BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2015.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_145580.1| transcriptional regulator [Ralstonia metallidur... 261 6e-68 ref|YP_001630855.1| GntR family transcriptional regulator [Borde... 253 1e-65 ref|ZP_02885010.1| regulatory protein GntR HTH [Burkholderia gra... 243 1e-62 ref|YP_004417446.1| GntR family transcriptional regulator [Pusil... 234 5e-60 ref|YP_621112.1| GntR-like [Burkholderia cenocepacia AU 1054] >g... 228 8e-58 >ref|YP_145580.1| transcriptional regulator [Ralstonia metallidurans CH34] ref|YP_581803.1| GntR-like protein [Cupriavidus metallidurans CH34] emb|CAI11232.1| transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF12853.1| GntR-like protein [Cupriavidus metallidurans CH34] Length = 231 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 139/222 (62%), Positives = 174/222 (78%), Gaps = 1/222 (0%) Query: 10 LRASGAKALAKYLIEAISSGEMRPGYKLPAERALSQQFQASRGTVRRVLSDLKEQGFITQ 69 +R +GAK LA+YL+E IS+G + G KLPAER LS++F ASRG VRRVL +LK +G ITQ Sbjct: 10 VRTNGAKELARYLVEEISNGTLAVGIKLPAERELSERFNASRGAVRRVLGELKSRGLITQ 69 Query: 70 TVGSGTFVADKVSAEPALEEAL-HVSPAELMEGRLLIEPLLPKLIVQHATRADFLKMREC 128 VGSGTFVA PA + + +SPAELM+ RLLIEP+LP LIVQ+ T DF +M EC Sbjct: 70 VVGSGTFVAAVPETTPAAGKGIGAISPAELMQARLLIEPMLPSLIVQYGTPQDFARMDEC 129 Query: 129 IDKSEAAKTIEEFEYWDGALHQVFAEATHNNFILQLLALVTKVREQGEWGRLKHDSMTPQ 188 I++SEAAKT+EEFE+WDGALH+ A ATHNNFI Q+L L T+VREQGEWGRLK S+TP+ Sbjct: 130 IERSEAAKTVEEFEHWDGALHEALAVATHNNFIRQILELATQVREQGEWGRLKQRSLTPE 189 Query: 189 RRQVYQEQHRDIVTALQNRDEAQARRLIEGHLVQIRENLFSR 230 RR Y++QHR +V AL++RDEA AR++IE HL+QI+ NLF R Sbjct: 190 RRTTYEDQHRALVNALKDRDEATARQVIEQHLLQIQRNLFGR 231 >ref|YP_001630855.1| GntR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP42587.1| transcriptional regulator, GntR-family [Bordetella petrii] Length = 232 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 136/222 (61%), Positives = 176/222 (79%), Gaps = 3/222 (1%) Query: 10 LRASGAKALAKYLIEAISSGEMRPGYKLPAERALSQQFQASRGTVRRVLSDLKEQGFITQ 69 LRA GAKALA +L+E+++SG +R G +LP ERALS++F ASRG+VRRVL++L+E+G I Q Sbjct: 10 LRAEGAKALAHFLMESMASGRLREGMRLPPERALSERFGASRGSVRRVLAELRERGLIVQ 69 Query: 70 TVGSGTFVADKVSA-EPAL--EEALHVSPAELMEGRLLIEPLLPKLIVQHATRADFLKMR 126 VGSGTFVA V A PA + L+ SPAELM+ RLLIEPL+P LI ++AT ADF +M Sbjct: 70 AVGSGTFVAPGVHAVAPAAPGQAGLNTSPAELMQARLLIEPLMPMLIARNATGADFARMG 129 Query: 127 ECIDKSEAAKTIEEFEYWDGALHQVFAEATHNNFILQLLALVTKVREQGEWGRLKHDSMT 186 EC+++SEAA +IE+FE+WDG LH+ FA ATHN F LQ+L L +VREQGEWGRLK +S+T Sbjct: 130 ECLERSEAAASIEDFEHWDGELHKAFAAATHNTFFLQILELANRVREQGEWGRLKSNSLT 189 Query: 187 PQRRQVYQEQHRDIVTALQNRDEAQARRLIEGHLVQIRENLF 228 P+RR+ YQ+QHR IV AL++RD QAR L+ HL QI++NLF Sbjct: 190 PERREQYQQQHRAIVAALKDRDAGQARVLLLAHLEQIQQNLF 231 >ref|ZP_02885010.1| regulatory protein GntR HTH [Burkholderia graminis C4D1M] gb|EDT09442.1| regulatory protein GntR HTH [Burkholderia graminis C4D1M] Length = 245 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 138/234 (58%), Positives = 168/234 (71%), Gaps = 14/234 (5%) Query: 9 SLRASGAKALAKYLIEAISSGEMRPGYKLPAERALSQQFQASRGTVRRVLSDLKEQGFIT 