BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2028.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777403.1| sugar ABC transporter periplasmic protein [H... 610 e-172 ref|YP_004227085.1| simple sugar transport system substrate-bind... 434 e-120 ref|YP_003911133.1| putative simple sugar transport system subst... 434 e-120 ref|YP_001861289.1| putative simple sugar transport system subst... 431 e-119 ref|YP_003609018.1| simple sugar transporter substrate-binding p... 431 e-118 >ref|YP_003777403.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65495.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 369 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 340/355 (95%), Positives = 348/355 (98%) Query: 1 MNALVRRRGVGLHLAAIAATSATLILGAGHANAQVATGDTSQAKIALSNNYAANAWRQSM 60 MNA VRRRGVGL LAAIAA++ L+L AG A+AQVATGDTSQAKIALSNNYAANAWRQSM Sbjct: 15 MNAFVRRRGVGLQLAAIAASTIPLMLAAGSASAQVATGDTSQAKIALSNNYAANAWRQSM 74 Query: 61 LKTWAATADDAVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNG 120 LKTWAATADDAVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNG Sbjct: 75 LKTWAATADDAVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNG 134 Query: 121 TIKKACAAGVVVVSYDGVVTEPCAYRVTFDFRKMGERQVDYLAERLNGKGNILEIRGLAG 180 TIKKACAAGVVVVSYDGVVTEPCAYRVTFDFRKMGERQ+DYLAERLNGKGNILEIRGLAG Sbjct: 135 TIKKACAAGVVVVSYDGVVTEPCAYRVTFDFRKMGERQIDYLAERLNGKGNILEIRGLAG 194 Query: 181 VSVDGEIHAGIMDGLKKHPGLKIVGSVNGDWAQTVAQKAVAGILPTLPKVDGVVTQGGDG 240 VSVDGEIHAGIMDGLKKHPGLK+VGSVNGDWAQTVAQKAVAGILPTLPK+DGVVTQGGDG Sbjct: 195 VSVDGEIHAGIMDGLKKHPGLKVVGSVNGDWAQTVAQKAVAGILPTLPKIDGVVTQGGDG 254 Query: 241 FGVAQAFKAANRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVL 300 FGVAQAFKAANRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVL Sbjct: 255 FGVAQAFKAANRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVL 314 Query: 301 AGKKIPKDVDIVAPLLYLTAEQLPDALAKTPQGGVADIGFSQADTVKLLDTPKSK 355 AGKKIPKDVDIVAPLLYLTAEQLP+ALAKTPQGGVADIGFSQADTVKLLD PKSK Sbjct: 315 AGKKIPKDVDIVAPLLYLTAEQLPEALAKTPQGGVADIGFSQADTVKLLDAPKSK 369 >ref|YP_004227085.1| simple sugar transport system substrate-binding protein [Burkholderia sp. CCGE1001] gb|ADX54025.1| putative simple sugar transport system substrate-binding protein [Burkholderia sp. CCGE1001] Length = 344 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 231/340 (67%), Positives = 274/340 (80%), Gaps = 2/340 (0%) Query: 11 GLHLAAIAATSATLILGAGHANAQVATGDTSQAKIALSNNYAANAWRQSMLKTWAATADD 70 G+ + A A A ++ A HA QVATGDTSQ KIALSN++A NAWRQSMLK+W A A Sbjct: 5 GMKVRAALALVACMLGSAAHA--QVATGDTSQKKIALSNSFAGNAWRQSMLKSWNAIAQQ 62 Query: 71 AVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNGTIKKACAAGV 130 AV K +AAAPAFTT+ENQ TEQAQQ+QNLILQGY AIV+DA SPTALNGTIKKACAAG+ Sbjct: 63 