BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2010.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_770944.1| TetR family transcriptional regulatory protein ... 202 3e-50 ref|YP_004215866.1| TetR family transcriptional regulator [Rahne... 201 5e-50 ref|YP_004215991.1| regulatory protein TetR [Acidobacterium sp. ... 184 6e-45 ref|ZP_05640566.1| transcriptional regulatory protein [Pseudomon... 142 2e-32 ref|YP_001417229.1| TetR family transcriptional regulator [Xanth... 118 4e-25 >ref|YP_770944.1| TetR family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] emb|CAK02846.1| putative TetR family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 229 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 102/196 (52%), Positives = 138/196 (70%), Gaps = 1/196 (0%) Query: 15 RRRQILDAARQLFLEHGYGDTSMDRIAEKAEVARRTVYNQF-KSKEALFEAMVQEIWSHF 73 +R IL AA ++FL GY TSMD +A+++ ARRT+YNQF KE LF A+V+ +WS F Sbjct: 30 KRDAILAAATRVFLRQGYEGTSMDLVAQESGAARRTLYNQFPDGKEELFRAVVERVWSAF 89 Query: 74 PVLDITSDEESLADPRAGLLRVGHAVANFWITDESVAFLRMVIAEGGRFPSLLKTFLELG 133 PVLDI ++ E+ ADP GL R+ AVA FW ++AFLRM+IAEG RFP L ++F + G Sbjct: 90 PVLDIVAEAETQADPNVGLRRIAAAVAAFWEPPLAIAFLRMIIAEGTRFPDLTESFFKHG 149 Query: 134 KGPAMAAVTHYLLKLTKKKLLDISDTKLATRQFLGMIDEPLLWVRVVGLNEKYTAKQRSV 193 K PAM AV Y+ ++ LL I D + A RQFLG+IDEPLLW+RV+G +EK++ +R Sbjct: 150 KTPAMGAVRAYIEMQAERGLLTIKDGERAARQFLGLIDEPLLWIRVLGRDEKFSQSERQA 209 Query: 194 IVENAVDMFLGFYRPR 209 +++ AVD+FLG YR R Sbjct: 210 VIDEAVDIFLGHYRTR 225 >ref|YP_004215866.1| TetR family transcriptional regulator [Rahnella sp. Y9602] gb|ADW76739.1| regulatory protein TetR [Rahnella sp. Y9602] Length = 230 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 100/196 (51%), Positives = 140/196 (71%), Gaps = 1/196 (0%) Query: 15 RRRQILDAARQLFLEHGYGDTSMDRIAEKAEVARRTVYNQF-KSKEALFEAMVQEIWSHF 73 +R IL AA ++FL GY TSMD ++++A ARRT+YNQF KEALF A+++ +WS F Sbjct: 30 KRDAILAAATRVFLRQGYESTSMDLVSQEAGAARRTLYNQFPDGKEALFRAVIERVWSAF 89 Query: 74 PVLDITSDEESLADPRAGLLRVGHAVANFWITDESVAFLRMVIAEGGRFPSLLKTFLELG 133 PVLDI ++ E+ ADP GL R+ AVA FW ++ FLRMVIAEG RFP L+++F E G Sbjct: 90 PVLDIVAEAETQADPEVGLRRIAVAVAAFWEPPLAIDFLRMVIAEGARFPDLIESFFEHG 149 Query: 134 KGPAMAAVTHYLLKLTKKKLLDISDTKLATRQFLGMIDEPLLWVRVVGLNEKYTAKQRSV 193 K PAM AV Y+ K + L++++ + A RQFLG+IDEPLLW+RV+G +EK++ +R Sbjct: 150 KTPAMGAVRAYIEKQAEIGALNVTNGERAARQFLGLIDEPLLWIRVLGRDEKFSRTERQA 209 Query: 194 IVENAVDMFLGFYRPR 209 +++ AVD+FLG YR + Sbjct: 210 VIDEAVDIFLGHYRTK 225 >ref|YP_004215991.1| regulatory protein TetR [Acidobacterium sp. MP5ACTX9] gb|ADW67211.1| regulatory protein TetR [Acidobacterium sp. MP5ACTX9] Length = 243 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 