQVATR 64 Query: 93 DGAWVVPPQHAVWIPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELL 152 DG WVVPPQHAVWIP+G HQ RML V+T SA+VEP A C+V+E+ PLLR+LL Sbjct: 65 DGNWVVPPQHAVWIPAGVTHQVRML-DVSTRSAYVEPGIARAGVDACEVIEISPLLRQLL 123 Query: 153 IEATRIDPHYAPDSREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRA 212 +EA + YA D R+ AL LLL EI RA +P+++PL ++ KL LCR F+ +P R Sbjct: 124 LEAVDMPAAYARDGRDGALAQLLLHEIERAPVLPLHIPLARDRKLAPLCRAFIAAPDARI 183 Query: 213 RPAEWAEQLHMSERSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYE 272 P WA +LHMS R+F+R F Q GM F QWR RAC+V A++RLA G SVTAIA D GY+ Sbjct: 184 PPEAWAVRLHMSPRTFSRYFRQQMGMAFSQWRQRACVVLALARLAAGGSVTAIALDFGYQ 243 Query: 273 QPATFSTMFKRMTGYVPSSH 292 PA FSTMF+R+ G P+ + Sbjct: 244 SPAAFSTMFRRVLGRSPTDY 263