BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2032.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777401.1| sugar ABC transporter permease [Herbaspirill... 483 e-134 ref|YP_003609016.1| inner-membrane translocator [Burkholderia sp... 303 4e-80 ref|ZP_01549910.1| probable sugar ABC transporter, permease prot... 295 8e-78 ref|ZP_02884325.1| inner-membrane translocator [Burkholderia gra... 295 8e-78 ref|YP_004227087.1| inner-membrane translocator [Burkholderia sp... 288 6e-76 >ref|YP_003777401.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65493.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 307/328 (93%), Positives = 314/328 (95%), Gaps = 5/328 (1%) Query: 2 TTLARTPVRARHGLLSRHEIQTLLLPMATLAVVLAPIFWINPNTMSYFGLGLLLNLAVPM 61 T+ A + R G+LSRHEIQTLLLPMATLAVVLAPIFWINPNTMSYFGLGLLLNLAVPM Sbjct: 4 TSAATVTAQRRMGVLSRHEIQTLLLPMATLAVVLAPIFWINPNTMSYFGLGLLLNLAVPM 63 Query: 62 ILASMAQLCIIAVNDLDLSIGAFISLVSCIAVTWLPERPLLGVAALIACVLLYAAIGALV 121 ILASMAQLCIIAVNDLDLSIGAFISLVSCIAVTWLPERP+LGVAAL+ACVLLYAAIGALV Sbjct: 64 ILASMAQLCIIAVNDLDLSIGAFISLVSCIAVTWLPERPVLGVAALVACVLLYAAIGALV 123 Query: 122 ELFDLPSIVVTLGLSFVWGG-----WALILLPMPGGATPQWIQDVMNLAIPVVPTPIVYA 176 ELFDLPSIVVTLGLSFVWGG WALILLPMPGGATPQWIQDVMNLAIPV+PTPIVYA Sbjct: 124 ELFDLPSIVVTLGLSFVWGGFVWGGWALILLPMPGGATPQWIQDVMNLAIPVIPTPIVYA 183 Query: 177 VVIALCGHWFLMRSSLGVRLRGAGGNPKAIVRSGGSVVRAKALMYGLAGVLGILSALTLV 236 V+IALC HWFLMRSS GVRLRGAGGNPKAIVRSGGSVVRAKALMYGLAGVLGILSALTLV Sbjct: 184 VLIALCAHWFLMRSSTGVRLRGAGGNPKAIVRSGGSVVRAKALMYGLAGVLGILSALTLV 243 Query: 237 GITTSADANIAQRYTLISIAAVILGGGSFIGGKVSPIGATLGAITLGIAASFLSFLNIAP 296 GITTSADANIAQRYTLISIAAVILGGGSFIGGKVSPIGATLGAITLGIAASFLSFLNIAP Sbjct: 244 GITTSADANIAQRYTLISIAAVILGGGSFIGGKVSPIGATLGAITLGIAASFLSFLNIAP 303 Query: 297 KWQIGLQGAILIIVLSMRILLSARGERQ 324 KWQIGLQGAILIIVLSMRILLSARGERQ Sbjct: 304 KWQIGLQGAILIIVLSMRILLSARGERQ 331 >ref|YP_003609016.1| inner-membrane translocator [Burkholderia sp. CCGE1002] gb|ADG19505.1| inner-membrane translocator [Burkholderia sp. CCGE1002] Length = 321 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 196/300 (65%), Positives = 242/300 (80%), Gaps = 1/300 (0%) Query: 25 LLPMATLAVVLAPIFWINPNTMSYFGLGLLLNLAVPMILASMAQLCIIAVNDLDLSIGAF 84 LLP +L VL PI + P MSYFG LLLNLAVP++LA++AQL II VNDLDLSIG+F Sbjct: 23 LLPAISLIAVLVPIVIMQPAVMSYFGSSLLLNLAVPIVLATLAQLAIITVNDLDLSIGSF 82 Query: 85 ISLVSCIAVTWLPERPLLGVAALIACVLLYAAIGALVELFDLPSIVVTLGLSFVWGGWAL 144 +SLV+CI