BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2013.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004215992.1| carboxymuconolactone decarboxylase [Acidobac...   127   6e-28
ref|YP_002384863.1| decarboxylase [Escherichia fergusonii ATCC 3...   108   3e-22
ref|YP_003943847.1| Carboxymuconolactone decarboxylase [Enteroba...   105   2e-21
ref|YP_001454580.1| hypothetical protein CKO_03053 [Citrobacter ...   105   3e-21
ref|YP_002275351.1| carboxymuconolactone decarboxylase [Gluconac...   102   2e-20

>ref|YP_004215992.1| carboxymuconolactone decarboxylase [Acidobacterium sp. MP5ACTX9]
 gb|ADW67212.1| Carboxymuconolactone decarboxylase [Acidobacterium sp. MP5ACTX9]
          Length = 137

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/130 (56%), Positives = 90/130 (69%), Gaps = 1/130 (0%)

Query: 1   MSTSPTPYA-DEKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPG 59
           M+   TP A D  +K GS  F    G SA  F   F+D+APGFGR I+E EFG  Y RPG
Sbjct: 1   MANELTPSATDTLYKLGSETFTSSLGTSAAEFEKGFEDIAPGFGRLILEAEFGTAYHRPG 60

Query: 60  LDLRYREVAIIASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIG 119
           LDL+ RE+ I+A+CATLG  G+ A KMHI  ALRAG T+ EI E L+Q+ FAAGLPT+IG
Sbjct: 61  LDLKTRELIIVATCATLGATGYGAAKMHIGAALRAGATRAEIVEALVQITFAAGLPTSIG 120

Query: 120 AIGVAREAFS 129
           A+  AR+AF+
Sbjct: 121 ALEAARDAFA 130


>ref|YP_002384863.1| decarboxylase [Escherichia fergusonii ATCC 35469]
 emb|CAQ91263.1| putative decarboxylase [Escherichia fergusonii ATCC 35469]
          Length = 124

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 1/120 (0%)

Query: 11  EKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVAII 70
           E+F TG  + + V G+   A V +  D+AP F RY+IE+ FGD+YSRPGLDLR RE+A +
Sbjct: 4   ERFITGQEMLQKVDGKGGNAVVESLQDIAPDFARYLIEFPFGDIYSRPGLDLRSREIATV 63

Query: 71  ASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAFSE 130
           A+   LG      LK+HI  A   GLT+ EI E++MQ+A  AG P A+  +  A+E F++
Sbjct: 64  AALTALGN-ASPQLKVHIAAAFHVGLTREEITEVIMQMAVYAGFPAALNGLFAAKEVFAK 122


>ref|YP_003943847.1| Carboxymuconolactone decarboxylase [Enterobacter cloacae SCF1]
 gb|ADO50563.1| Carboxymuconolactone decarboxylase [Enterobacter cloacae SCF1]
          Length = 126

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 80/121 (66%), Gaps = 5/121 (4%)

Query: 11  EKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVAII 70
           E+F TG  + + V GQ     V +  D+AP F RY+IE+ FGD+YSRPG++LR RE+A +
Sbjct: 4   ERFITGQKMLQQVDGQGGDGVVKSLQDIAPDFARYLIEFPFGDIYSRPGMNLRDREIATV 63

Query: 71  ASCATLGVIGHAA--LKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAF 128
           A+   L  +G+AA  LK+H+  AL  GLT+ EI E++MQ+A  AG P A+  +  A+E F
Sbjct: 64  AA---LTALGNAAPQLKVHLAAALNVGLTQEEIVEVIMQMAVYAGFPAALNGLFAAKEVF 120

Query: 129 S 129
           +
Sbjct: 121 A 121


>ref|YP_001454580.1| hypothetical protein CKO_03053 [Citrobacter koseri ATCC BAA-895]
 gb|ABV14144.1| hypothetical protein CKO_03053 [Citrobacter koseri ATCC BAA-895]
          Length = 123

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 1/119 (0%)

Query: 11  EKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVAII 70
           E+F TG  + + V G+   A + +  D+AP F RY+IE+ FGD+YSRPGLDLR RE+A +
Sbjct: 4   ERFITGQKMLQQVDGKGGDAVIESLQDIAPDFARYLIEFPFGDIYSRPGLDLRSREIATV 63

Query: 71  ASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAFS 129
           A+   LG      LK+HI  A   GLT+ EI E++MQ+A  AG P A+  +  A+E F+
Sbjct: 64  AALTALGN-ATPQLKVHIAAARHVGLTQEEIIEVIMQMAVYAGFPAALNGLFAAKEVFA 121


>ref|YP_002275351.1| carboxymuconolactone decarboxylase [Gluconacetobacter
           diazotrophicus PAl 5]
 gb|ACI50736.1| Carboxymuconolactone decarboxylase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 127

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/121 (44%), Positives = 74/121 (61%)

Query: 9   ADEKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVA 68
           ADE+F  G   FE +TG  A AF+ +    AP  GR+++EWEF D+Y +  LD R RE  
Sbjct: 2   ADERFTEGKRAFEEITGVPASAFLDSLATTAPELGRFVMEWEFADVYGQTRLDARLREAV 61

Query: 69  IIASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAF 128
           +IASCA  G      L++ I  ALRAGLT+ EI +I +Q    AG+P A+ A+ +A E F
Sbjct: 62  MIASCAARGATAAGVLRLRIGSALRAGLTRREIADICVQTGIIAGVPAALSALQIAGEVF 121

Query: 129 S 129
           +
Sbjct: 122 A 122