BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2034.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775102.1| drug/metabolite transporter (DMT) superfamil... 344 7e-93 ref|YP_433712.1| DMT family permease [Hahella chejuensis KCTC 23... 125 6e-27 ref|ZP_08873141.1| hypothetical protein VeAt4_11170 [Verminephro... 108 9e-22 ref|YP_995646.1| hypothetical protein Veis_0849 [Verminephrobact... 105 1e-20 ref|ZP_01074338.1| hypothetical protein MED121_15469 [Marinomona... 104 2e-20 >ref|YP_003775102.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ63194.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 356 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 211/291 (72%), Positives = 245/291 (84%) Query: 2 PPPLLSGILVALIWGVQPVISRYGLQQGLTPLDATLMRFLTSGLLILPFAWRRGLWQACG 61 PPPLL+GILVALIWG+QPVISRYG Q GLTP DATL+R+LTSGLL+LP+ WRRGL +ACG Sbjct: 48 PPPLLAGILVALIWGIQPVISRYGFQHGLTPQDATLVRYLTSGLLMLPYVWRRGLAKACG 107 Query: 62 VGWGRGLVLFLLSGPLFSLVLVAGVNYAPASHGALIHPALTPLFGMAISRFALGQRERIS 121 + W R LVLFLLSGPLFSLVLV GVNYAPASHGALIHPALTPLFGMAISRF + ER S Sbjct: 108 LRWPRALVLFLLSGPLFSLVLVGGVNYAPASHGALIHPALTPLFGMAISRFVFRRDERFS 167 Query: 122 LWGVLLLLAGLVLVALNGILASGGLAPDGAWRGDLLFVLSALMWSSYLMLNRAWKIAPLD 181 LWG +LL+ GL++V L+G++A G LAP+GAWRGDLLFVLSA MW+ YL+LN+ W + PLD Sbjct: 168 LWGTVLLVGGLLVVGLHGVMAGGSLAPEGAWRGDLLFVLSAFMWAWYLVLNKTWGLPPLD 227 Query: 182 AVALTQVLSLACMLLALPWLGTQTFSKPASALLLQSAYQGVLVSIVSVALFNWVVARLGV 241 AVA+TQVLSL +L LPW G +TF+KP +AL LQS Y GVLVSIVSVALFNWVVARLGV Sbjct: 228 AVAMTQVLSLGWVLAVLPWQGPETFAKPWAALALQSLYHGVLVSIVSVALFNWVVARLGV 287 Query: 242 KALMLNALSPLFGVLASAWILGETLSVSMMTGAVAIVAGLGVTMKKKRPVP 292 KA+MLNALSPLFGVLASAW L E L SM+ GA AI+AGL +++++ P Sbjct: 288 KAMMLNALSPLFGVLASAWALREPLPPSMLAGAAAIMAGLALSLRRPSGSP 338 >ref|YP_433712.1| DMT family permease [Hahella chejuensis KCTC 2396] gb|ABC29287.1| Permease of the drug/metabolite transporter (DMT) superfamily [Hahella chejuensis KCTC 2396] Length = 307 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 100/280 (35%), Positives = 153/280 (54%), Gaps = 13/280 (4%) Query: 8 GILVALIWGVQPVISRYGLQQGLTPLDATLMRFLTSGLLILPFAWRRGLWQACGVGWGRG 67 G+L ALIWG+ PVISR G+QQ LT D +RF+ +G++ LP+ + GL G+ W + Sbjct: 15 GVLAALIWGIWPVISRLGVQQTLTAYDVAAIRFIVAGVIFLPWVIKSGLG---GLTWRQA 71 Query: 68 LVLFLLSGPLFSLVLVAGVNYAPASHGALIHPALTPLFGMAISRFALGQRERISLW-GVL 126 L+L +G + L+ V G+ APASHG +I + LF S LG R W G + Sbjct: 72 LILTTGAGAPYVLISVGGLTLAPASHGGVIISGCSFLFATLGSVLLLGDRPTSQRWIGFV 131 Query: 127 LLLAGLVLVALNGILASGGLAPDGAWRGDLLFVLSALMWSSYLMLNRAWKIAPLDAVALT 186 L+ G++ + I +S D AW GDL+FVLS +W+SY + ++ + + P+ A+ Sbjct: 132 LIALGILSIGYRSITSSSAALAD-AWIGDLIFVLSGFLWASYTLNSKRYNVPPVMGAAVV 190 Query: 187 QVLSLACMLLALP-WLG---TQTFSKPASALLLQSAYQGVLVSIVSVALFNWVVARLG-V 241 VLS MLL +P WL F A L++Q +QGVL + +++ + ++ LG Sbjct: 191 SVLS---MLLYVPAWLAFGEPHIFQASAQELIVQGVFQGVLAAAIALVCYTKSISILGAA 247 Query: 242 KALMLNALSPLFGVLASAWILGETLSVSMMTGAVAIVAGL 281 +A + +L+P VL ILGET S + G ++ GL Sbjct: 248 QAAVFTSLAPGLAVLFGDLILGETPSSAEYIGVSLVILGL 287 >ref|ZP_08873141.1| hypothetical protein VeAt4_11170 [Verminephrobacter sp. At4] Length = 305 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 7/292 (2%) Query: 5 