T L + P LGV AL+ CVL YAA+GAL+EL +PSIVVTLGLSFVW G A+ Sbjct: 83 VSLVACIGATLLAKEPWLGVLALVGCVLAYAAVGALIELRQIPSIVVTLGLSFVWSGLAI 142 Query: 145 ILLPMPGGATPQWIQDVMNLAIPVVPTPIVYAVVIALCGHWFLMRSSLGVRLRGAGGNPK 204 +LLP PGG +P W+ MN P++ PIV++VVIA+ GH LMR+S GVR+RGAGGNP+ Sbjct: 143 VLLPSPGGTSPGWLGTAMNYQTPLIAAPIVWSVVIAIIGHVLLMRTSAGVRIRGAGGNPR 202 Query: 205 AIVRSGGSVVRAKALMYGLAGVLGILSALTLVGITTSADANIAQRYTLISIAAVILGGGS 264 A+ R G S+VR+KA +YG+AG+ G+LS L+L+G+TTSADAN+A RYTL+SIAAVILGGG Sbjct: 203 AMRRFGWSLVRSKATLYGIAGIFGVLSGLSLLGLTTSADANLALRYTLLSIAAVILGGGE 262 Query: 265 FIGGKVSPIGATLGAITLGIAASFLSFLNIAPKWQIGLQGAILIIVLSMRILLSARGERQ 324 FIGG+VS IGA LGA TL +AASFL+FLNI+ WQ+G+QGAILIIVLS+R+LL RGERQ Sbjct: 263 FIGGRVSVIGAVLGATTLTLAASFLAFLNISADWQVGMQGAILIIVLSLRVLLQ-RGERQ 321 >ref|ZP_01549910.1| probable sugar ABC transporter, permease protein [Stappia aggregata IAM 12614] gb|EAV41516.1| probable sugar ABC transporter, permease protein [Stappia aggregata IAM 12614] Length = 313 Score = 295 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 178/300 (59%), Positives = 230/300 (76%) Query: 24 LLLPMATLAVVLAPIFWINPNTMSYFGLGLLLNLAVPMILASMAQLCIIAVNDLDLSIGA 83 +LLP+ +L V+LA +F++ P MSYFGL LL NLAVP+ LA++AQ+ II VND+DLS+G Sbjct: 7 ILLPVLSLTVLLAAVFYLQPRAMSYFGLNLLFNLAVPIALATIAQMMIIMVNDIDLSVGT 66 Query: 84 FISLVSCIAVTWLPERPLLGVAALIACVLLYAAIGALVELFDLPSIVVTLGLSFVWGGWA 143 F+S V+C+ T+L + PLLGVA L+A +L YAAIGAL+ + LP+IVVTLG+SFVWGG A Sbjct: 67 FVSFVACVTATFLNDAPLLGVAILLASILAYAAIGALIHIRQLPAIVVTLGMSFVWGGLA 126 Query: 144 LILLPMPGGATPQWIQDVMNLAIPVVPTPIVYAVVIALCGHWFLMRSSLGVRLRGAGGNP 203 ++LLP PGGA P WI+ VM + P+VP +V VVIA H +MRSS G LR GGN Sbjct: 127 VLLLPSPGGAAPAWIRTVMTVKPPLVPMAVVACVVIAGLTHLLIMRSSTGTLLRAVGGNA 186 Query: 204 KAIVRSGGSVVRAKALMYGLAGVLGILSALTLVGITTSADANIAQRYTLISIAAVILGGG 263 +A+ RSG SV + KA Y LAG G+L+ + LVG+TTSADANIA RYTL+SIA VILGGG Sbjct: 187 QAVARSGWSVTKLKAGAYALAGFFGVLAGVCLVGLTTSADANIALRYTLLSIAGVILGGG 246 Query: 264 SFIGGKVSPIGATLGAITLGIAASFLSFLNIAPKWQIGLQGAILIIVLSMRILLSARGER 323 F GG+VSP+GA LGA+TL +A SFLSF+ ++P WQIG QGAILI+VL++R++ S RG + Sbjct: 247 EFTGGRVSPVGAVLGALTLALAGSFLSFMRLSPDWQIGAQGAILILVLAVRLIFSRRGRK 306 >ref|ZP_02884325.1| inner-membrane translocator [Burkholderia graminis C4D1M] gb|EDT10329.1| inner-membrane translocator [Burkholderia graminis C4D1M] Length = 311 Score = 295 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 192/300 (64%), Positives = 241/300 (80%), Gaps = 1/300 (0%) Query: 25 