BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2022.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02381110.1| transcriptional regulator, GntR family protei...    77   6e-13
ref|YP_366555.1| GntR family transcriptional regulator [Burkhold...    75   3e-12
ref|YP_004869069.1| GntR family transcriptional regulator [Gluco...    72   3e-11
gb|AEA83980.1| transcriptional regulator [Pseudomonas stutzeri D...    65   3e-09
ref|YP_004714326.1| transcriptional regulator [Pseudomonas stutz...    64   6e-09

>ref|ZP_02381110.1| transcriptional regulator, GntR family protein [Burkholderia
           ubonensis Bu]
          Length = 235

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 11  DYLQAQILLESTIASFAARRRTDGDLRLIKDRLVLRGEWKLGRQRSEFFERDRLFHESIS 70
           D+L+ Q +LE+  A +AARRRTD DL +++  L  RGE +  R   +F ERDR FH +++
Sbjct: 95  DHLELQCMLETECARYAARRRTDEDLVILRQLLKARGEREAWRDVKKFVERDRAFHIAVA 154

Query: 71  VASHNPPLSQIHRTF---VTAERQRIRLLVDVGISPGMDFMAHNRIYSAIADQDSVEAEN 127
            ASHN  L  ++R F   + A  + I + +D    P  D  AH  +  AI  +D  +A  
Sbjct: 155 TASHNHALEALYRYFSGSILANVENILVELDEADIPEPDMEAHQAVLDAIEQRDENKAVR 214

Query: 128 AVRNMFAPLLEFVAT 142
           A   +  P + ++ T
Sbjct: 215 ATLAILKPQMTWLET 229


>ref|YP_366555.1| GntR family transcriptional regulator [Burkholderia sp. 383]
 gb|ABB05911.1| transcriptional regulator, GntR family [Burkholderia sp. 383]
          Length = 235

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 11  DYLQAQILLESTIASFAARRRTDGDLRLIKDRLVLRGEWKLGRQRSEFFERDRLFHESIS 70
           D+L+ Q +LE+  A +AARRRTD DL  ++  L  RGE +  R   +F ERDR FH +++
Sbjct: 95  DHLELQCMLETECARYAARRRTDEDLATLRKLLKARGEREASRDVKKFVERDRAFHIAVA 154

Query: 71  VASHNPPLSQIHRTF---VTAERQRIRLLVDVGISPGMDFMAHNRIYSAIADQDSVEAEN 127
            ASHN  L  ++R F   + A  + I + +D    P  D  +H  +  AI  +D  +A  
Sbjct: 155 AASHNHALEALYRYFSGSILANVEDILVELDEAEIPEPDMRSHQDVLDAIEQRDENKAVR 214

Query: 128 AVRNMFAPLLEFVAT 142
           A   +  P + ++ T
Sbjct: 215 ATLAILKPQMTWLET 229


>ref|YP_004869069.1| GntR family transcriptional regulator [Gluconacetobacter xylinus
           NBRC 3288]
 dbj|BAK84699.1| transcriptional regulator GntR family [Gluconacetobacter xylinus
           NBRC 3288]
          Length = 235

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 73/138 (52%)

Query: 1   MSSGSDAPILDYLQAQILLESTIASFAARRRTDGDLRLIKDRLVLRGEWKLGRQRSEFFE 60
           M   + + + D+ + +++LE+  A  AA  RT  D+R ++  L +RGEW  G     F +
Sbjct: 88  MRRVTRSSLRDHFELRVILETEAARLAAGHRTARDIRKLEKTLKVRGEWAAGGDLDRFLK 147

Query: 61  RDRLFHESISVASHNPPLSQIHRTFVTAERQRIRLLVDVGISPGMDFMAHNRIYSAIADQ 120
            D  FH +++ A+HN  L +++R F+ A RQ  R +++    P   + AH RI+ AI   
Sbjct: 148 ADTAFHLAVAEATHNEALVELYRYFLVAARQAGRAVMEEHGLPEPGYAAHERIFRAIEQG 207

Query: 121 DSVEAENAVRNMFAPLLE 138
           D   A  A   +  PL++
Sbjct: 208 DGTRAARAASAVVRPLVQ 225


>gb|AEA83980.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 235

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 64/145 (44%)

Query: 1   MSSGSDAPILDYLQAQILLESTIASFAARRRTDGDLRLIKDRLVLRGEWKLGRQRSEFFE 60
           + S   A + D L+ +  LE   A  AA RRTD DL+ I D L  RG W        F  
Sbjct: 84  LESLDHAALHDQLEVRRALEVEAARLAASRRTDDDLKAISDALGARGSWTGAASLEAFVH 143

Query: 61  RDRLFHESISVASHNPPLSQIHRTFVTAERQRIRLLVDVGISPGMDFMAHNRIYSAIADQ 120
           RD  FH SI  ASHN  L +++R F    +  I         P   + AH  +Y AI   
Sbjct: 144 RDAQFHLSIVRASHNAALVEMYRFFWAGLQNTIARTEAEKHLPEPTYQAHAAVYEAIVRG 203

Query: 121 DSVEAENAVRNMFAPLLEFVATDLK 145
              +A  A   +  P L+ +++  K
Sbjct: 204 CPEQAAIAASELLTPALQALSSTTK 228


>ref|YP_004714326.1| transcriptional regulator [Pseudomonas stutzeri ATCC 17588 = LMG
           11199]
 gb|AEJ05237.1| transcriptional regulator [Pseudomonas stutzeri ATCC 17588 = LMG
           11199]
          Length = 235

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 63/145 (43%)

Query: 1   MSSGSDAPILDYLQAQILLESTIASFAARRRTDGDLRLIKDRLVLRGEWKLGRQRSEFFE 60
           + S   A + D L+ +  LE   A  AA RRTD DL+ I D L  RG W        F  
Sbjct: 84  LESLDHAALHDQLEVRRALEVEAARLAASRRTDDDLKAISDALGARGSWTDAASLEAFVH 143

Query: 61  RDRLFHESISVASHNPPLSQIHRTFVTAERQRIRLLVDVGISPGMDFMAHNRIYSAIADQ 120
           RD  FH SI  ASHN  L +++R F    +  I         P   + AH  +Y AI   
Sbjct: 144 RDAQFHLSIVRASHNAALVEMYRFFWAGLQNTIARTEAEKHLPEPTYQAHAAVYEAIVRG 203

Query: 121 DSVEAENAVRNMFAPLLEFVATDLK 145
              +A  A   +  P L+ ++   K
Sbjct: 204 CPEQAAIAASELLTPALQALSLTTK 228