68 S+RA GA+ALA YL EAI +G +R G KLPAER LS++F ASRG VRRVL+DLK +GFIT Sbjct: 10 SVRAEGARALASYLEEAIRTGRLREGVKLPAERELSEEFGASRGAVRRVLADLKGRGFIT 69 Query: 69 QTVGSGTFV--------------ADKVSAEPALEEALHVSPAELMEGRLLIEPLLPKLIV 114 Q VGSGTFV A + +E + SPAELME RLLIEPL+P LIV Sbjct: 70 QVVGSGTFVLPQKDVAAAAVRVEAQNAQVMHSSQEVVQTSPAELMEARLLIEPLMPGLIV 129 Query: 115 QHATRADFLKMRECIDKSEAAKTIEEFEYWDGALHQVFAEATHNNFILQLLALVTKVREQ 174 ++AT ADF +M ECI++SEAA++IEEFE WDG LH+ FA ATHN+F L++L L +VREQ Sbjct: 130 RYATAADFARMVECIERSEAAQSIEEFEKWDGELHKTFALATHNSFFLRVLELTNEVREQ 189 Query: 175 GEWGRLKHDSMTPQRRQVYQEQHRDIVTALQNRDEAQARRLIEGHLVQIRENLF 228 GEWGRLK S+T +RR Y+ QHR IV AL++RD A L+ GHL QIR NLF Sbjct: 190 GEWGRLKRKSLTAERRAEYEAQHRAIVDALRDRDADLACELLTGHLKQIRHNLF 243 >ref|YP_004417446.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC20822.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 238 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 129/229 (56%), Positives = 164/229 (71%), Gaps = 15/229 (6%) Query: 10 LRASGAKALAKYLIEAISSGEMRPGYKLPAERALSQQFQASRGTVRRVLSDLKEQGFITQ 69 LR++GA+ LA L+ I SG + G KLP+ER LS++F SRG+VRRVL+ L++ G+ITQ Sbjct: 10 LRSAGAQTLATCLLTEIRSGRIPVGAKLPSERDLSERFNTSRGSVRRVLAALRDSGWITQ 69 Query: 70 TVGSGTFVADKVSAEPALEEAL----------HVSPAELMEGRLLIEPLLPKLIVQHATR 119 VGSGTF +A PA E + SPAELME RLLIEPL+P LIV+HATR Sbjct: 70 AVGSGTF-----AARPAHEISTDWDDAGLFSDQTSPAELMEARLLIEPLMPALIVRHATR 124 Query: 120 ADFLKMRECIDKSEAAKTIEEFEYWDGALHQVFAEATHNNFILQLLALVTKVREQGEWGR 179 ADF +M EC+ + E A+TIE+FE WDG LHQ A+ATHN+F LQ+LAL +VR+QG+WGR Sbjct: 125 ADFARMHECLVQGEQAQTIEDFELWDGELHQALAQATHNHFFLQVLALTNRVRQQGDWGR 184 Query: 180 LKHDSMTPQRRQVYQEQHRDIVTALQNRDEAQARRLIEGHLVQIRENLF 228 LK +S+TPQRR Y+ QHR IV AL++RD QAR + HL QI+ NLF Sbjct: 185 LKRNSLTPQRRTEYERQHRAIVAALEDRDAEQARNALTVHLTQIQRNLF 233 >ref|YP_621112.1| GntR-like [Burkholderia cenocepacia AU 1054] ref|YP_840223.1| GntR domain-containing protein [Burkholderia cenocepacia HI2424] gb|ABF76139.1| transcriptional regulator, GntR family [Burkholderia cenocepacia AU 1054] gb|ABK13330.1| transcriptional regulator, GntR family [Burkholderia cenocepacia HI2424] Length = 252 Score = 228 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 138/242 (57%), Positives = 176/242 (72%), Gaps = 16/242 (6%) Query: 1 METPHTPNSLRASGAKALAKYLIEAISSGEMRPGYKLPAERALSQQFQASRGTVRRVLSD 60 M +S+RA+GA+ALA YL+E I++G M G KLPAER LS+QF ASRG VRRVL D Sbjct: 11 MSEVEATSSVRAAGARALAAYLVEEIATGRMGDGMKLPAERHLSEQFGASRGAVRRVLQD 70 Query: 61 LKEQGFITQTVGSGTFVADKVSAEPALEEAL--------------HVSPAELMEGRLLIE 106 LK++G ITQ+VGSGT+V K A AL +++ SPAELME RLLIE Sbjct: 71 LKDRGLITQSVGSGTYV--KAGAALALPKSVRTQAQADEQGVSVHQTSPAELMEARLLIE 128 Query: 107 PLLPKLIVQHATRADFLKMRECIDKSEAAKTIEEFEYWDGALHQVFAEATHNNFILQLLA 166 PL+PKLI ++AT ADF KM ECI++SEAA+T+EEFE+WDG LH+ F+ ATHN+F +Q+L Sbjct: 129 PLMPKLIARNATSADFAKMAECIERSEAAETVEEFEHWDGELHRAFSIATHNSFFMQILE 188 Query: 167 LVTKVREQGEWGRLKHDSMTPQRRQVYQEQHRDIVTALQNRDEAQARRLIEGHLVQIREN 226 L+ +VREQGEWGRLK S+TP RR+ YQ QHR IV AL++RD A +++ HL QI+ N Sbjct: 189 LMNRVREQGEWGRLKRLSLTPGRREEYQAQHRAIVEALRDRDAEAAAKVLTEHLGQIQHN 248 Query: 227 LF 228 LF Sbjct: 249 LF 250