BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2033.p (488 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777400.1| sugar ABC transporter permease [Herbaspirill... 509 e-142 ref|YP_004227088.1| inner-membrane translocator [Burkholderia sp... 289 8e-76 ref|YP_001372446.1| inner-membrane translocator [Ochrobactrum an... 286 4e-75 ref|YP_003911136.1| inner-membrane translocator [Burkholderia sp... 281 1e-73 ref|YP_003609015.1| inner-membrane translocator [Burkholderia sp... 278 2e-72 >ref|YP_003777400.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65492.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 305/320 (95%), Positives = 311/320 (97%), Gaps = 4/320 (1%) Query: 169 MSAARATMGAALQQRPWVWSFMGAALLWLATLAVAGPEAAFNIGLSAFSFGALMVLVGLG 228 MS R+T L+QRPWVWSF+GAALLWLATLAVAGP+AA NIGLSAFSFGALMVLVGLG Sbjct: 1 MSRLRST----LEQRPWVWSFLGAALLWLATLAVAGPDAAVNIGLSAFSFGALMVLVGLG 56 Query: 229 QMLVVTTGPGNIDLSIPSTIAQAGALGLRTMGGEDGGILLGLLVTLGVGVGIGLANYLLI 288 QMLVVTTGPGNIDLSIPSTIA AGALGLRTMGGEDGGILLGL+VTLGVGVGIGLANYLLI Sbjct: 57 QMLVVTTGPGNIDLSIPSTIALAGALGLRTMGGEDGGILLGLVVTLGVGVGIGLANYLLI 116 Query: 289 RLLQIPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHLPQLAWLVLAVAL 348 RLLQIPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLH+PQLAWLVLAVAL Sbjct: 117 RLLQIPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHVPQLAWLVLAVAL 176 Query: 349 GLAWILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCPCYVLCAVFAALCALLIAGFSGG 408 GLAWILGRTLFGRFLSAVGQNARAAWLAGIGVERIRC CYVLCAVFAALCALLIAGFSGG Sbjct: 177 GLAWILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVFAALCALLIAGFSGG 236 Query: 409 ASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSV 468 ASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSV Sbjct: 237 ASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSV 296 Query: 469 LSGLIIIAVIVCSGRRRQYR 488 LSGLIIIAVIVCSGRRRQYR Sbjct: 297 LSGLIIIAVIVCSGRRRQYR 316 >ref|YP_004227088.1| inner-membrane translocator [Burkholderia sp. CCGE1001] gb|ADX54028.1| inner-membrane translocator [Burkholderia sp. CCGE1001] Length = 328 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 182/319 (57%), Positives = 235/319 (73%), Gaps = 1/319 (0%) Query: 164 TGRTSMSAARATMGAALQQRPWVWSFMGAALLWLATLAVAGPEAAFNIGLSAFSFGALMV 223 TGRT + A Q PW WSF+GA L+W + V G A N+ +A ++G MV Sbjct: 6 TGRTIGADETAWSRLRSVQAPWAWSFVGAVLVWFGIVGVFGFGIATNVAQTALTYGVFMV 65 Query: 224 LVGLGQMLVVTTGPGNIDLSIPSTIAQAGALGLRTMGGEDGGILLGLLVTLGVGVGIGLA 283 LVGLGQMLV+T+G GNIDLS+PSTIA AG +G+ MGG DG I+LG++ LGVGV +GLA Sbjct: 66 LVGLGQMLVITSGVGNIDLSVPSTIALAGVIGMHVMGGADGQIVLGVVAALGVGVAVGLA 125 Query: 284 NYLLIRLLQIPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHLPQLAWLV 343 NY+LIRLL+IPPIIAT+SSSFI+QS+AI G+ L P L +FATG L++P +A L Sbjct: 126 NYMLIRLLRIPPIIATLSSSFIIQSIAITQGRQLPPPP-PALGAFATGRFLNVPYIALLA 184 Query: 344 LAVALGLAWILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCPCYVLCAVFAALCALLIA 403 LA++ LA +L R ++GR LSA+GQNARAAWLAG+ V R RC YVLC++ AAL ALL+A Sbjct: 185 LALSAALAVLLHRAVYGRKLSAIGQNARAAWLAGVDVHRTRCVAYVLCSMIAALTALLLA 244 Query: 404 GFSGGASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSA 463 SGGASLDMG EY+L+S+AVVVIGGT V GG+ ++ G+WGA++FL+ TN LN +G A Sbjct: 245 ATSGGASLDMGVEYMLISIAVVVIGGTLVAGGKATIVGVWGASMFLFLTNAALNALGADA 304 Query: 464 GERSVLSGLIIIAVIVCSG 482 G RS++ G++IIAV V +G Sbjct: 305 GVRSIVYGVLIIAVTVAAG 323 >ref|YP_001372446.1| inner-membrane translocator [Ochrobactrum anthropi ATCC 49188] gb|ABS16617.1| inner-membrane translocator [Ochrobactrum anthropi ATCC 49188] Length = 315 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 156/310 (50%), Positives = 219/310 (70%), Gaps = 2/310 (0%) Query: 180 LQQRPWVWSFMGAALLWLATLAVAGPEAAFNIGLSAFSFGALMVLVGLGQMLVVTTGPGN 239 L RPW+WSF+ A++W+ T+ G A + +AF+F + V+VGLGQM V+T GPGN Sbjct: 7 LTNRPWIWSFIATAVVWIITILFTGGAGAHGLSHAAFTFASFSVIVGLGQMFVITLGPGN 66 Query: 240 IDLSIPSTIAQAGALGLRTMGGEDGGILLGLLVTLGVGVGIGLANYLLIRLLQIPPIIAT 299 IDLS+P+ + A L L+ M +DG +L GL V + VGV IG+ NY LI+LL+IPPIIAT Sbjct: 67 IDLSVPANMTLAATLALKLMDTQDGMVLAGLGVAILVGVAIGICNYTLIKLLRIPPIIAT 126 Query: 300 MSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHLPQLAWLVLAVALGLAWI-LGRTL 358 +S SF++QS AI +GL++ PP+ LA F T L +P +A + L +++ + W+ L +++ Sbjct: 127 LSMSFLIQSTAIWSNRGLRVKPPESLAQFTTSSTLGVPNVALVALILSV-IGWVLLKKSI 185 Query: 359 FGRFLSAVGQNARAAWLAGIGVERIRCPCYVLCAVFAALCALLIAGFSGGASLDMGNEYL 418 +GR++SA+GQN AA +AG+ V+ R Y+LCAV A+LC L+A FSGGA+L+MG EYL Sbjct: 186 YGRWISAIGQNPFAARMAGVPVDGTRFITYLLCAVLASLCGFLLACFSGGAALNMGAEYL 245 Query: 419 LMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSVLSGLIIIAVI 478 LMS+AVV+IGGT+V GG ++ GIWGAALF++ ++LN G AG R VL+GL IIAVI Sbjct: 246 LMSIAVVIIGGTAVAGGDSNIPGIWGAALFMFLIVSMLNTYGFGAGVRLVLTGLTIIAVI 305 Query: 479 VCSGRRRQYR 488 V + RR R Sbjct: 306 VLASGRRAER 315 >ref|YP_003911136.1| inner-membrane translocator [Burkholderia sp. CCGE1003] gb|ADN61845.1| inner-membrane translocator [Burkholderia sp. CCGE1003] Length = 328 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 177/314 (56%), Positives = 233/314 (74%), Gaps = 