LLSGILVALIWGVQPVISRYGLQQGLTPLDATLMRFLTSGLLILPFAWRRGLWQACGVGW 64 +L G+ VALIW V +R+ ++ L P D T +RF S L + P R G + +G Sbjct: 17 VLCGLAVALIWSGWSVATRFAMKTELAPADVTFLRFGVSALFLWPILLRHG-FGFQRIGI 75 Query: 65 GRGLVLFLLSGPLFSLVLVAGVNYAPASHGALIHPALTPLFGMAISRFALGQR-ERISLW 123 R ++ + +G F ++ G+ +APASH A + + P+F +S +R R+ L Sbjct: 76 ARVCIMLVGAGVPFMMLASVGMRFAPASHAATLMIGMMPIFVAVLSALFFKERFSRMQLC 135 Query: 124 GVLLLLAGLVLVALNGILASGGLAPDGAWRGDLLFVLSALMWSSYLMLNRAWKIAPLDAV 183 G+ +++ G + ++ DG WRGDLLF+ + L+++SY ++ R I+P A Sbjct: 136 GLAVVMVGAACMGGQALIVHRA---DGQWRGDLLFLCAGLLFASYTVVQRRSGISPWHAT 192 Query: 184 ALTQVLS-LACMLLALPWLGTQTFSKPASALLLQSAYQGVLVSIVSVALFNWVVARLGV- 241 AL V S L + +L F+ P LL Q QG+ V+I+++ + V RLG Sbjct: 193 ALVNVGSGLIFAPIYFLFLQPGIFAAPVPELLFQVFAQGICVAILAMFFYAEAVRRLGAP 252 Query: 242 KALMLNALSPLFGVLASAWILGETLSVSMMTGAVAIVAGLGVTMKKKRPVPP 293 +A + AL+P VL +LGE + + G V ++AG+ + + RP P Sbjct: 253 RAAIFGALAPALAVLMGIPVLGEFPGGAGLAGIVLVMAGVVLVVTGVRPAKP 304 >ref|YP_995646.1| hypothetical protein Veis_0849 [Verminephrobacter eiseniae EF01-2] gb|ABM56628.1| protein of unknown function DUF6, transmembrane [Verminephrobacter eiseniae EF01-2] Length = 288 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 145/289 (50%), Gaps = 9/289 (3%) Query: 8 GILVALIWGVQPVISRYGLQQGLTPLDATLMRFLTSGLLILPFAWRRGLWQACGVGWGRG 67 G+ VALIW V +R+ ++ L P D T +RF + + + P R G +G Sbjct: 4 GLAVALIWSGWSVATRFAMKTELAPADVTFLRFGVAAIFLWPVLLRHGFGFK-RIGRLNV 62 Query: 68 LVLFLLSGPLFSLVLVAGVNYAPASHGALIHPALTPLFGMAISRFALGQR-ERISLWGVL 126 ++ + +G F ++ G+ +APASH A + + P+F +S +R R+ L G+ Sbjct: 63 CIMLIGAGVPFMMLAATGMRFAPASHVATLMIGMMPIFVALLSALFFRERFSRVQLGGLA 122 Query: 127 LLLAGLVLVALNGILASGGLAPDGAWRGDLLFVLSALMWSSYLMLNRAWKIAPLDAVALT 186 ++ G + + ++A G G WRGDLLF+ + L ++SY ++ R I+P A AL Sbjct: 123 TVIVGAACLGGHALIADRGA---GEWRGDLLFLCAGLCFASYTVVQRRSGISPWHATALV 179 Query: 187 QVLSLACMLLALPWLGTQ--TFSKPASALLLQSAYQGVLVSIVSVALFNWVVARLGV-KA 243 V S A + + WL Q F+ P S LL Q QGV +IV++ + V RLG +A Sbjct: 180 NVGS-ALVFAPIYWLFLQPRIFTAPVSDLLFQVFAQGVCAAIVAMFFYAEAVRRLGAPRA 238 Query: 244 LMLNALSPLFGVLASAWILGETLSVSMMTGAVAIVAGLGVTMKKKRPVP 292 + AL+P F VL LGE + G ++AG+ + + RP P Sbjct: 239 AIFGALTPAFAVLIGIPALGEIPGGVGLAGIALVMAGVVLVVTGARPRP 287 >ref|ZP_01074338.1| hypothetical protein MED121_15469 [Marinomonas sp. MED121] gb|EAQ67339.1| hypothetical protein MED121_15469 [Marinomonas sp. MED121] Length = 311 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 8 GILVALIWGVQPVISRYGLQQGLTPLDATLMRFLTSGLLILP-FAWRRGLWQACGVGWGR 66 GI +IW PV+S+ L P D T++RF SGL++LP F R +A + Sbjct: 15 GISATVIWAGWPVLSKIATNNQLAPYDITMLRFSISGLILLPLFIMRFARLKAIA---AK 71 Query: 67 GLVLFLLSGPLFSLVLVAGVNYAPASHGALIHPALTPLFGMAISRFALGQRERIS-LWGV 125 G+VL +G + L +G+ YAP SH ++I P LF S LG++ ++ + G+ Sbjct: 72 GVVLAFGAGAPYVLFGTSGMAYAPTSHFSIIMPTSMLLFTTLGSVLWLGEKLTLTRILGI 131 Query: 126 LLLLAGLVLVALNGILASGGLAPDGAWRGDLLFVLSALMWSSYLMLNRAWKIAPLDAVAL 185 ++AG+V V N + GGLA + GD ++++ +WS Y +L R WKI P DA L Sbjct: 132 SFIIAGVVFVGANSL---GGLAIEDTLIGDFMYLMCGFLWSIYTLLARYWKINPWDATVL 188 Query: 186 TQVLSLAC-MLLALPWLGTQTFSKPASALLLQSAYQGVLVSIVSVALFNWVVARLG 240 ++S+ M L G Q + L++Q YQGV SI ++ L++ V LG Sbjct: 189 VSMVSIVLYMPFYLYQFGGQILAVETDTLIIQGLYQGVFASIGALYLYSKSVTLLG 244