BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2026.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02381110.1| transcriptional regulator, GntR family protei... 172 3e-41 ref|YP_366555.1| GntR family transcriptional regulator [Burkhold... 172 4e-41 ref|YP_004869069.1| GntR family transcriptional regulator [Gluco... 166 3e-39 ref|YP_002440230.1| transcriptional regulator, GntR family [Pseu... 161 7e-38 ref|YP_001172568.1| transcriptional regulator [Pseudomonas stutz... 154 7e-36 >ref|ZP_02381110.1| transcriptional regulator, GntR family protein [Burkholderia ubonensis Bu] Length = 235 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 101/221 (45%), Positives = 134/221 (60%), Gaps = 3/221 (1%) Query: 3 SVLRPIARKSLVSETIETLRRQIADGTWKVGELIPAEAVLVAQLGVGRNTVREAVRVLSR 62 S L P R SLV I L+ I G W+VG+ IP E L QL VGRNTVREAVR L+ Sbjct: 2 SSLPPATRHSLVDSAIAILKSNITSGIWRVGQRIPTELDLAKQLAVGRNTVREAVRTLAY 61 Query: 63 SQVLEVRQGDGTYVRKMIDPAETMERINAASFVDHLELHRSLDLEVVRLATQRRTEKDIK 122 S VLEVRQGDGTYVR+ DPAETM ++ A+ DHLEL L+ E R A +RRT++D+ Sbjct: 62 SGVLEVRQGDGTYVRRDFDPAETMRDVDRAARGDHLELQCMLETECARYAARRRTDEDLV 121 Query: 123 EIKACLKRRGERSQHPEFETFVASDRALHMRIALATQNEALFELYRYF---VISTEDRIK 179 ++ LK RGER + + FV DRA H+ +A A+ N AL LYRYF +++ + I Sbjct: 122 ILRQLLKARGEREAWRDVKKFVERDRAFHIAVATASHNHALEALYRYFSGSILANVENIL 181 Query: 180 ENIGLDNYPFTTFQAHVQMVQAIEEQDVKKATSSVMVIFKP 220 + + P +AH ++ AIE++D KA + + I KP Sbjct: 182 VELDEADIPEPDMEAHQAVLDAIEQRDENKAVRATLAILKP 222 >ref|YP_366555.1| GntR family transcriptional regulator [Burkholderia sp. 383] gb|ABB05911.1| transcriptional regulator, GntR family [Burkholderia sp. 383] Length = 235 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 101/221 (45%), Positives = 135/221 (61%), Gaps = 3/221 (1%) Query: 3 SVLRPIARKSLVSETIETLRRQIADGTWKVGELIPAEAVLVAQLGVGRNTVREAVRVLSR 62 S L P R SLV IE L+ I G W+VG+ IP E L QL VGRNTVREAVR L+ Sbjct: 2 SSLPPATRHSLVDSAIEILKSNITSGIWRVGQRIPTELDLAKQLEVGRNTVREAVRTLAY 61 Query: 63 SQVLEVRQGDGTYVRKMIDPAETMERINAASFVDHLELHRSLDLEVVRLATQRRTEKDIK 122 S VLEVRQGDGTYVR+ +DPAETM ++ A+ DHLEL L+ E R A +RRT++D+ Sbjct: 62 SGVLEVRQGDGTYVRRNVDPAETMRDVDRAARSDHLELQCMLETECARYAARRRTDEDLA 121 Query: 123 EIKACLKRRGERSQHPEFETFVASDRALHMRIALATQNEALFELYRYF---VISTEDRIK 179 ++ LK RGER + + FV DRA H+ +A A+ N AL LYRYF +++ + I Sbjct: 122 TLRKLLKARGEREASRDVKKFVERDRAFHIAVAAASHNHALEALYRYFSGSILANVEDIL 181 Query: 180 ENIGLDNYPFTTFQAHVQMVQAIEEQDVKKATSSVMVIFKP 220 + P ++H ++ AIE++D KA + + I KP Sbjct: 182 VELDEAEIPEPDMRSHQDVLDAIEQRDENKAVRATLAILKP 222 >ref|YP_004869069.1| GntR family transcriptional regulator [Gluconacetobacter xylinus NBRC 3288] dbj|BAK84699.1| transcriptional regulator GntR family [Gluconacetobacter xylinus NBRC 3288] Length = 235 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 92/204 (45%), Positives = 127/204 (62%) Query: 3 SVLRPIARKSLVSETIETLRRQIADGTWKVGELIPAEAVLVAQLGVGRNTVREAVRVLSR 62 ++L + R+SLV I+ +R +I G W VGE IP E L L VGRNTVREA+RVLS Sbjct: 5 TLLSQLPRRSLVDCAIDAMREKIESGAWPVGERIPKETELAEMLQVGRNTVREAIRVLSH 64 Query: 63 SQVLEVRQGDGTYVRKMIDPAETMERINAASFVDHLELHRSLDLEVVRLATQRRTEKDIK 122 + VLEVRQGDGTYVR +DPA M R+ +S DH EL L+ E RLA RT +DI+ Sbjct: 65 ADVLEVRQGDGTYVRFELDPAAVMRRVTRSSLRDHFELRVILETEAARLAAGHRTARDIR 124 Query: 123 EIKACLKRRGERSQHPEFETFVASDRALHMRIALATQNEALFELYRYFVISTEDRIKENI 182 +++ LK RGE + + + F+ +D A H+ +A AT NEAL ELYRYF+++ + + Sbjct: 125 KLEKTLKVRGEWAAGGDLDRFLKADTAFHLAVAEATHNEALVELYRYFLVAARQAGRAVM 184 Query: 183 GLDNYPFTTFQAHVQMVQAIEEQD 206 P + AH ++ +AIE+ D Sbjct: 185 EEHGLPEPGYAAHERIFRAIEQGD 208 >ref|YP_002440230.1| transcriptional regulator, GntR family [Pseudomonas aeruginosa LESB58] ref|YP_002552634.1| GntR family transcriptional regulator [Acidovorax ebreus TPSY] emb|CAW27362.1| transcriptional regulator, GntR family [Pseudomonas aeruginosa LESB58] gb|ACM32634.1| GntR domain protein [Acidovorax ebreus TPSY] Length = 231 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 99/212 (46%), Positives = 119/212 (56%) Query: 10 RKSLVSETIETLRRQIADGTWKVGELIPAEAVLVAQLGVGRNTVREAVRVLSRSQVLEVR 69 R+SLV TIE +R QI G WKVGE IP E L L VGRNTVREA+RVLS QVLEVR Sbjct: 12 RRSLVDSTIELIRGQIEGGAWKVGERIPREQELAEMLEVGRNTVREAIRVLSHGQVLEVR 71 Query: 70 QGDGTYVRKMIDPAETMERINAASFVDHLELHRSLDLEVVRLATQRRTEKDIKEIKACLK 129 QGDGTYVR IDPAE M R+ + +H L L+ E RLA R++ D+ ++ LK Sbjct: 72 QGDGTYVRTNIDPAEVMRRVGRSGLREHFALRCMLETEAARLAAVHRSKADVGLLRRLLK 131 Query: 130 RRGERSQHPEFETFVASDRALHMRIALATQNEALFELYRYFVISTEDRIKENIGLDNYPF 189 RGE+ QH F +D A H IA N AL ELYRYF S + P Sbjct: 132 ARGEQEQHASSAAFAEADTAFHCAIAGMCGNGALAELYRYFANSVRMNTLTALKDKELPE 191 Query: 190 TTFQAHVQMVQAIEEQDVKKATSSVMVIFKPL 221 H +V AIE QD + A ++V + PL Sbjct: 192 PGLATHEAIVDAIERQDGEAAAAAVRNVVAPL 223 >ref|YP_001172568.1| transcriptional regulator [Pseudomonas stutzeri A1501] gb|ABP79726.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] Length = 235 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 116/199 (58%) Query: 4 VLRPIARKSLVSETIETLRRQIADGTWKVGELIPAEAVLVAQLGVGRNTVREAVRVLSRS 63 +L+ R SLV I+ LR QI G+WK GE IP E L LGVGRNTVREAVR L + Sbjct: 2 MLQHAERLSLVERVIDQLRTQITAGSWKCGERIPTEPQLSDMLGVGRNTVREAVRALVHT 61 Query: 64 QVLEVRQGDGTYVRKMIDPAETMERINAASFVDHLELHRSLDLEVVRLATQRRTEKDIKE 123 +LEVRQG GT+VR DP+E +E ++ A+ D LE+ R+L++E RLA RRT+ D+K Sbjct: 62 GLLEVRQGAGTFVRSNRDPSELLESLDHAALHDQLEVRRALEVEAARLAASRRTDDDLKA 121 Query: 124 IKACLKRRGERSQHPEFETFVASDRALHMRIALATQNEALFELYRYFVISTEDRIKENIG 183 I L RG + E FV D H+ I A N AL E+YR+F ++ I Sbjct: 122 ISDALGARGSWTDAASLEAFVHRDAQFHLSIVRAGHNAALVEMYRFFWAGLQNTIARTEA 181 Query: 184 LDNYPFTTFQAHVQMVQAI 202 + P T+QAH + +AI Sbjct: 182 EKHLPEPTYQAHAAVYEAI 200