LLPMATLAVVLAPIFWINPNTMSYFGLGLLLNLAVPMILASMAQLCIIAVNDLDLSIGAF 84 +LP +L VL PI + P MSYFG LLLNLAVP++LA++AQL II VNDLDLSIG F Sbjct: 13 MLPAISLVAVLVPIAIMQPTVMSYFGSSLLLNLAVPIVLATLAQLAIITVNDLDLSIGPF 72 Query: 85 ISLVSCIAVTWLPERPLLGVAALIACVLLYAAIGALVELFDLPSIVVTLGLSFVWGGWAL 144 +SLV+CI T L ++P LG AL CVL YAA+GAL+EL +PSIVVTLGLSFVW G A+ Sbjct: 73 VSLVACIGATLLVKQPWLGALALAGCVLAYAAVGALIELRQIPSIVVTLGLSFVWSGLAI 132 Query: 145 ILLPMPGGATPQWIQDVMNLAIPVVPTPIVYAVVIALCGHWFLMRSSLGVRLRGAGGNPK 204 +LLP PGG +P+W+ M P++ PIV++V+IA+ GH LMRSS GVR+RGAGGNP+ Sbjct: 133 VLLPSPGGTSPEWLGTAMGYQTPLIAAPIVWSVLIAIVGHLLLMRSSAGVRVRGAGGNPR 192 Query: 205 AIVRSGGSVVRAKALMYGLAGVLGILSALTLVGITTSADANIAQRYTLISIAAVILGGGS 264 A+ R G S+VR+KA +YG+AGV G+LS L+L+G+TTSADAN+A RYTL+SIAAVILGGG Sbjct: 193 AMRRFGWSLVRSKATLYGVAGVFGVLSGLSLLGLTTSADANLALRYTLLSIAAVILGGGE 252 Query: 265 FIGGKVSPIGATLGAITLGIAASFLSFLNIAPKWQIGLQGAILIIVLSMRILLSARGERQ 324 FIGG+VS +GA LGAITL +AASFL+FLNI+ WQ+G+QGAILI+VLS+R+LL RGER+ Sbjct: 253 FIGGRVSVVGAVLGAITLTLAASFLAFLNISADWQVGMQGAILIVVLSLRVLLQ-RGERR 311 >ref|YP_004227087.1| inner-membrane translocator [Burkholderia sp. CCGE1001] gb|ADX54027.1| inner-membrane translocator [Burkholderia sp. CCGE1001] Length = 316 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 196/314 (62%), Positives = 244/314 (77%), Gaps = 1/314 (0%) Query: 11 ARHGLLSRHEIQTLLLPMATLAVVLAPIFWINPNTMSYFGLGLLLNLAVPMILASMAQLC 70 AR + S LLP +L VL PI + P MSYFG LLLNLAVP++LA++AQL Sbjct: 4 ARFSIQSTQGRLRALLPAISLIAVLVPILIMQPAVMSYFGSSLLLNLAVPIVLATLAQLA 63 Query: 71 IIAVNDLDLSIGAFISLVSCIAVTWLPERPLLGVAALIACVLLYAAIGALVELFDLPSIV 130 II VNDLDLSIG+F+SLV+CI T L + P LG ALI CVL YAA+GAL+EL +PSIV Sbjct: 64 IITVNDLDLSIGSFVSLVACIGATLLVKEPWLGALALIGCVLAYAAVGALIELRQIPSIV 123 Query: 131 VTLGLSFVWGGWALILLPMPGGATPQWIQDVMNLAIPVVPTPIVYAVVIALCGHWFLMRS 190 VTLGLSFVW G A++LLP PGG +P W+ MN PV+ PIV++VV+A+ GH LMR+ Sbjct: 124 VTLGLSFVWSGLAIVLLPSPGGTSPGWLGTAMNYQTPVIAAPIVWSVVVAIIGHVLLMRT 183 Query: 191 SLGVRLRGAGGNPKAIVRSGGSVVRAKALMYGLAGVLGILSALTLVGITTSADANIAQRY 250 S GVR+RGAGGNP+A+ R G S+VR+KA +YG+AG+ G+LS L+L+G+TTSADAN+A RY Sbjct: 184 SAGVRIRGAGGNPRAMRRFGWSLVRSKATLYGIAGIFGVLSGLSLLGLTTSADANLALRY 243 Query: 251 TLISIAAVILGGGSFIGGKVSPIGATLGAITLGIAASFLSFLNIAPKWQIGLQGAILIIV 310 TL+SIAAVILGGG FIGG+VS IGA LGAITL +AASFL+FLNI+ WQ+G+QGAIL++V Sbjct: 244 TLLSIAAVILGGGEFIGGRVSVIGAVLGAITLTLAASFLAFLNISADWQVGMQGAILVVV 303 Query: 311 LSMRILLSARGERQ 324 LS+ +L RGERQ Sbjct: 304 LSL-RVLLQRGERQ 316