AVSDKKIAAAPAFTTAENQVTEQAQQVQNLILQGYNAIVIDAVSPTALNGTIKKACAAGI 122 Query: 131 VVVSYDGVVTEPCAYRVTFDFRKMGERQVDYLAERLNGKGNILEIRGLAGVSVDGEIHAG 190 VVVS+DGVV EPCAYRV FDF+ E+ VDYLA RLNGKGNILE+RG+AG+SVD +H G Sbjct: 123 VVVSFDGVVDEPCAYRVNFDFKGWAEQGVDYLAARLNGKGNILEVRGVAGISVDNLMHEG 182 Query: 191 IMDGLKKHPGLKIVGSVNGDWAQTVAQKAVAGILPTLPKVDGVVTQGGDGFGVAQAFKAA 250 ++DGLKKHPGLK+VGSVNGDW Q+VAQKAVAGILPTLP+VDGV T+G FG+AQAFKAA Sbjct: 183 VLDGLKKHPGLKLVGSVNGDWTQSVAQKAVAGILPTLPQVDGVATEGEMSFGIAQAFKAA 242 Query: 251 NRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVLAGKKIPKDVD 310 NR P +I+G+ EL+WW Q +GY++ S SNPPGAV+ AFWVAQQVLAGK IPKDV Sbjct: 243 NRPAPPMIIGSTYPELEWWSEQAKTGYQSRSLSNPPGAVSFAFWVAQQVLAGKPIPKDVT 302 Query: 311 IVAPLLYLTAEQLPDALAKTPQGGVADIGFSQADTVKLLD 350 I PLL ++ ++LP LA TP+GG+AD+ ++ TV LLD Sbjct: 303 INVPLLAISQQELPAKLAATPKGGIADVTYTLPQTVALLD 342 >ref|YP_003911133.1| putative simple sugar transport system substrate-binding protein [Burkholderia sp. CCGE1003] gb|ADN61842.1| putative simple sugar transport system substrate-binding protein [Burkholderia sp. CCGE1003] Length = 344 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 225/325 (69%), Positives = 267/325 (82%) Query: 26 LGAGHANAQVATGDTSQAKIALSNNYAANAWRQSMLKTWAATADDAVKRKLVAAAPAFTT 85 + A+AQVATGDTSQ KIALSN++A NAWRQSMLK+W A A AV K +AAAPAFTT Sbjct: 18 MAGSAAHAQVATGDTSQKKIALSNSFAGNAWRQSMLKSWNAVAQQAVNDKKIAAAPAFTT 77 Query: 86 SENQPTEQAQQIQNLILQGYKAIVVDAASPTALNGTIKKACAAGVVVVSYDGVVTEPCAY 145 +ENQ TEQAQQ+QNLILQGY AIV+DA SPTALNGTIKKACAAG+VVVS+DGVV EPCAY Sbjct: 78 AENQVTEQAQQVQNLILQGYNAIVIDAVSPTALNGTIKKACAAGIVVVSFDGVVDEPCAY 137 Query: 146 RVTFDFRKMGERQVDYLAERLNGKGNILEIRGLAGVSVDGEIHAGIMDGLKKHPGLKIVG 205 RV FDF+ E+ VDYLA RLNGKGNILE+RG+AG+SVD +H G+++GLKKHPGLK+VG Sbjct: 138 RVNFDFKGWAEQGVDYLATRLNGKGNILEVRGVAGISVDNLMHEGVLEGLKKHPGLKLVG 197 Query: 206 SVNGDWAQTVAQKAVAGILPTLPKVDGVVTQGGDGFGVAQAFKAANRELPIIILGNREDE 265 SVNGDW Q+VAQKAVAGILPTLP+VDGV T+G FG+AQAFKAANR P +I+G+ E Sbjct: 198 SVNGDWTQSVAQKAVAGILPTLPQVDGVATEGEMSFGIAQAFKAANRPTPPMIIGSTYPE 257 Query: 266 LQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVLAGKKIPKDVDIVAPLLYLTAEQLPD 325 L+WW Q +GY++ S SNPPGAV+ AFWVAQQVLAGK IPKDV I PLL ++ ++LP Sbjct: 258 LEWWSEQAKTGYQSRSLSNPPGAVSFAFWVAQQVLAGKHIPKDVTINVPLLAISQQELPA 317 Query: 326 ALAKTPQGGVADIGFSQADTVKLLD 350 LA TP+GG+AD+ ++ TV LLD Sbjct: 318 KLAATPKGGLADVTYTLPQTVALLD 342 >ref|YP_001861289.1| putative simple sugar transport system substrate-binding protein [Burkholderia phymatum STM815] gb|ACC74243.1| putative simple sugar transport system substrate-binding protein [Burkholderia phymatum STM815] Length = 344 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 227/340 (66%), Positives = 274/340 (80%), Gaps = 2/340 (0%) Query: 11 