90/203 (44%), Positives = 140/203 (68%), Gaps = 1/203 (0%) Query: 5 EKIEASGITERRRQILDAARQLFLEHGYGDTSMDRIAEKAEVARRTVYNQF-KSKEALFE 63 E + + +R IL AA ++F++HGY TSM+ +A+ A ARRT+YNQF + K LF Sbjct: 15 ESLAQLDVLSKRDTILAAASRVFIQHGYEGTSMELVAQTAGSARRTLYNQFPEGKAQLFH 74 Query: 64 AMVQEIWSHFPVLDITSDEESLADPRAGLLRVGHAVANFWITDESVAFLRMVIAEGGRFP 123 A+V+ +W FPV+ I +DE LADP GL +G+A+ FW + +V+FLRM+I E RFP Sbjct: 75 AVVERMWMAFPVMSIDTDEAMLADPAKGLRTIGYAIGEFWRSPLAVSFLRMIIGEASRFP 134 Query: 124 SLLKTFLELGKGPAMAAVTHYLLKLTKKKLLDISDTKLATRQFLGMIDEPLLWVRVVGLN 183 L+++F + GK PA+ A+ +Y+ +L K+ +L ++D +LA++QF+GM+DE LLWVRV+G Sbjct: 135 ELMRSFFDAGKTPAVGAIRNYIAELGKRGVLKLTDAELASQQFIGMVDESLLWVRVMGSE 194 Query: 184 EKYTAKQRSVIVENAVDMFLGFY 206 + ++ + + +VE AV +FLG Y Sbjct: 195 AELSSARITEVVEQAVVIFLGHY 217 >ref|ZP_05640566.1| transcriptional regulatory protein [Pseudomonas syringae pv. tabaci ATCC 11528] gb|EGH90067.1| transcriptional regulatory protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 214 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 124/207 (59%), Gaps = 2/207 (0%) Query: 3 PVEKIEASGITERRR-QILDAARQLFLEHGYGDTSMDRIAEKAEVARRTVYNQF-KSKEA 60 PV+++ G + R +IL AA ++F+EHGY SM+ IA+ A V R+T+YN+F + KE+ Sbjct: 7 PVDELLNPGESASRPVRILAAAGRMFIEHGYEGASMEEIAKAAAVTRQTLYNRFPEGKES 66 Query: 61 LFEAMVQEIWSHFPVLDITSDEESLADPRAGLLRVGHAVANFWITDESVAFLRMVIAEGG 120 LF A+ + +W FP + + +DE +LADPR GL+++ A FW + FLRMV EG Sbjct: 67 LFVAVAERMWKAFPAMHVPTDERALADPRNGLMQIATEFACFWSGPTAADFLRMVFMEGR 126 Query: 121 RFPSLLKTFLELGKGPAMAAVTHYLLKLTKKKLLDISDTKLATRQFLGMIDEPLLWVRVV 180 RFP L F E+ +GPAMAA++ YL +L ++ +L + + R F+ +D +L ++ Sbjct: 127 RFPVLAYRFDEVIQGPAMAAISDYLAELARRGILSVQVPEADARYFMQTLDGGVLLKQIR 186 Query: 181 GLNEKYTAKQRSVIVENAVDMFLGFYR 207 E ++ IVE+ VD FL R Sbjct: 187 ANGEPLARQEIEQIVESTVDAFLRLLR 213 >ref|YP_001417229.1| TetR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS67572.1| transcriptional regulator, TetR family [Xanthobacter autotrophicus Py2] Length = 221 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 95/179 (53%), Gaps = 5/179 (2%) Query: 26 LFLEHGYGDTSMDRIAEKAEVARRTVYNQFKSKEALFEAMVQEIWSHFPVLDITSDEESL 85 LFLE GY TSMD +A A V++RT+Y F K LFEA++ E WSHF + E + Sbjct: 44 LFLEKGYEGTSMDAVAAAAPVSKRTLYQHFPGKAELFEAVIDEAWSHFTRAPLIPTEAT- 102 Query: 86 ADPRAGLLRVGHAVANFWITDESVAFLRMVIAEGGRFPSLLKTFLELGKGPAMAAVTHYL 145 DPR L + W + + LR+VIAE RFP L K + GK PA+ ++ YL Sbjct: 103 GDPRGVLRAYVARLTEHWARPDVIPLLRLVIAEAPRFPELSKAYFAAGKEPAVKGLSAYL 162 Query: 146 LKLTKKKLLDIS-DTKLATRQFLGMIDEPLLWVRVVGLNEKYTAKQRSVIVENAVDMFL 203 L + L D +L QFLG I EPL W RV+G+ + A + VE A+D L Sbjct: 163 ASLAAEGRLPAGRDPQLMAAQFLGAIKEPLFWPRVLGVPVAFDATE---AVERAIDGVL 218