3/314 (0%) Query: 171 AARATMGAALQ--QRPWVWSFMGAALLWLATLAVAGPEAAFNIGLSAFSFGALMVLVGLG 228 A ATM + L+ Q PW WSF+GA L+W + V G A N+ +A ++G MVLVGLG Sbjct: 11 GADATMWSRLRSVQAPWAWSFVGAVLVWFGIVGVFGFGIASNVAQTALTYGVFMVLVGLG 70 Query: 229 QMLVVTTGPGNIDLSIPSTIAQAGALGLRTMGGEDGGILLGLLVTLGVGVGIGLANYLLI 288 QMLV+T+G GNIDLS+PSTIA AG +G+ MGG +G I+LG+ LGVG+ +GLANY+LI Sbjct: 71 QMLVITSGVGNIDLSVPSTIALAGVIGMHVMGGANGRIVLGVAAALGVGIAVGLANYMLI 130 Query: 289 RLLQIPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHLPQLAWLVLAVAL 348 RLL+IPPIIAT+SSSFI+QS+AI G+ L P L +FAT L++P +A L A++ Sbjct: 131 RLLRIPPIIATLSSSFIIQSIAITQGRQLPPPP-PALGAFATSRFLNVPYIALLAFALSA 189 Query: 349 GLAWILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCPCYVLCAVFAALCALLIAGFSGG 408 LA +L R ++GR LSA+GQNARAAWLAG+ V R RC Y+LC++ AAL ALL+A SGG Sbjct: 190 ALAVLLHRAVYGRKLSAIGQNARAAWLAGVDVHRTRCVAYLLCSMIAALTALLLAATSGG 249 Query: 409 ASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSV 468 ASLDMG EY+L+S+AVVVIGGT V GG+ ++ G+WGA++FL+ TN LN +G AG RS+ Sbjct: 250 ASLDMGVEYMLISIAVVVIGGTLVAGGKATIVGVWGASMFLFLTNAALNALGADAGVRSI 309 Query: 469 LSGLIIIAVIVCSG 482 + G++IIAV V +G Sbjct: 310 VYGVLIIAVTVAAG 323 >ref|YP_003609015.1| inner-membrane translocator [Burkholderia sp. CCGE1002] gb|ADG19504.1| inner-membrane translocator [Burkholderia sp. CCGE1002] Length = 328 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 172/301 (57%), Positives = 224/301 (74%), Gaps = 1/301 (0%) Query: 182 QRPWVWSFMGAALLWLATLAVAGPEAAFNIGLSAFSFGALMVLVGLGQMLVVTTGPGNID 241 Q PW WSF GA L+W + V G A N+ +A ++G MVLVGLGQMLV+T+G GNID Sbjct: 24 QAPWAWSFAGAVLVWFGIVGVFGFGIASNVAQTALTYGVFMVLVGLGQMLVITSGVGNID 83 Query: 242 LSIPSTIAQAGALGLRTMGGEDGGILLGLLVTLGVGVGIGLANYLLIRLLQIPPIIATMS 301 LS+PSTIA AG +G+ MGG D ++LG+ LGVGV +GLANY+LIRLL+IPPIIAT+S Sbjct: 84 LSVPSTIALAGVIGMHVMGGSDARVVLGVAAALGVGVAVGLANYVLIRLLRIPPIIATLS 143 Query: 302 SSFILQSLAIHVGQGLKITPPQLLASFATGWLLHLPQLAWLVLAVALGLAWILGRTLFGR 361 SSFI+QS+AI G+ L P L +FATG + +P +A LA++ LA +L R ++GR Sbjct: 144 SSFIIQSIAITQGRQLPPPP-PALGAFATGRFVGVPYIALFALALSAALAVLLHRAVYGR 202 Query: 362 FLSAVGQNARAAWLAGIGVERIRCPCYVLCAVFAALCALLIAGFSGGASLDMGNEYLLMS 421 LSA+GQNARAAWLAG+ V R RC YVLC++ AAL ALL+A SGGASLDMG EY+L+S Sbjct: 203 RLSAIGQNARAAWLAGVDVHRTRCVAYVLCSMIAALTALLLAASSGGASLDMGVEYMLIS 262 Query: 422 VAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSVLSGLIIIAVIVCS 481 +AVVVIGGT V GG+ ++ G+WGA++FLY TN LN +G AG R+++ G++I+AV V + Sbjct: 263 IAVVVIGGTLVAGGKATIVGVWGASMFLYLTNAALNALGADAGVRAIVYGVLIVAVTVAA 322 Query: 482 G 482 G Sbjct: 323 G 323