GLHLAAIAATSATLILGAGHANAQVATGDTSQAKIALSNNYAANAWRQSMLKTWAATADD 70 G+ + A A +A ++ A HA QV+ GDTSQ KIALSN++A NAWRQSMLK+W A A Sbjct: 5 GMKVRAALALAACMVGSAAHA--QVSNGDTSQKKIALSNSFAGNAWRQSMLKSWNAIAQQ 62 Query: 71 AVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNGTIKKACAAGV 130 AV K +AAAPAFTT+ENQ TEQAQQ+QNLILQGY AIV+DA SPTALNGTIKKACAAG+ Sbjct: 63 AVSDKKIAAAPAFTTAENQVTEQAQQVQNLILQGYNAIVIDAVSPTALNGTIKKACAAGI 122 Query: 131 VVVSYDGVVTEPCAYRVTFDFRKMGERQVDYLAERLNGKGNILEIRGLAGVSVDGEIHAG 190 VVVS+DGVV EPCAYRV FDF+ E+ VDYLA RLNGKGNILE+RG+AG+SVD +H G Sbjct: 123 VVVSFDGVVDEPCAYRVNFDFKGWAEQGVDYLATRLNGKGNILEVRGVAGISVDNLMHEG 182 Query: 191 IMDGLKKHPGLKIVGSVNGDWAQTVAQKAVAGILPTLPKVDGVVTQGGDGFGVAQAFKAA 250 ++DGLKKHPGLK+VGSVNGDW Q+VAQKAVAG+LPTLP+VDGV T+G FG+AQAFKAA Sbjct: 183 VLDGLKKHPGLKLVGSVNGDWTQSVAQKAVAGVLPTLPQVDGVATEGEMSFGIAQAFKAA 242 Query: 251 NRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVLAGKKIPKDVD 310 +R P +I+G+ EL WW Q +GY++ S SNPPGAV+ AFWVAQQVLAGK+IPKDV Sbjct: 243 DRPTPPMIIGSTYPELAWWSEQTKTGYQSRSLSNPPGAVSFAFWVAQQVLAGKQIPKDVT 302 Query: 311 IVAPLLYLTAEQLPDALAKTPQGGVADIGFSQADTVKLLD 350 I PLL ++ ++LP LA TP+GG+AD+ ++ TV LLD Sbjct: 303 INVPLLAISQQELPAKLAATPKGGIADVTYTLPQTVALLD 342 >ref|YP_003609018.1| simple sugar transporter substrate-binding protein [Burkholderia sp. CCGE1002] gb|ADG19507.1| putative simple sugar transport system substrate-binding protein [Burkholderia sp. CCGE1002] Length = 344 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 228/344 (66%), Positives = 273/344 (79%), Gaps = 4/344 (1%) Query: 7 RRGVGLHLAAIAATSATLILGAGHANAQVATGDTSQAKIALSNNYAANAWRQSMLKTWAA 66 RRG+ + A + A A + A HA QVA GDTSQ KIALSN++A NAWRQSMLK+W Sbjct: 3 RRGIDVRAALVLA--ACMFGSAAHA--QVAAGDTSQKKIALSNSFAGNAWRQSMLKSWNT 58 Query: 67 TADDAVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNGTIKKAC 126 A AV K +AAAPAFTT+ENQ TEQAQQ+QNL+LQGY AIV+DA SPTALNGTIKKAC Sbjct: 59 VAQQAVSDKKIAAAPAFTTAENQVTEQAQQVQNLVLQGYNAIVIDAVSPTALNGTIKKAC 118 Query: 127 AAGVVVVSYDGVVTEPCAYRVTFDFRKMGERQVDYLAERLNGKGNILEIRGLAGVSVDGE 186 AAG+VVVS+DGVV EPCAYRV FDF+ E+ VDYLA RLNGKGN+LE+RG+AG+SVD Sbjct: 119 AAGIVVVSFDGVVDEPCAYRVNFDFKGWAEQGVDYLATRLNGKGNVLEVRGVAGISVDNL 178 Query: 187 IHAGIMDGLKKHPGLKIVGSVNGDWAQTVAQKAVAGILPTLPKVDGVVTQGGDGFGVAQA 246 +H G+++GLKKHPGLK+VGSV+GDW Q+VAQKAVAGILPTLP+VDGV T+G FG+AQA Sbjct: 179 MHEGVLEGLKKHPGLKLVGSVHGDWTQSVAQKAVAGILPTLPEVDGVATEGEMSFGIAQA 238 Query: 247 FKAANRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVLAGKKIP 306 FKAANR P +I+G+ ELQWW Q +GY++ S SNPPGAV+ AFWVAQQVLAGK IP Sbjct: 239 FKAANRPTPPMIIGSTYPELQWWNEQAKTGYQSRSLSNPPGAVSFAFWVAQQVLAGKHIP 298 Query: 307 KDVDIVAPLLYLTAEQLPDALAKTPQGGVADIGFSQADTVKLLD 350 KDV I PLL ++ ++LP LA TP GG+AD+ ++ TV LLD Sbjct: 299 KDVTINVPLLAISEQELPAKLAATPPGGLADVTYTLPQTVALLD 342